@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3957: (2016-02-22 )
MPRKVFSSQAYRHKVVLVSGGCSGIGRALALRFARAGARLAILDLDQAALDSLVQHLRDHLGGEALGLRCDVADADAVERAVALAVERFGGIDVLVNNAGITHRGTFAETGLGVFRKVMAVNFFGAVHCTRAALPSLLERRGQIVVLGSLTGFAPLLYRSAYNASKHALHGLFDTLRMELEGTGVSVTLACPGFTATDLRKNALVGDGSVTRQPVQVLGSQVASPVEVAEAIFQGAARRRRLLVLSNVNWRARLLARFFPRLFEKLLVPRLSGLKPQP

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_D_11(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_B_7(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_C_9(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]




EMO_A_7(3RI3)
ACT3_STRCO
[Raw transfer]




3HR_A_3(3W8E)
?
[Raw transfer]




MLA_A_3(3W8F)
?
[Raw transfer]




EMO_B_5(3CSD)
ACT3_STRCO
[Raw transfer]




EMO_A_5(2RHR)
ACT3_STRCO
[Raw transfer]




EMO_B_5(3RI3)
ACT3_STRCO
[Raw transfer]




DXX_A_3(3W8D)
?
[Raw transfer]




3HR_C_19(3VDR)
?
[Raw transfer]




3HR_B_15(3VDR)
?
[Raw transfer]




3HR_D_24(3VDR)
?
[Raw transfer]




3HR_A_9(3VDR)
?
[Raw transfer]




62 PsiBlast_CBE 80.2434%-123 - C1 -2JAP - ? -
101 Fugue 80.2228%-110 - C1 -1XSE - DHI1_CAVPO -
65 PsiBlast_CBE 79.7434%-121 - C1 -2JAP - ? -
63 PsiBlast_CBE 79.6434%-122 - C1 -2JAP - ? -
81 HHSearch 79.0534%-112 - C1 -2CFC 9.5 HCDR_XANP2
64 PsiBlast_CBE 78.5934%-123 - C1 -2JAP - ? -
24 PsiBlast_CBE 75.6337%-115 - C1 -2CFC 8.1 HCDR_XANP2
2 PsiBlast_PDB 73.9636%-118 - C1 -3TJR - ? -
29 PsiBlast_CBE 73.9433%-114 - C1 -4FN4 - ? -
3 PsiBlast_PDB 73.8737%-115 - C1 -2CFC 9.3 HCDR_XANP2
4 PsiBlast_PDB 73.6533%-114 - C1 -4FN4 - ? -
25 PsiBlast_CBE 73.3837%-115 - C1 -2CFC 7.5 HCDR_XANP2
26 PsiBlast_CBE 72.8137%-113 - C1 -2CFC 7.2 HCDR_XANP2
27 PsiBlast_CBE 72.4533%-113 - C1 -4FN4 - ? -
28 PsiBlast_CBE 72.3333%-110 - C1 -4FN4 - ? -
89 HHSearch 72.0726%-108 - C1 -3TSC - ? -
90 HHSearch 70.0627%-117 - C1 -2ZAT - DHRS4_PIG -
78 PsiBlast_CBE 69.6233%-123 - C1 -1VL8 - ? -
93 HHSearch 68.8927%-107 - C1 -3AI3 - ? -
17 PsiBlast_PDB 68.5837%-121 - C1 -1W4Z - ACT3_STRCO -
53 PsiBlast_CBE 65.5137%-120 - C1 -3RI3 4.1 ACT3_STRCO
51 PsiBlast_CBE 65.3537%-121 - C1 -2RHR 3.8 ACT3_STRCO
8 PsiBlast_PDB 65.2734%-119 - C1 -3W8D 3.8 ?
52 PsiBlast_CBE 64.9737%-120 - C1 -3RI3 3.6 ACT3_STRCO
9 PsiBlast_PDB 64.7234%-119 - C1 -3W8E 4.1 ?
10 PsiBlast_PDB 64.1734%-118 - C1 -3W8F 3.7 ?
32 PsiBlast_CBE 63.9534%-119 - C1 -3VDR 3.0 ?
6 PsiBlast_PDB 63.5834%-119 - C1 -3VDR 3.8 ?
56 PsiBlast_CBE 63.5737%-119 - C1 -3CSD 3.6 ACT3_STRCO
31 PsiBlast_CBE 62.0934%-119 - C1 -3VDR 3.8 ?
30 PsiBlast_CBE 61.9434%-119 - C1 -3VDR 4.0 ?