@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0731: (2017-12-28 )
MENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKLPVEVVQYGAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLALDVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQISTSKKGK

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5RP_A_5(4M8L)
RPIA_FRATW
[Raw transfer]




5RP_A_5(4M8L)
RPIA_FRATW
[Raw transfer]




DER_B_18(1LK7)
RPIA_PYRHO
[Raw transfer]




DER_C_19(1LK7)
RPIA_PYRHO
[Raw transfer]




DER_A_17(1LK7)
RPIA_PYRHO
[Raw transfer]




CIT_D_4(1M0S)
RPIA_HAEIN
[Raw transfer]




R5P_A_2(3UW1)
?
[Raw transfer]




R5P_A_2(3UW1)
?
[Raw transfer]




5RP_A_2(1UJ5)
RPIA_THET2
[Raw transfer]




5RP_A_2(1UJ5)
RPIA_THET2
[Raw transfer]




DER_B_18(1LK7)
RPIA_PYRHO
[Raw transfer]




5RP_A_3(3HHE)
RPIA_BARHE
[Raw transfer]




5RP_B_22(4M8L)
RPIA_FRATW
[Raw transfer]




5RP_B_4(3ENW)
RPIA_VIBVY
[Raw transfer]




5RP_B_6(3HHE)
RPIA_BARHE
[Raw transfer]




5RP_B_6(3HHE)
RPIA_BARHE
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




A5P_A_4(1UJ6)
RPIA_THET2
[Raw transfer]




DER_D_20(1LK7)
RPIA_PYRHO
[Raw transfer]




CIT_C_3(1M0S)
RPIA_HAEIN
[Raw transfer]




CIT_D_4(1M0S)
RPIA_HAEIN
[Raw transfer]




ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]




5RP_A_3(3ENW)
RPIA_VIBVY
[Raw transfer]




ABF_A_3(1O8B)
RPIA_ECOLI
[Raw transfer]




3GR_D_13(3KWM)
RPIA_FRATT
[Raw transfer]




PGO_D_19(3IXQ)
RPIA_METJA
[Raw transfer]




EDO_A_3(3U7J)
?
[Raw transfer]




EDO_A_7(5UF2)
RPIA_NEIG2
[Raw transfer]




EDO_A_7(5UF2)
RPIA_NEIG2
[Raw transfer]




MLT_A_4(4NML)
?
[Raw transfer]




ABF_A_3(3ENV)
RPIA_VIBVY
[Raw transfer]




PGO_A_8(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_C_15(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_C_15(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_D_18(3IXQ)
RPIA_METJA
[Raw transfer]




PGO_B_12(3IXQ)
RPIA_METJA
[Raw transfer]




ABF_B_4(3ENV)
RPIA_VIBVY
[Raw transfer]




PEG_C_9(3KWM)
RPIA_FRATT
[Raw transfer]




PEG_C_12(3KWM)
RPIA_FRATT
[Raw transfer]




73 HHSearch 88.2054% -67 - C9 -4GMK - ? -
69 HHSearch 87.5675% - - C9 -3L7O - RPIA_STRMU -
1 PsiBlast_PDB 86.0574% - - C9 -3L7O - RPIA_STRMU -
74 HHSearch 85.8854% -60 - C9 -4GMK - ? -
2 PsiBlast_PDB 85.1253% -58 - C9 -4GMK - ? -
5 PsiBlast_PDB 80.2437% -86 - C9 -3HHE 3.3 RPIA_BARHE
28 PsiBlast_CBE 79.1237% -88 - C9 -3HHE 3.7 RPIA_BARHE
75 HHSearch 78.5938% -83 - C9 -3HHE 3.7 RPIA_BARHE
29 PsiBlast_CBE 77.1042% -43 - C9 -3IXQ 3.4 RPIA_METJA
30 PsiBlast_CBE 76.0242% -39 - C9 -3IXQ 2.7 RPIA_METJA
6 PsiBlast_PDB 75.8542% -40 - C9 -3IXQ 2.0 RPIA_METJA
79 HHSearch 75.6837% -96 - C9 -1LKZ - RPIA_ECOLI -
31 PsiBlast_CBE 74.6242% -42 - C9 -3IXQ 3.5 RPIA_METJA
82 HHSearch 74.5942% -36 - C9 -3IXQ 2.7 RPIA_METJA
11 PsiBlast_PDB 74.4137% -91 - C9 -1LKZ - RPIA_ECOLI -
13 PsiBlast_PDB 74.1937% -88 - C9 -1KS2 - RPIA_ECOLI -
85 HHSearch 73.5535% -77 - C9 -4IO1 - RPIA_FRATT -
23 PsiBlast_CBE 71.8941% -11 - C9 -1LK7 4.0 RPIA_PYRHO
84 HHSearch 71.7735% -76 - C9 -4M8L 3.6 RPIA_FRATW
83 HHSearch 71.5338% -59 * C9 *1M0S 3.2 RPIA_HAEIN
81 HHSearch 70.9536% -75 - C9 -5UF2 2.6 RPIA_NEIG2
24 PsiBlast_CBE 70.9241% -12 - C9 -1LK7 4.2 RPIA_PYRHO
22 PsiBlast_CBE 70.3941% -8 - C9 -1LK7 4.2 RPIA_PYRHO
8 PsiBlast_PDB 70.3640% -11 - C9 -1UJ5 3.9 RPIA_THET2
10 PsiBlast_PDB 70.3039% -13 - C9 -1UJ6 4.0 RPIA_THET2
4 PsiBlast_PDB 70.1741% -3 - C9 -1LK7 4.1 RPIA_PYRHO
71 HHSearch 69.8040% -10 - C9 -1UJ5 3.9 RPIA_THET2
72 HHSearch 69.7540% -11 - C9 -1UJ6 4.0 RPIA_THET2
68 HHSearch 69.5340% -13 - C9 -1LK7 4.2 RPIA_PYRHO
46 PsiBlast_CBE 69.5237% -54 - C9 -1M0S 3.2 RPIA_HAEIN
47 PsiBlast_CBE 68.8137% -49 - C9 -1M0S 3.0 RPIA_HAEIN
16 PsiBlast_PDB 65.2837% -3 - C9 -3ENV 2.0 RPIA_VIBVY
70 HHSearch 64.7437% 20 - C9 -3UW1 4.6 ?
17 PsiBlast_PDB 64.5037% -3 - C9 -3ENW 3.4 RPIA_VIBVY
80 HHSearch 64.3537% -83 - C9 -1O8B 4.4 RPIA_ECOLI
33 PsiBlast_CBE 63.5937% -3 - C9 -3ENW 2.9 RPIA_VIBVY
12 PsiBlast_PDB 63.3437% -78 - C9 -1O8B 4.4 RPIA_ECOLI
34 PsiBlast_CBE 62.3337% -5 - C9 -3ENV 2.9 RPIA_VIBVY
14 PsiBlast_PDB 59.8336% -4 - C9 -5UF2 2.6 RPIA_NEIG2
39 PsiBlast_CBE 58.3434% 11 - C9 -3KWM 2.4 RPIA_FRATT
40 PsiBlast_CBE 58.0734% 12 - C9 -3KWM 2.8 RPIA_FRATT
20 PsiBlast_PDB 56.9534% 16 - C9 -4M8L 3.6 RPIA_FRATW
48 PsiBlast_CBE 56.6738% 26 - C9 -3UW1 4.6 ?
37 PsiBlast_CBE 56.3834% 18 - C9 -4M8L 4.0 RPIA_FRATW
49 PsiBlast_CBE 55.3038% 21 - C9 -3U7J 2.7 ?