@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo2635: (2016-04-05 )
MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPINTLIIFGSMLIFDLTTTAINNYMDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFIATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANLLWQGEMVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFNTLYYASFLAVVVSVAINFLHPIMLLSLITIYPVYRNLVKFNKEQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLT
Atome Classification :
(13 SA)
......------..----.10..-......20...------.....30-........40....----------....50........60..--.-----..----...70...---------.....80...--.....----90.......--.100.....--.---.110..--.---------....120.......-.130.......140.-......150.......160.-......--..170..-----.....180........190...--.----...200.......----------------.210......----------..-----------220.....--..230...---....240...------.----...250.......--260.----......270--...-------...------------.---280---..------......290...----------.---...300.......310.......-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MS
I
P
S
F
------
L
K
----
L
V
E
I
Q
-
T
K
I
A
S
V
F
P
F
M
L
------
G
T
L
F
V
V
Y-Q
Y
D
MFKP
I
N
T
L
I
I
F
----------G
S
M
L
I
F
D
L
T
T
T
A
I
N
N
Y
M
D
--Y-----RK----ATDNHDYD---------YR
T
T
SNVIGQ--EQI
P
V
----
R
T
V
I
I
T
I
F
L
--
M
F
F
I
A
TGL
G
--
V
---
W
L
V
F
R
T
--
D
---------
L
L
V
L
L
-
I
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C
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G
I
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L
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T
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G
F
G
I
F
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L
--
A
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A
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L
-----LWQG
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M
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-
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N
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L
P
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F
T
I
A
N
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----------------
L
A
N
-
N
LC
D
L
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----------
E
D
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P
Y
Y
I
G
R
K
M
---
G
V
L
L
F
N
T
L
Y
Y
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A
----
S
F
L
A
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L
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----
M
L
L
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L
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Y
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P
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K
F
----
N
K
------
E
Q
VKSK
T
F
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N
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L
I
N
A
T
L
T
I
L
M
A
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V
V
L
Q
QLT-------------------
18
Fugue
91.51
19%
-160
- C1 -
4R2F
1
?
A:
[38-431]
G
A
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M
PWAT
P
A
----
Y
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-
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G
F
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G
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S
-----
K
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I
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A
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A
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-----
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L
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A
-----
V
P
W
----
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G
--------------------
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N
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--
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M
M
M
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N
--
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G
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T
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DGELD
V
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D
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A
G
P
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G
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---
A
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TNTPS
Q
----
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L
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------
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TFASQGTALS
A
---
N
L
A
A
L
D
G
G
Q
A
L
N
Q
F
T
Q
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K
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D
A
K
S
A
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A
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S
V
LKK
13
Fugue
88.89
16%
-152
* C3 *
2X65
6
?
A:
[1-334]
V
M
K
A
L
I
------
L
A
--------
G
-
G
S
G
E
R
F
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P
L
S
-----------------
T
P
E
T
P
K
Q
F
L
K
L
F
----------
G
N
K
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L
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V
L
E
E
M
D
--
P
-----
K
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V
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Y
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---------
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--
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---
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--
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K
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---
R
F
L
W
N
S
------
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M
--
F
----
L
W
K
A
R
-
E
F
I
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E
V
K
----------------
V
C
E
---
P
S
I
Y
----------
E
N
-----------
L
K
D
V
D
P
R
N
--
F
E
E
L
K
K
A
Y
---
E
K
V
P
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I
S
V
D
Y
------
A
VMEK
S
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K
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W
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L
G
N
W
----
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Y
--
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-------
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D
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------------
V
---
I
L
----
V
D
SDR
V
F
V
K
T
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K
P
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A
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V
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L
----------
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---
D
V
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C
K
E
E
Y
A
Q
K
V
R
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V
V
K
K
L
F
R-----------
12
Fugue
80.95
13%
-145
- C2 -
4OD4
-
?
A:
[22-296]
---------------------
L
V
-
R
I
E
H
T
I
F
S
L
P
F
------
A
Y
V
G
A
L
L
-
S
R
Y
P
F
T
L
A
D
A
I
L
M
A
----------
A
A
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V
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L
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M
A
G
M
A
Y
N
N
I
A
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--
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-----
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----
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R
L
N
P
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---------
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R
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L
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V
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A
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--
L
R
E
A
W
----
A
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A
A
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A
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L
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---
Y
A
L
L
L
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--
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---------
L
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L
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I
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A
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P
H
A
K
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L
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-----------
P
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L
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A
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V
A
A
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--
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A
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S
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-----
V
L
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-----
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P
W
L
Y
V
A
A
V
S
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W
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--
A
----
G
F
D
T
I
-
Y
S
I
M
D
I
D
----------------
F
D
R
-
S
------------------------------
H
G
L
G
S
I
--
P
A
L
L
G
P
K
G
---
A
L
A
A
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L
A
M
H
A
------
A
----
A
V
A
L
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I
A
G
V
E
A
Y
G
--
L
G
A
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----
A
T
V
S
T
A
L
T
A
--
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-------
I
L
V
------------
Q
---
A
M
----
A
W
------
L
G
--------
R
V
----------
K
---
E
S
F
N
L
N
L
A
V
P
I
I
I
G
A
G
I
I
V
D
M
L
--------------------
19
Fugue
80.31
14%
-140
* C2 *
4TQ3
3
?
A:
[15-301]
---
S
K
Y
------
L
R
----
L
L
R
P
V
-
A
W
L
C
F
L
L
P
Y
A
V
------
G
F
G
F
G
I
T
P
N
A
S
L
Q
H
A
V
L
G
L
L
S
F
----------
A
F
W
M
A
F
S
F
T
I
N
A
L
Y
D
------------
R
----
D
V
D
R
L
H
D
G
---------
L
N
L
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M
Q
P
L
V
T
--
G
E
I
S
V
----
R
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A
W
L
--
Y
C
--
I
A
F
L
A
L
S
L
A
--
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---
A
A
A
I
N
E
--
K
---------
F
F
L
A
M
-
L
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A
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--
I
-
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Y
V
Y
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F
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A
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A
L
A
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A
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Y
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--
G
-
L
S
I
G
-------------------
G
A
E
V
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P
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Y
P
A
A
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F
L
A
A
T
--
F
----
Y
I
P
T
A
-
V
S
D
Y
E
F
D
----------------
K
K
A
-
G
L
K
N
T
P
----------
V
F
-----------
F
G
P
E
R
A
L
K
--
S
L
Y
P
L
S
A
I
---
T
V
I
L
W
A
Y
V
F
L
------
M
----
A
E
-----
R
I
E
I
K
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--
I
S
P
L
----
I
I
A
Y
T
L
I
Y
T
--
F
I
I
-------
N
S
-----------------
R
W
----
D
G
------
E
K
L
N
V
S
P
--
N
L
I
----------
L
---
T
P
F
G
I
I
S
A
L
F
I
A
Y
G
F
A
V
I
S
V
----------------------
14
Fugue
75.34
15%
-160
- C2 -
4NTC
1
?
A:
[2-326]
M
S
I
G
---------
K
----
L
L
S
N
G
-
A
L
L
V
D
V
L
I
I
G
A
------
G
P
A
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L
S
T
-
A
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V
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----------
D
S
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Q
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M
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N
V
L
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--
W
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P
A
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----
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A
A
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T
T
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Y
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T
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I
----
E
A
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--
Q
L
F
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A
R
D
-
N
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---
G
H
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W
Y
G
--
R
---------
K
V
V
L
A
-
T
G
V
R
D
------------
I
P
L
D
I
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G
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C
W
A
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---
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L
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L
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----
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T
N
G
N
E
Q
----------------
L
A
K
-
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Q
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A
A
----------
E
E
-----------
S
P
V
G
A
S
G
L
--
K
F
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---
A
R
---
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I
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F
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------
A
----
K
T
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I
V
H
L
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S
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--
T
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G
F
----
L
V
Y
N
P
Q
T
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N
G
P
F
A
-------
K
Q
L
ALNMTEGGDI
L
T
T
---
P
P
----
F
Y
------
E
T
S
V
P
G
V
F
A
V
G
D
----------
C
ATP
L
K
A
V
T
P
A
V
S
M
G
S
L
A
A
G
G
L
V
A
Q
L
Q
A
Q
AL---------------
20
Fugue
67.50
10%
-152
- C2 -
1UJN
-
?
A:
[1-347]
M
Q
R
L
E
V
------
R
E
P
V
P
Y
P
I
L
V
G
-
E
G
V
L
K
E
V
P
P
L
A
------
G
P
A
A
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L
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F
A
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A
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A
----------
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----
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L
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G
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--
A
-----
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----
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Y
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K
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---------
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W
L
A
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L
P
R
N
A
T
L
L
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----
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G
G
T
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L
G
--
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F
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A
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V
A
---
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L
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T
--
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---------
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L
A
I
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D
A
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V
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G
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T
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G
I
N
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G
-----
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-----
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L
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--
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----
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L
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A
F
-
L
A
-
R
A
V
A
----------------
V
K
V
-
R
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T
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----------
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L
-----------
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G
K
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L
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G
H
T
L
G
H
A
L
---
E
A
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T
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H
A
L
P
H
------
G
----
M
A
V
A
Y
G
L
L
Y
A
A
L
L
--
G
R
A
L
GGED
L
L
P
P
V
R
R
L
L
--
L
W
L
SPPPLPP
L
A
F
------------
E
---
D
L
----
L
P
------
Y
L
S
L
H
W
V
V
P
L
A
P
----------
G
---
R
L
V
V
R
P
L
P
E
G
L
L
R
E
A
F
A
A
W
R
E
E
L
K
G
L
GLL-------------
17
Fugue
55.60
10%
-146
- C3 -
2CL2
1
?
A:
[1-298]
---
A
T
Y
------
H
L
----
E
D
N
W
V
G
S
A
F
L
S
T
F
T
H
E
A
IADPTH
G
R
V
N
Y
V
D
-
Q
A
T
A
L
A
K
N
L
T
Y
A
S
G
----------
D
T
L
I
L
R
A
D
H
T
T
----------------------
T
L
S
P
S
G
P
---------
G
R
N
S
V
R
I
R
S
I
--
K
T
Y
T
T
----
H
V
A
V
F
D
V
R
H
--
M
---
P
Q
G
C
G
--
T
---
W
P
A
A
W
E
T
D
E
---------
G
D
W
P
N
-
G
G
E
V
D
I
I
E
-
G
V
N
D
Q
S
P
N
A
M
T
L
H
T
G
-
A
N
C
A
M
P
A
S
R
T
M
T
G
H
A
T
N
NN
C
-
D
V
N
T
D
G
--
N
T
G
C
G
V
Q
-----
A
P
T
A
N
S
Y
-
G
P
S
F
N
A
N
G
G
G
W
Y
A
M
--
E
R
T
NS
F
I
K
V
W
-
F
F
P
R
N
A
G
----------------
N
V
P
-
N
D
I
A
S
G
----------
P
A
-----------
T
I
N
T
D
N
W
G
--
T
P
T
A
F
F
P
N
---
T
N
C
D
I
G
S
H
F
D
------
A
----
N
N
I
I
I
N
L
T
F
C
G
D
W
--
A
G
Q
A
----
S
I
F
N
G
A
G
C
P
--
G
S
C
-------
V
D
Y
------------
V
---
N
N
----
N
P
------
S
A
F
A
N
A
Y
W
D
I
A
S
----------
V
---
R
V
Y
Q
--------------------------------------
21
Fugue
52.72
8%
-135
- C2 -
2BM8
-
?
A:
[2-233]
N
D
Y
S
R
Q
------
N
F
----
Q
------------------------------
D
L
N
L
F
R
G
L
G
E
D
P
A
Y
----------
H
P
P
V
---
L
T
D
R
P
R
D
W
P
L
D
--
R
-----
W
A
----
E
A
P
R
D
L
G
Y
---------
S
D
F
S
P
Y
Q
W
R
G
--
L
R
M
L
K
----
D
P
D
T
Q
A
V
Y
H
--
D
M
L
W
E
L
R
P
R
--
T
---
I
V
E
L
---------------------------------------------------
G
V
Y
N
G
G
S
L
A
W
F
--
R
-
D
L
T
K
I
M
GI
D
C
Q
V
I
G
I
-----
D
R
D
L
S
R
C
-
Q
I
P
A
S
D
M
E
N
I
T
L
H
Q
--
G
----
D
C
S
D
L
-
T
T
F
E
H
L
R
----------------
E
M
A
H
P
L
I
F
I
D
----------
N
A
-----------
H
A
N
T
F
N
I
M
--
K
W
A
V
D
H
L
L
EEG
D
Y
F
I
I
E
D
M
I
P
------
Y
----
W
Y
R
Y
-----------------------------------------
A
P
------------
Q
---
L
F
----
S
E
------
Y
L
G
A
F
R
D
V
L
S
M
D
----------
M
---
L
Y
A
N
A
S
S
Q
L
D
-----
R
G
V
L
R
R
V
A
-------------------
1
PsiBlast_PDB
33.58
29%
25
- C4 -
3S8E
-
?
A:
[239-289]
--------------------------------------------------------------
Y
----------
G
S
S
L
E
F
T
E
L
L
T
L
V
N
R
K
V
D
--
Q
-----
R
R
----
V
------
D
--------------
S
A
I
G
K
--
K
Q
V
P
C
----
F
A
S
M
L
T
K
K
L
--
H
F
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.26
15%
70
- C4 -
1RQJ
3
ISPA_ECOLI
A:
[216-260]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
A
F
Q
----------------
V
Q
D
-
D
I
L
D
V
V
----------
G
D
TATLGKRQG
A
D
Q
Q
L
G
K
S
T
Y
--
P
A
L
L
G
L
E
Q
---
A
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
17.29
12%
99
- C4 -
1V4E
-
?
A:
[198-240]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
Y
Q
----------------
M
F
D
-
D
I
M
D
F
A
G
MEKIGKDGF
L
D
-----------
L
K
N
G
V
A
S
F
--
P
L
V
T
A
M
E
K
---
F
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
12.41
9%
65
- C4 -
3KRA
-
?
B:
[63-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
--
A
----
A
A
A
I
H
-
L
V
H
A
A
A
Y
----------------
V
H
E
-
H
L
P
L
T
D
----------
G
S
-----------
R
P
V
S
K
P
A
I
--
Q
H
K
Y
G
P
N
V
---
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
7.37
21%
45
* C4 *
1VF5
-
PETL_MASLA
E:
[1-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L
G
A
V
F
Y
------
I
----
V
F
I
A
L
F
F
G
I
A
V
G
I
--
I
F
A
I
----
K
S
I
K
L
I
--------------------------------------------------------------------------------------------------------------------