@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 149_tIV_ORYSA: (2014-05-02 )
VCNMSNDEFMKCQPAAAATSNPTTNPSAGCCSALSHADLNCLCSYKNSPWLSIYNIDPNRAMQLPAKCGLTMPANC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-.----......---.10..--......20-.---...-----------..----.---------..30....-----.--------.-----.------------.----------40--..--------------------..---------..---..-----.50--------------..-----.---.----.---------..---------..60...--.....70---....--..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-C----NMSNDE---
F
M
K
CQ--PAAAATS--N---PTT-----------NP----S---------
A
G
C
C
S
A
L
S-----H--------A-----D------------
L
----------
N
---
C
L
--------------------
C
S---------YK---NS-----P
W
---------------
L
S
-----
I
---
Y
----N---------ID---------PNRAMQL--
P
A
KCGL----TMPA--NC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
94.76
50%
-101
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AID
L
-
C
----
G
M
S
Q
D
E
---
L
N
E
C
K
--
P
A
V
--
S
K
--
E
---
N
P
T
-----------
S
P
----
S
---------
Q
P
C
C
T
A
L
Q
-----
H
--------
A
-----
D
------------
F
----------
A
---
C
L
--------------------
C
G
---------
Y
K
---
N
S
-----
P
W
---------------
L
G
-----
S
---
F
----
G
---------
V
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
----
A
N
A
P
--
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
94.21
51%
-98
- C3 -
2RKN
2
DIRL1_ARATH
A:
[5-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
M
S
Q
D
E
---
L
N
E
C
K
--
P
A
V
S
K
E
N
--
P
-----
T
-----------
S
P
----
S
---------
Q
P
C
C
T
A
L
Q
-----
H
--------
A
-----
D
------------
F
----------
A
---
C
L
--------------------
C
G
---------
Y
K
---
N
S
-----
P
W
---------------
L
G
-----
S
---
F
----
G
---------
V
D
---------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
----
A
N
A
P
--
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
75.82
22%
-108
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
C
YPGQ
A
F
Q
V
P
A
---
L
P
A
C
R
--
P
L
L
R
L
Q
C
--
N
---
G
S
Q
-----------
V
P
----
E
A
V
L
------
R
D
C
C
Q
Q
L
A
-----
H
--------
I
-----
S
------------
E
----------
W
---
C
R
--------------------
C
G
A
L
Y
S
M
L
D
S
M
Y
K
---
E
H
-----
G
A
---------------
F
P
--------------
R
---------
C
R
R
E
V
V
-----
K
L
T
A
A
S
I
--
T
A
V
C
R
L
----
P
I
V
V
--
D
A
SGDGAYVC
K
D
V
A
A
YPDA---------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
66.74
29%
-66
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[3-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
Q
V
Q
G
N
---
L
A
Q
C
I
--
G
F
L
Q
K
G
G
--------------------
V
V
----
P
---------
P
S
C
C
T
G
V
K
-----
N
I
L
NSSRTT
A
-----
D
------------
R
----------
R
A
V
-
C
S
--------------------
C
L
----------
K
---
A
A
----------------------
A
G
-----
A
---
V
R---
G
---------
I
N
---------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
----
N
I
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
65.69
26%
-83
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[4-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
Q
V
S
S
S
---
L
A
P
C
I
--
P
Y
V
R
G
G
G
--------------------
A
V
----
P
---------
P
A
C
C
N
G
I
R
-----
N
--------
V
-----
N
N
L
A
RT
T
P
D
R
Q
--
A
----------
A
---
C
N
--------------------
C
----------
L
K
---
Q
L
----------------------
S
A
-----
S
---
V
P---
G
---------
V
N
---------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
----
S
I
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
65.36
25%
-78
- C3 -
1T12
-
NLTP1_TOBAC
A:
[4-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
Q
V
T
S
N
---
L
A
P
C
L
--
A
Y
L
R
N
T
G
---------------------
P
----
L
---------
G
R
C
C
G
G
V
K
-----
A
--------
L
-----
V
------------
N
S
A
RT
T
E
D
R
Q
I
A
---
C
T
--------------------
C
----------
L
K
---
S
A
----------------------
A
G
-----
A
---
I
S---
G
---------
I
N
---------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
----
N
I
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
64.27
25%
-73
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
----
G
Q
V
A
S
A
---
I
A
P
C
I
--
S
Y
A
R
G
Q
G
--------
S
-----------
G
P
----
S
---------
A
G
C
C
S
G
V
R
-----
S
--------
L
-----
N
N
A
ART
T
A
D
R
R
A
A
C
----------
N
---
C
L
--------------------
K
N
---------
A
A
---
A
G
-----------------------------
V
---
S
----
G
---------
L
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
----
S
I
P
Y
--
T
I
STSTDCSRVN----------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
62.96
19%
-109
- C3 -
1HYP
-
?
?:
[6-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
C
P
D
---
L
S
I
C
L
--
N
I
L
G
G
S
---------
L
-----------
G
T
----
V
---------
D
D
C
C
A
L
I
G
-----
G
L-------
G
-----
D
------------
I
----------
E
A
I
V
C
L
--------------------
C
I
Q
--------
L
R
---
A
-----------------------
L
G
-----
I
---
L
----
N
---------
L
----------
N
R
N
L
Q
L
I
--
L
N
S
C
G
R
----
S
Y
P
S
NA
T
C
PRT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
59.86
30%
-57
- C3 -
1AFH
-
NLTP_MAIZE
A:
[4-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
Q
V
A
S
A
---
I
A
P
C
I
--
S
Y
A
R
G
Q
G
--
S
-----------------
G
P
----
S
---------
A
G
C
C
S
G
V
R
-----
S
--------
L
-----
N
------------
N
A
A
RT
T
A
D
R
R
A
A
---
C
N
--------------------
C
----------
L
K
---
N
A
----------------------
A
A
-----
G
---
V
S---
G
---------
L
N
---------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
----
S
I
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
59.47
29%
-73
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
---
L
A
V
C
A
--
S
A
I
L
S
G
A
--------------------
K
P
----
S
---------
G
E
C
C
G
N
L
R
-----
A
--------
Q
-----
Q
-----------------------
G
---
C
F
--------------------
C
Q
---------
Y
A
---
K
D
-----
P
T
---------------
Y
G
-----
Q
--------
Y
---------
I
R
---------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
----
A
V
P
---
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
58.86
21%
-60
* C3 *
1HSS
-
IAA1_WHEAT
A:
[14-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
A
---
L
P
A
C
R
--
P
L
L
R
L
Q
C
--
N
GSQ
V
P
E
-----------
A
V
----
L
---------
R
D
C
C
Q
Q
L
A
-----
H
--------
I
-----
S
------------
E
----------
W
---
C
R
--------------------
C
G
---------
A
L
---
Y
S
-----
M
L
---------------
D
S
M
Y
K
E
H----------GAFPRCR
R
E
V
V
---------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
----
P
I
V
V
--
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
58.75
26%
-82
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
-
C
----
N
--
A
G
Q
---
L
T
V
C
T
--
G
A
I
------
A
---
G
G
A
-----------
R
P
----
T
---------
A
A
C
C
S
S
L
R
-----
A
--------
Q
-----
Q
-----------------------
G
---
C
F
--------------------
C
Q
---------
F
A
---
K
D
-----
P
R
---------------
Y
G
-----
R
---
Y
--------------
V
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
----
A
L
P
T
--
C
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
SP3
58.44
25%
-98
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
-
C
----
N
A
G
Q
-----
L
T
V
C
T
--
G
A
I
A
G
G
---------
A
-----------
R
P
----
T
---------
A
A
C
C
S
S
L
R
-----
A
--------
Q
-----
Q
-----------------------
G
---
C
F
--------------------
C
Q
---------
F
A
---
K
D
-----
P
R
---------------
Y
G
-----
R
---
Y
--------------
V
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
----
A
L
-
P
--
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
58.30
19%
-60
- C3 -
1BEA
-
ITRF_MAIZE
A:
[14-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
N
P
---
L
P
S
C
R
--
W
Y
V
T
S
R
T
CG
I
---
G
P
R
-----------
L
P
W
P
E
L
K
---------
R
R
C
C
R
E
L
A
-----
D
--------
I
-----
P
------------
A
----------
Y
---
C
R
--------------------
C
T
---------
A
L
---
S
I
-----
L
M
---------------
D
G
-----
A
I
P
P
G
PDAQ
L
E
G
R
L
-----
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
----
A
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
58.02
22%
-48
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[3-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
G
H
V
D
S
L
---
V
R
P
C
L
--
S
Y
V
Q
G
G
---
P
-----------------
G
P
----
S
---------
G
Q
C
C
D
G
V
K
-----
N
--------
L
-----
H
------------
N
Q
ARS
Q
S
D
R
Q
S
A
---
C
N
--------------------
C
L
---------
K
G
---
I
A
-----
R
G
---------------
I
----------
H
----
N
---------
L
N
---------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
----
N
L
P
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
57.39
29%
-88
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[3-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
----
N
A
G
--
Q
---
L
T
V
C
T
--
G
A
I
A
G
G
A
--------------------
R
P
----
T
---------
A
A
C
C
S
S
L
R
-----
A
--------
Q
------------------
Q
----------
G
---
C
F
--------------------
C
Q
---------
F
A
---
K
D
-----
P
R
---------------
Y
G
-----
R
--------
Y
---------
V
N
---------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
----
A
L
P
---
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
56.78
22%
-72
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
-
C
----
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
--
M
Y
L
M
K
N
L
--
G
---
E
R
S
-----------
Q
V
----
S
PR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
L
K
-----
N
--------
L
-----
D
------------
E
----------
K
---
C
M
--------------------
C
P
---------
A
I
---
M
M
M
L
N
EP
M
W
---------------
I
R
-----
M
---
R
----
D
---------
Q
V
---------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
----
M
-
S
Q
--
P
C
QM------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
54.72
16%
-89
- C3 -
1IGN
-
RAP1_YEAST
A:
[8-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
A
S
-
F
----
T
D
E
E
D
E
---
F
I
------
L
D
V
V
R
K
--
N
---
P
T
R
-----------
R
T
----
T
---------
H
T
L
Y
D
E
I
S
H
Y
V
PN
H
--------
T
-----
G
------------
N
----------
S
---
I
R
--------------------
H
R
---------
F
R
V
YL
S
K
-----
R
L
---------------
E
Y
-----
V
---
Y
----
E
---------
V
D
---------
K
F
G
K
L
V
R
--
D
D
D
G
N
L
I
K
T
K
V
L
P
P
--
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
SP3
52.67
15%
-82
- C3 -
1A32
-
?
?:
[2-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
Q
E
R
---
K
R
E
I
I
--
E
Q
F
K
V
H
E
--
N
---
D
T
G
-----------
S
P
----
E
---------
V
Q
I
A
I
L
T
E
-----
Q
--------
I
-----
N
------------
N
L
N
--------
E
---
H
L
--------------------
R
V
---------
H
K
---
K
D
-----
H
H
S
R
R
G
L
L
K
M
V
G
K
R
R
R
L
L
A
-----
Y
---
L
R
---
N
---------
K
D
---------
V
A
R
Y
R
E
I
--
V
E
K
L
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
52.35
10%
-76
- C2 -
1XOC
1
APPA_BACSU
A:
[17-520]
K
P
Q
Q
G
G
D
L
V
V
G
S
IGEPTLFNSLYSTD
D
A
S
T
D
I
E
N
M
L
Y
SFL
T
K
T
D
EKL
N
V
K
L
S
LAE
S
I
K
E
L
DGGL
A
Y
D
V
K
I
K
K
GVKFHDG
K
E
L
T
A
D
D
V
V
F
T
Y
S
V
PLSKDYKGERGSTYEMLK
S
V
E
K
KGDY
E
V
L
F
K
L
KYKDGNFYNNALDSTAILPKHILGNVPIADLEENEFNRK
K
P
I
G
SGP
F
K
F
K
E
WKQG
Q
Y
I
K
L
E
ANDDYFEGRPYLDTVTYKVIPD
A
N
A
A
E
A
Q
L
Q
A
GDIN
F
-
F
----
N
V
P
A
T
D
---
Y
K
T
A
E
K
F
N
N
L
K
I
V
T
--
D
---
L
A
L
S
Y
V
Y
I
G
W
N
EKN
E
L
----
F
---------
K
D
--
K
K
V
R
-----
Q
--------
A
L
T
T
A
L
D
------------
R
----------
E
---
S
I
V
S
Q
VLDGD
G
E
V
A
YIPESPLS
W
N
---------
Y
P
---
K
D
-----
I
D
---------------
V
P
-----
K
---
F
----
E
---------
Y
N
---------
E
K
K
A
K
Q
M
--
L
A
E
A
G
W
----
K
D
T
N
--
G
D
G
I
L
D
K
DGKKF
S
F
T
L
K
T
N
Q
GN
K
V
R
E
D
I
A
V
V
V
Q
E
Q
L
K
K
I
G
I
E
V
K
T
Q
I
V
E
W
S
A
L
V
E
Q
M
NPPNWDFDAMVMGWSLSTFPDQYDIFHSSQIKKGLNYVWYKN
A
E
A
D
K
L
M
K
D
A
K
S
ISD
R
K
Q
Y
S
K
E
Y
E
Q
I
Y
Q
K
I
A
E
D
QPYTF
L
Y
Y
P
N
N
H
M
A
M
PENLEG
Y
K
Y
H
PKRDLYNIEK
W
W
L
A
K
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VCNMSNDE
F
M
K
CQPAAAATSNPTTNPS
A
G
C
C
S
A
L
SHAD
L
N
C
L
C
SYKNSP
W
L
S
I
Y
NIDPNRAMQL
P
A
KCGLTMPANC
49
96.19
100%
-122
- C- -
M049
-
A:
[1-120]
V
C
N
M
S
N
D
E
F
M
K
C
Q
P
A
A
A
A
T
S
N
P
T
T
N
P
S
A
G
C
C
S
A
L
S
H
A
D
L
N
C
L
C
S
Y
K
N
S
P
W
L
S
I
Y
N
I
D
P
N
R
A
M
Q
L
P
A
K
C
G
L
T
M
P
A
N
C
45
93.12
100%
-111
- C- -
M045
-
A:
[1-99]
V
C
N
M
S
N
D
E
F
M
K
C
Q
P
A
A
A
A
T
S
N
P
T
T
N
P
S
A
G
C
C
S
A
L
S
H
A
D
L
N
C
L
C
S
Y
K
N
S
P
W
L
S
I
Y
N
I
D
P
N
R
A
M
Q
L
P
A
K
C
G
L
T
M
P
A
N
C
42
91.63
100%
-106
- C- -
M042
-
A:
[1-110]
V
C
N
M
S
N
D
E
F
M
K
C
Q
P
A
A
A
A
T
S
N
P
T
T
N
P
S
A
G
C
C
S
A
L
S
H
A
D
L
N
C
L
C
S
Y
K
N
S
P
W
L
S
I
Y
N
I
D
P
N
R
A
M
Q
L
P
A
K
C
G
L
T
M
P
A
N
C
48
85.81
100%
-109
- C- -
M048
-
A:
[1-120]
V
C
N
M
S
N
D
E
F
M
K
C
Q
P
A
A
A
A
T
S
N
P
T
T
N
P
S
A
G
C
C
S
A
L
S
H
A
D
L
N
C
L
C
S
Y
K
N
S
P
W
L
S
I
Y
N
I
D
P
N
R
A
M
Q
L
P
A
K
C
G
L
T
M
P
A
N
C