@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0141: (2016-03-12 )
METIKQEVRESIVKGIIAGYKDYVNERNEVKKRMVISDAYAFTKSNHIESQVAKHLENFVKYIKENAGPSWKYLKFIFNKDEEKNNIMFILKNEDYFDEKNVSVGKSLVADKNPKSKNYLEVLMAKNRDINFGTVGEDFEIGHQMTADSILFNIKEGSNRDINSYFLIITYRIDKESKQLAAIKQWLPNPETNSAIMVDDLTELIEKVIVEREDYHIDEEELEVLKNDGELELIDVEHAFGISIDEGNDMIESER
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------......----...10....---....20..-------...--...30-......--...40..-..-.-..--.50......---------.--.------60.....---------...70..---......------------80---...------...--..90-..-..-..---..100..---.....110..-.-.....-.120-------.....----..130----..-----...--------------..----------..140-------------......--.150.......160..-...-..170-.....--------...180---........---190..-.....200..-.....210-...----------------.------.----------....220......------.230-----..----....-.240...-.---.----.-.250-----....---------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------ME
T
I
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Q
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E
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---
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--
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--
K
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I--SDAYAFT-KS-N-
H
I
--
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Q
V
A
K
H
L
E
---------
N
--
F
------
V
K
Y
I
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EN---------AGPSW
K
Y
---
L
K
F
I
FN------------KD---EEK------N
N
I
--
M
F
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L-KN-ED-YF---DEKNVSV---
G
K
S
L
VA--DK-N-PK
S
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N
-
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-------
L
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AKN----RDI------NF-----GTV--------------GE----------DFEIG-------------HQM
T
A
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--
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IKEGSNRD
I
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-
Y
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-
I
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--
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IDKE--------
S
K
Q
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A
----
A
I
K
Q
WLPN---PETN
S
-
A
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D
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L
-
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V---ERE----------------D------Y----------HI
D
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LKND------G
E
L
E
-----
L
I
----
D
VEH-AF
G
I
S
ID-E---G----N-DMI------ESER---------------------------------------------------------------
23
Fugue
74.86
18%
21
- C2 -
4OVY
9
?
A:
[1-305]
--------------------------------------------------------------------------------------------------------------------------------------------------
E
E
P
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P
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WNDS
A
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---
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----
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---------------------------------------------------------------
31
Fugue
73.15
17%
-27
- C2 -
5CPC
-
?
A:
[30-317]
-------------------------------------------------------------------------------------------------------------------------------------------K
A
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---
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----------------
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------
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----------
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-----------
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-----
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----
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L
H
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-
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---
D
GCSR
N
-
I
L
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------
T
------------------------------------------------------------------
27
Fugue
72.66
12%
-21
- C2 -
3NUT
5
?
A:
[8-247]
-------------------------------------------------------------------------------------------------------------------------------------S
G
W
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----
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----------------------------------------------------------------
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----
G
-
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W
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------
Y
T
P
R
---------------------------------------------------------------
30
Fugue
70.50
17%
45
- C2 -
4WWX
-
RAG2_MOUSE
X:
[1-349]
-----------------------------------------------------------------------------------------------------------------------------------------------SLQ
M
V
T
V
G
H
----
N
I
A
L
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FSL
M
N
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-------
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------
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-----
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--------------
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-------------
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T
T
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----------------
A
------
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----------
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C
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---
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----
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VGGYQL
E
N
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RMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGTIFLGIPGAMSEAFYFYTLRC
26
Fugue
67.91
12%
-2
- C2 -
3UIF
3
?
A:
[2-331]
------------------------------------------------------------------------------------------------------------------------------------------VED
L
K
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V
R
I
A
S
V
A
T
----
N
V
G
G
K
T
V
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A
---
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S
A
S
L
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V
N
-------
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------
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---------
A
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--
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---
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------------
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---
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------
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--
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K
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------
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--------------
A
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A
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G
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----
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W
R
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A
ENLY-----------------------------------------------------
25
Fugue
65.18
12%
-8
- C2 -
2JAK
-
2A5G_HUMAN
A:
[30-372]
--------------------------------------------------------------------------------------------------------------------------------------------------
I
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A
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----------
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-------------
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---
A
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----------------
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------
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A
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P
I
MFP-------------------------------------
22
Fugue
63.74
15%
13
- C3 -
4MT0
1
?
A:
[1-445]
CTMIP
Q
Y
E
Q
P
KVEVAETFQNDTSVSSIRAVDLG
W
H
D
Y
F
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P
R
L
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L
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G
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R
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L
I
E
S
A
K
---------
A
--
D
------
Y
A
H
A
A
R
S
---------
R
E
Q
A
R
N
A
---
L
A
T
L
I
N
------------
R
P
---
I
P
E
------
D
L
P
--
A
G
L
P
-
L
D
-
K
Q
-
F
F
---
V
E
K
L
P
A
G
---
L
S
S
E
V
L
--
L
D
-
R
-
P
D
I
R
A
-
A
E
H
A
-------
L
K
Q
A
N
----
A
N
I
G
A
A
R
A
A
F
F
-----
P
S
I
--------------
R
L
----------
T
G
S
V
G
-------------
T
G
S
V
E
L
--
G
G
L
F
K
S
G
T
G
V
W
A
F
A
P
S
-
I
T
L
P
I
F
T
W
--
G
T
N
K
A
--------
N
L
D
V
A
----
K
L
R
Q
Q
A
Q
I
---
V
A
Y
E
S
-
A
--
V
Q
S
A
F
Q
D
-
V
A
N
A
L
A
---
A
R
E
----------------
Q
------
L
----------
D
K
A
Y
D
A
L
S
K
Q
S
R
A
------
S
K
E
A
-----
L
R
----
L
V
G
L
-
R
Y
K
H
G
V
S
-
G
---
A
----
L
-
D
L
L
------
D
A
E
R
S
S
Y
S
A
E
G
A
A
L
S
A
Q
L
T
R
A
E
N
L
A
D
L
Y
K
A
L
GGGLKRDTQT--------------------------
8
PsiBlast_PDB
58.76
36%
-8
- C3 -
4K38
5
ANSME_CLOP1
A:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_CBE
58.45
36%
-15
- C3 -
4K39
3
ANSME_CLOP1
B:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
58.43
36%
-13
- C3 -
4K38
5
ANSME_CLOP1
B:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
58.15
36%
2
- C3 -
4K36
2
ANSME_CLOP1
B:
[166-231]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.03
36%
-8
- C3 -
4K37
3
ANSME_CLOP1
A:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.86
36%
-2
- C3 -
4K36
2
ANSME_CLOP1
A:
[166-222]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
57.84
36%
-6
- C3 -
4K37
3
ANSME_CLOP1
B:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
57.24
36%
-7
- C3 -
4K39
3
ANSME_CLOP1
A:
[166-214]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
T
S
N
T
A
R
H
V
N
---------
K
--
V
------
Y
K
Y
F
K
E
K
------------
D
F
K
F
---
L
Q
F
I
N
C
------------
L
D
PLY
E
E
K
------
G
K
Y
--
N
Y
S
L
-
K
P
-
K
D
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
53.70
30%
41
- C3 -
2P22
1
SRN2_YEAST
C:
[137-191]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
--
K
L
D
E
E
--------
S
S
Q
L
E
----
T
T
-----------
T
R
S
-
I
D
S
A
D
D
L
D
Q
F
-
I
K
N
Y
L
D
---
I
R
T
----------------
Q
------
Y
----------
H
L
R
R
E
K
L
A
T
W
D
K
Q
------
G
N
L
K
---------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
52.09
30%
154
- C- -
2CAZ
-
SRN2_YEAST
C:
[158-203]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
--
K
L
D
E
E
--------
S
S
Q
L
E
----
T
T
-----------
T
R
S
-
I
D
S
A
D
D
L
D
Q
F
-
I
K
N
Y
L
D
---
I
R
T
----------------
Q
------
Y
----------
H
L
R
R
E
K
L
A
------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.62
30%
70
- C3 -
2F66
1
SRN2_YEAST
C:
[27-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
--
K
L
D
E
E
--------
S
S
Q
L
E
----
T
T
-----------
T
R
S
-
I
D
S
A
D
D
L
D
Q
F
-
I
K
N
Y
L
D
---
I
R
T
----------------
Q
------
Y
----------
H
L
R
R
E
K
L
A
T
W
D
---------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
48.17
39%
45
- C3 -
4UER
-
?
I:
[79-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
Q
A
I
A
K
G
---
L
V
A
Y
H
Q
K
Y
-------
V
D
E
Q
S
K
N
E
L
--
K
K
A
F
T
S
--
Y
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.99
34%
15
- C4 -
3BH0
-
?
A:
[381-425]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
D
------
A
D
I
--
I
E
F
L
-
Y
R
-
D
D
-
Y
Y
---
D
------------------
K
-
E
-
S
E
S
K
N
-
I
V
E
V
-------
I
I
A
K
H
----
R
D
G
------
P
V
-----
G
T
V
--------------
S
L
----------
A
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------