@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1404: (2016-03-25 )
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------.....-.-...---10........20....-....30.-----..--.....40........50.......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------MSKTV-V-RKN---
E
S
L
E
D
A
L
R
R
F
K
R
S
VSK-SG
T
I
Q
E
V
-----
R
K
--
R
E
F
YEKPSV
K
R
K
K
K
S
E
A
A
R
KRKFK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
77.27
27%
-10
* C1 *
5AJ3
-
?
U:
[8-65]
-------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
-
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
--
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
73.64
25%
-30
- C1 -
4U1D
-
EIF3A_YEAST
A:
[9-496]
-----------------------------------------------------------------------FR
P
E
N
A
I
K
R
A
D
E
L
I
S
V
GE
K
Q
A
A
L
Q
S
L
H
D
F
I
T
ARRIRWATPSTV
E
P
V
V
F
K
F
L
E
I
G
V
E
L
-
K
K
G
---
K
L
L
K
D
G
L
H
Q
Y
K
K
L
I
Q
G
S
T
E
G
L
V
S
V
-----
G
A
V
A
R
K
F
I
D
L
--
V
E
S
K
I
A
S
E
Q
T
R
A
D
E
L
Q
K
Q
E
I
DA
I
T
S
W
L
R
F
T
W
E
S
Y
R
A
V
L
D
L
L
RNNALL
E
I
T
Y
S
G
V
V
K
K
T
M
H
F
C
L
K
Y
QR
K
N
E
F
K
R
L
A
E
M
L
R
Q
H
L
D
A
A
N
Y
Q
Q
SKSGNNLVDLSD
A
D
T
L
Q
R
Y
L
D
Q
R
F
Q
Q
V
D
V
S
V
K
L
EL
W
H
E
A
Y
R
S
I
E
D
V
F
H
L
M
K
I
SKRAPK
P
S
T
L
A
N
Y
Y
E
N
L
V
K
V
F
F
V
S
GD
P
L
L
H
T
T
A
W
K
K
F
Y
K
L
Y
S
T
NPRAT
E
E
E
F
K
T
Y
S
S
T
I
F
L
S
A
I
S
TQLDE
I
P
S
I
GYDPH
L
R
M
Y
R
L
L
NLDAKPT
R
K
E
M
L
Q
S
I
I
E
DESIYGKVD
E
E
L
K
E
L
Y
D
I
IEVNFDVDT
V
K
Q
Q
L
E
N
L
L
V
K
L
S
S
K
T
Y
F
S
Q
Y
I
A
P
L
R
D
V
I
M
R
R
V
F
V
A
A
S
Q
K
F
TTVS
Q
S
E
L
Y
K
L
A
TLPAPL
D
L
S
A
W
D
I
E
K
S
L
L
Q
A
A
V
E
DY
V
S
I
T
I
DHESA
K
V
T
F
A
K
3
PsiBlast_PDB
67.93
57%
25
- C1 -
4A2I
-
RS21_ECOLI
U:
[5-51]
-------------------------------------------------------------------------------------------------------------------------------
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
--
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
67.63
53%
18
- C1 -
4ADV
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------------------------------------------------------------------------------
I
K
-
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
--
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
62.49
27%
22
- C1 -
3J6V
-
RT21_BOVIN
U:
[8-65]
-------------------------------------------------------------------------------------------------------------------------
I
A
R
T
V
-
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
--
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
60.32
27%
23
- C1 -
3J6V
-
RT21_BOVIN
U:
[1-87]
------------------------------------------------------------------------------------------------------------------MAKHLKF
I
A
R
T
V
-
M
-
V
Q
E
---
G
N
V
E
G
A
Y
R
T
L
N
R
I
L
T
M
-
D
G
L
I
E
D
I
-----
K
R
--
R
R
Y
Y
E
K
P
C
R
R
R
Q
R
E
S
Y
E
T
C
R
R
I
Y
N
MEMARKINFLMRKNRADPWQGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
58.12
55%
51
- C1 -
2YKR
-
RS21_ECOLI
U:
[3-53]
----------------------------------------------------------------------------------------------------------------------------
I
K
-
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
--
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.86
57%
51
- C1 -
2YKR
-
RS21_ECOLI
U:
[5-51]
-------------------------------------------------------------------------------------------------------------------------------
V
-
R
E
N
---
E
P
F
D
V
A
L
R
R
F
K
R
S
C
E
K
-
A
G
V
L
A
E
V
-----
R
R
--
R
E
F
Y
E
K
P
T
T
E
R
K
R
A
K
A
S
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
56.14
22%
47
- C1 -
2KL8
-
?
A:
[1-85]
-----------------------------------------------------------------------------------------------------------------------M
E
M
D
I
R
F
-
R
G
D
D
L
---
E
A
F
E
K
A
L
K
E
M
I
R
Q
A
R
K
F
A
G
T
V
T
Y
T
L
D
GN
D
L
E
--
I
R
I
T
G
V
P
E
Q
V
R
K
E
L
A
K
E
A
E
R
L
A
K
E
F
N
I
T
V
T
Y
T
I
RLEHHHHHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.23
18%
56
- C1 -
2JHN
8
?
A:
[1-295]
M
W
R
I
E
L
KHAVN
W
E
L
K
M
K
F
FVLPELPTP
D
V
V
E
SG
V
W
R
R
A
I
V
L
DG
R
A
V
A
V
M
A
Y
P
ESER
T
I
V
V
E
G
NFENRE
W
E
A
V
R
R
K
L
V
E
Y
L
GLQNP
E
E
L
Y
R
F
M
D
G
D
E
K
L
R
M
L
K
N
R
F
YGF
G
R
A
G
L
MSMS
V
F
E
G
I
A
K
A
I
-
I
-
Q
Q
Q
---
I
S
F
V
V
A
E
K
L
A
A
K
I
V
G
R
-
F
G
D
E
V
E
W
-----
N
G
--
L
K
F
Y
G
F
P
T
Q
E
A
I
L
K
A
G
V
E
G
L
R
E
C
G
LS
R
R
K
A
E
L
I
V
E
I
A
K
EENLEELKEWG
E
E
E
A
Y
E
Y
L
T
SFKGIG
R
W
T
A
E
L
V
L
S
IALGKNVFPADD
L
G
V
R
R
A
V
S
R
L
YFNGEIQS
A
E
K
V
R
E
I
A
R
E
RFGRF
A
R
D
I
L
F
Y
L
F
L
Y
D
R
F
FSKELV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
46.67
10%
-24
- C1 -
3WZ4
3
?
A:
[42-71]
------------------------------------------------------------------------------------------------------------------------------------------
A
E
G
W
D
Q
F
L
G
A
L
E
Q
-
S
N
N
L
D
A
V
-----
K
A
--
K
K
L
V
V
S
A
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.27
10%
6
- C1 -
1PTF
-
PTHP_ENTFA
A:
[66-86]
----------------------------------------------------------------------------------------------------------------------------------
D
G
---
A
D
E
A
E
G
M
A
A
I
V
E
T
L
Q
K
-
E
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
44.33
14%
-11
- C1 -
1Q9U
4
?
A:
[5-30]
--------------------------------------------------------------------------------------------------------------------------
F
H
Y
T
-
V
-
D
V
S
---
T
G
M
N
E
T
I
E
R
L
E
E
S
L
K
Q
-
E
G
F
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
41.98
10%
-18
- C1 -
3HPW
-
C:
[11-31]
----------------------------------------------------------------------------------------------------------------------------------------
E
N
Q
E
G
M
A
E
V
A
R
F
I
E
M
-
N
G
S
F
A
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
41.44
15%
-8
- C1 -
1HYN
-
B3AT_HUMAN
P:
[56-348]
---------------------------------------------------------------KVYVELQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHLSHLTFWSLLELRRV
F
T
K
G
T
-
V
-
L
L
D
LQE
T
S
L
A
G
V
A
N
Q
L
L
D
R
F
I
F
-
E
D
Q
I
R
P
Q
-----
D
R
--
E
E
L
L
R
A
L
L
L
K
H
S
H
A
G
E
L
E
A
L
G
G
V
K
PAVLTRSGDPSQPLLPQHSSLETQLFCEQGDGGTEGHSPSGILEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLVPVQRELLRRRYQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.57
7%
-18
- C1 -
3WZ3
-
?
A:
[42-71]
------------------------------------------------------------------------------------------------------------------------------------------
D
E
G
F
A
G
Y
V
N
A
L
Q
A
-
S
N
I
L
E
T
I
-----
K
K
--
E
K
M
N
L
T
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
38.37
11%
3
- C1 -
1J3M
1
?
A:
[3-30]
---------------------------------------------------------------------------------------------------------------------------
G
M
R
-
K
-
T
L
K
---
A
T
L
A
E
A
R
A
Q
V
E
A
A
L
K
E
-
E
G
F
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
37.31
26%
-2
- C1 -
1WN8
-
A:
[3-21]
---------------------------------------------------------------------------------------------------------------------------------------
K
S
S
E
T
T
L
T
M
F
L
K
E
M
Q
L
-
K
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.39
13%
-9
- C1 -
3GA8
1
MQSA_ECOLI
A:
[53-69]
---------------------------------------------------------------------------------------------------------------------------------------
D
A
F
M
A
Q
V
K
A
F
R
A
S
V
N
A
-
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
26.76
15%
111
- C1 -
4EEF
-
?
G:
[22-66]
---------------------------------------------------------------------------------------------------------------------------
P
W
K
-
F
-
S
E
N
---
I
A
F
E
I
A
L
S
F
T
N
K
D
T
P
D
-
R
------------------
W
K
K
V
A
Q
Y
V
K
G
R
T
P
E
E
V
K
K
H
Y
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------