@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0133: (2015-12-12 )
MFSFLEKNPFFFTLAFIFVFSIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMLDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVFGVPYDTENGVKLGNVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
Atome Classification :
(20 SA)
-------------------.........10........20...----.....30..--...--...40........50.......---.---60........70........80........90...---..-.--..100......-----------------------.-------------------------110----------.--.--.-----.....120-----......------------.----.--------------130--.-.....---------------------.----.---.140....-...150.......160...---....170.......180.......190....--...200...-....210-----........220-.......230
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------MF
S
F
LEKNP
F
F
F
T
L
A
F
I
F
V
F
S
I
A
G
----
L
V
E
I
L
P
N
F
F
--
K
SA--RPIEGLRP
Y
T
V
LETAG
R
Q
I
Y
IQ---E---
G
C
Y
H
C
H
S
Q
L
I
R
P
F
Q
A
E
V
D
RYG
A
Y
SLSGEYAYDRPF---LW-G--SKRIGP
D
L
H
RV-----------------------G-------------------------DY-----------R--T--T-----D
W
H
E
KHM------L
D
P
K
SV------------V----P--------------
H
----
S
-
I
M
P
A
Y
---------------------
K
----
H
---
L
F
I
KKSDF-
D
T
A
Y
A
E
A
L
T
QKKVFGVPYD---TENGVKLG
N
V
E
E
A
K
K
A
Y
L
E
E
A
K
K
I
T
A
D
M
K
D
K
--
R
V
L
E
A
I
ERG-
E
V
L
E
I
V
------
A
L
I
A
Y
L
N
S
LGN-SRINANQNAK
45
Fugue
88.29
47%
-58
- C2 -
3MK7
5
?
B:
[6-202]
----------------------
K
L
E
K
N
V
G
L
L
T
L
F
M
I
L
A
V
S
I
G
G
----
L
T
Q
I
V
P
L
F
F
QD
S
V
N
--
E
P
V
E
G
M
K
P
Y
T
A
L
Q
L
E
G
R
D
L
Y
I
R
---
E
---
G
C
V
G
C
H
S
Q
M
I
R
P
F
R
A
E
T
E
R
Y
G
H
Y
S
V
A
G
E
S
V
Y
D
H
P
F
---
L
W
-
G
--
S
K
R
T
G
P
D
L
A
R
V
-----------------------
G
-------------------------
G
R
-----------
Y
--
S
--
D
-----
D
W
H
R
A
H
L
------
Y
N
P
R
N
V
------------
V
----
P
--------------
E
----
S
-
K
M
P
S
Y
---------------------
P
----
W
---
L
V
E
N
T
L
D
--
G
K
D
T
A
K
K
M
S
A
L
R
M
L
G
V
P
Y
T
--------------------
E
E
D
I
A
G
A
R
D
S
V
N
G
K
--
T
------------
E
M
D
------
A
M
V
A
Y
L
Q
V
L
G
T
-
A
L
T
N
K
-----
21
HHSearch
86.32
46%
-69
- C2 -
3MK7
5
?
B:
[6-201]
----------------------
K
L
E
K
N
V
G
L
L
T
L
F
M
I
L
A
V
S
I
G
G
----
L
T
Q
I
V
P
L
F
F
--
Q
D
S
VN
E
P
V
E
G
M
K
P
Y
T
A
L
Q
L
E
G
R
D
L
Y
I
R
---
E
---
G
C
V
G
C
H
S
Q
M
I
R
P
F
R
A
E
T
E
R
Y
G
H
Y
S
V
A
G
E
S
V
Y
D
H
P
F
---
L
W
-
G
--
S
K
R
T
G
P
D
L
A
R
V
-----------------------
G
-------------------------
G
R
-----------
Y
--
S
--
D
-----
D
W
H
R
A
H
L
------
Y
N
P
R
N
V
------------
V
----
P
--------------
E
----
S
-
K
M
P
S
Y
---------------------
P
----
W
---
L
V
E
N
T
L
D
G
-
K
D
T
A
K
K
M
S
A
L
R
M
-
L
G
V
P
Y
T
---
E
-
E
D
I
A
G
-------------
A
R
D
S
----------------
V
N
-
G
K
T
E
M
D
------
A
M
V
A
Y
L
Q
V
L
G
T
-
A
L
T
N
K
-----
1
PsiBlast_PDB
77.46
50%
-66
- C2 -
3MK7
5
?
B:
[7-171]
-----------------------
L
E
K
N
V
G
L
L
T
L
F
M
I
L
A
V
S
I
G
G
----
L
T
Q
I
V
P
L
F
F
--
Q
D
S
VN
E
P
V
E
G
M
K
P
Y
T
A
L
Q
L
E
G
R
D
L
Y
I
R
---
E
---
G
C
V
G
C
H
S
Q
M
I
R
P
F
R
A
E
T
E
R
Y
G
H
Y
S
V
A
G
E
S
V
Y
D
H
P
F
---
L
W
-
G
--
S
K
R
T
G
P
D
L
A
R
V
-----------------------
G
-------------------------
G
R
-----------
Y
--
S
--
D
-----
D
W
H
R
A
H
L
------
Y
N
P
R
N
V
------------
V
----
P
--------------
E
----
S
-
K
M
P
S
Y
---------------------
P
----
W
---
L
V
E
N
T
L
D
G
K
D
T
--
A
K
K
M
S
A
L
R
M
L
G
V
P
Y
T
---
E
E
D
I
A
G
A
R
D
S
V
N
G
K
T
E
M
D
A
M
V
A
Y
L
Q
V
L
G
T
A
L
--
T
N
K
-----------------------------------------
51
Fugue
49.79
16%
-38
- C2 -
1GS5
3
ARGB_ECOLI
A:
[1-258]
MMN
P
L
I
I
K
L
G
G
VLLDS
E
E
A
L
E
R
L
F
S
A
L
V
N
Y
R
E
S
H
Q
R
P
L
V
I
V
H
G
G
G
C
V
V
D
E
L
M
K
G
L
N
--
L
P
V
--
K
K
K
N
G
L
R
V
T
P
A
D
Q
I
D
I
I
T
G
A
L
A
-------------
G
T
A
N
K
T
L
L
A
W
A
K
K
H
Q
I
-
A
A
V
G
L
F
L
G
D
G
D
S
---
V
K
-
V
--
T
Q
L
-
D
E
E
L
G
H
V
-----------------------
G
-------------------------
L
A
-----------
Q
--
P
--
G
-----
S
P
K
L
I
N
S
------
L
L
E
N
G
Y
------------
L
----
P
--------------
V
V
S
S
I
G
-
V
T
D
E
G
---------------------
Q
----
L
---
M
N
V
N
A
D
Q
A
-
A
T
A
L
A
A
T
L
G
A
D
L
I
L
L
S
D
V
S
GIL
D
G
K
G
Q
R
I
A
E
M
T
A
A
K
A
E
Q
L
I
E
Q
G
I
I
T
D
G
M
I
V
K
V
N
A
A
L
D
A
A
R
T
L
G
R
P
V
D
I
A
S
WRHAE
Q
L
P
A
L
F
N
G
M
P
M
G
T
R
I
L
A
-----
2
PsiBlast_PDB
49.47
24%
-8
- C2 -
4AEF
-
?
A:
[272-444]
---------------------------------------------------
I
V
D
Y
F
--
H
V
A
--
R
R
L
G
G
D
R
A
F
V
D
L
L
S
E
L
K
R
F
D
I
K
V
I
L
D
---
G
V
F
H
-
H
T
S
F
F
H
P
Y
F
Q
D
V
V
R
K
G
E
N
S
S
F
K
N
F
Y
R
I
I
K
F
---
P
V
-
V
--
S
K
E
F
L
Q
I
L
H
S
------------------------------------------------------------------
K
--
S
-----
S
W
E
E
K
Y
K
K
I
K
S
L
G
W
N
Y
E
S
F
------------
F
----
S
--------------
V
----
W
-
I
M
P
R
L
---------------------
N
----
H
---
D
N
P
K
V
R
E
F
-
I
K
N
V
I
L
F
W
T
N
K
G
V
D
G
F
R
M
D
---
V
A
H
G
V
P
P
E
V
W
K
E
V
R
E
A
L
P
K
E
K
Y
L
I
G
E
V
M
D
D
A
--
R
L
W
L
F
D
K
F
H
-
G
V
M
N
Y
R
------
L
Y
D
A
I
L
R
F
F
G
Y
-
E
E
I
T
A
E
E
F
L
N
46
Fugue
48.50
19%
-31
- C2 -
2C1D
1
?
B:
[1-137]
------------------------------------------------
C
E
T
A
P
K
E
V
--
V
Y
V
EG
A
V
E
A
S
L
T
G
A
P
G
N
P
E
E
G
V
R
I
M
T
T
---
N
ALG
N
C
V
A
C
H
Q
--
I
G
A
L
P
D
V
E
------------------------
F
--
P
G
T
I
A
P
P
L
D
G
A
-----------------------
G
-------------------------
D
R
-----------
W
--
T
--
E
-----
A
Q
L
R
G
I
V
------
A
N
A
K
M
T
------------
F
----
E
--------------
G
----
T
-
F
M
P
A
F
YKVDGFVRPGDGFSGKAGAEP
L
----
A
---
P
I
L
N
A
Q
Q
I
-
E
D
V
V
A
F
L
V
T
L
K
E
---------------------------------------------------------------------------------------
44
HHSearch
47.97
23%
-25
- C2 -
1W2L
3
?
A:
[4-98]
-------------------------------------------------------------------------
P
L
A
E
L
G
A
R
L
Y
R
E
---
K
---
A
C
F
S
C
H
S
I
D
G
----------------------------------
S
R
L
V
G
P
S
F
K
G
L
-----------------------
Y
-------------------------
G
S
T
R
T
F
EDG
T
T
A
V
A
--
D
--
E
-----
N
Y
L
R
E
S
I
------
L
Q
P
G
A
K
------------
V
----
V
QGY-----------
P
----
N
-
V
M
P
A
S
Y--------------------
A
----
S
---
L
S
E
R
--
E
V
-
A
A
L
I
E
F
I
K
Q
Q
Q
----------------------------------------------------------------------------------------
47
Fugue
46.21
17%
-20
- C2 -
3O0R
4
NORC_PSEAE
C:
[5-146]
-----------------------
F
T
K
G
M
A
R
N
I
Y
F
G
G
S
V
F
F
I
L
L
----
F
L
A
L
T
Y
H
T
E
--
K
T
L
--
P
E
R
T
N
E
A
A
M
S
A
A
V
V
R
G
K
L
V
W
E
Q
---
N
---
N
C
V
G
C
H
-----------------
T
L
L
G
E
----------------
G
A
Y
F
A
P
E
L
G
N
V
-----------------------
V
-------------------------
G
R
RGGEE------
G
--
F
--
N
-----
T
F
L
Q
A
W
M
------
K
I
Q
P
L
N
------------
V
----
P
--------------
G
----
R
-
R
A
M
P
Q
---------------------
F
----
H
---
L
S
E
G
Q
V
D
D
-
L
A
E
F
L
K
W
S
S
K
I
D
T
N
Q
W
P
P
N
---
K
E
G
--------------------------------------------------------------------------
39
HHSearch
45.09
24%
-28
- C2 -
2YEV
2
?
B:
[232-326]
-----------------------------------------------------------------------
A
P
V
A
D
E
R
G
Q
Q
V
F
Q
----
Q
---
N
C
A
A
C
H
G
V
A
R
S
M
P
-------------------------------
P
A
V
I
G
P
E
L
G
L
W
-----------------------
G
-------------------------
N
R
TSLGAGIVE--
N
--
T
--
P
-----
E
N
L
K
A
W
I
------
R
D
P
A
G
M
------------
K
----
P
--------------
G
----
V
-
K
M
P
G
F
---------------------
P
----
Q
---
L
S
E
E
--
D
L
-
D
A
L
V
R
Y
L
E
G
L
K
V
E
G
F
D
F
G
A
---
L
P
K
F
-------------------------------------------------------------------------
22
HHSearch
44.71
22%
-24
- C2 -
3WFD
4
NORC_PSEAE
C:
[41-134]
-------------------------------------------------------------------
N
E
A
A
M
S
A
A
V
V
R
G
K
L
V
W
E
Q
---
N
---
N
C
V
G
C
H
T
L
L
-----
G
E
G
----------------------------
A
Y
F
A
P
E
L
G
N
V
-----------------------
V
-------------------------
G
R
-----------
R
--
G
--
G
EEGFN
T
F
L
Q
A
W
M
------
K
I
Q
P
L
N
------------
V
----
P
--------------
G
----
R
R
A
M
P
Q
F
---------------------
H
--------
L
S
E
G
--
Q
V
-
D
D
L
A
E
F
L
K
W
S
S
K
I
D
T
N
Q
W
P
---
P
N
K
E
G
------------------------------------------------------------------------
43
HHSearch
44.64
18%
-32
- C2 -
3OA8
1
?
B:
[115-204]
----------------------------------------------------------------------------
D
P
P
G
T
V
S
G
----
G
---
N
C
Y
A
C
H
Q
L
D
P
--
K
E
V
--------------------------
S
--
Y
G
T
L
G
P
S
L
V
G
Y
-----------------------
G
-------------------------
R
E
-----------
R
--
N
FS
A
E
D
A
--
K
I
A
F
A
K
V
------
Y
D
A
Q
A
S
------------
L
----
A
--------------
C
----
S
-
S
M
P
R
F
---------------------
G
----
V
NGV
L
T
E
Q
--
Q
I
-
K
D
V
V
A
Y
L
F
D
P
E
S
P
V
N
K
-----------------------------------------------------------------------------------
36
HHSearch
44.39
19%
-23
- C2 -
3M97
5
CY552_PARDE
X:
[40-139]
-----------------------------------------------------------------------
A
S
A
D
P
A
A
G
E
K
V
F
-----
G
---
K
C
K
A
C
H
K
L
D
G
N
D
G
V
-------
G
P
H
L
N
G
V
V
--
G
R
T
V
---
A
G
V
D
--
G
F
N
Y
S
D
P
M
K
A
H
-----------------------
G
-------------------------
G
D
-----------
W
--
T
--
P
-----
E
A
L
Q
E
F
L
------
T
N
P
K
A
V
------------
V
----
K
--------------
G
----
T
-
K
M
A
F
A
---------------------
G
----
L
---
P
K
I
E
--
D
R
-
A
N
L
I
A
Y
L
E
G
Q
Q
----------------------------------------------------------------------------------------
37
HHSearch
44.27
21%
-12
- C2 -
3CP5
2
?
A:
[29-122]
----------------------------------------------------------------------
I
D
A
A
L
A
Q
Q
G
E
Q
L
F
N
----
T
---
Y
C
T
A
C
H
R
L
D
-----
E
------------------------------
R
F
I
G
P
A
L
R
D
V
-----------------------
T
-------------------------
K
R
-----------
R
--
G
--
P
-----
V
Y
I
M
N
V
M
------
L
N
P
N
G
M
I
Q
RH
P
V
M
K
Q
L
V
Q
E
----
Y
--------------
G
----
T
-
M
M
T
D
M
--------------------------
A
---
L
S
E
E
--
Q
A
-
R
A
I
L
E
Y
L
R
Q
V
A
E
N
Q
-------------------------------------------------------------------------------------
35
HHSearch
44.01
18%
-33
- C2 -
1HRO
1
CYC2_RHOGL
A:
[4-105]
-----------------------------------------------------------------------
P
P
G
D
P
V
E
G
K
H
L
F
H
----
T
---
I
C
I
T
C
H
T
D
I
K
--
G
A
N
---
K
V
-
G
P
S
L
Y
G
V
V
G
R
H
S
G
I
---
E
P
-
G
---
Y
N
Y
S
E
A
N
I
K
S
-----------------------
G
-------------------------
I
V
-----------
W
--
T
--
P
-----
D
V
L
F
K
Y
I
------
E
H
P
Q
K
I
------------
V
----
P
--------------
G
----
T
-
K
M
G
Y
P
---------------------
G
----
Q
---
P
D
P
Q
--
K
R
-
A
D
I
I
A
Y
L
E
T
L
K
----------------------------------------------------------------------------------------
25
HHSearch
43.28
20%
-40
- C2 -
1QN2
1
?
A:
[3-99]
--------------------------------------------------------------------------
D
A
A
A
G
E
K
A
F
-----
A
---
P
C
K
A
C
H
N
F
E
K
N
G
V
G
--------
P
T
L
K
G
V
V
--
G
A
K
A
GEG
A
D
-
G
--
Y
-
A
F
S
D
A
L
K
K
S
-----------------------
G
-------------------------
L
T
-----------
W
--
D
--
Q
-----
A
D
L
K
Q
W
L
------
A
D
P
K
K
K
------------
V
----
P
--------------
G
----
T
-
K
M
V
-
F
---------------------
P
----
G
---
I
S
D
-
P
K
K
V
-
D
D
I
I
A
Y
L
K
T
K
-----------------------------------------------------------------------------------------
33
HHSearch
41.03
18%
-6
- C2 -
1JDL
1
CYC22_RHOCE
A:
[3-119]
-------------------------------------------------------------------------
G
D
P
A
K
G
E
A
V
F
K
--------
K
C
M
A
C
H
R
V
G
P
D
A
--------------------------------
K
N
L
V
G
P
A
L
T
G
V
IDRQAGTAPG
F
N
Y
S
A
I
N
H
A
A
G
E
A
G
-------------------------
L
H
-----------
W
--
T
--
P
-----
E
N
I
I
A
Y
L
------
P
D
P
N
A
F
------------
L
----
R
K
F
L
A
D
A
GHAEQAKG
S
----
T
-
K
M
V
F
K
--------------------------
L
---
P
D
E
Q
--
E
R
-
K
D
V
V
A
Y
L
K
Q
F
S
P
---------------------------------------------------------------------------------------
29
HHSearch
40.68
15%
5
- C2 -
2BH4
1
CY550_PARVE
X:
[3-120]
-------------------------------------------------------------------------
G
D
A
A
K
G
E
K
E
F
N
--------
K
C
K
A
C
H
M
V
Q
A
P
D
G
T
D
-------------------
I
----
V
-
K
--
G
G
K
T
G
P
N
L
Y
G
V
-----------------------
V
GRKIASVEGFKYGDGILEVAEKNPD
M
V
-----------
W
--
S
--
E
-----
A
D
L
I
E
Y
V
------
T
D
P
K
P
W
------------
L
----
V
EKTGDSAA------
K
----
T
-
K
K
T
-
F
---------------------
K
-----------
L
G
K
N
Q
-
A
D
V
V
A
F
L
A
Q
H
S
P
D
A
G
------------------------------------------------------------------------------------
27
HHSearch
39.50
17%
-10
* C2 *
3C2C
1
CYC2_RHORU
A:
[3-111]
--------------------------------------------------------------------------
D
A
A
A
G
E
K
V
S
-----
K
---
K
C
L
A
C
H
T
F
D
Q
G
G
A
N
----
K
-
V
G
P
N
L
F
G
V
F
E
N
T
A
A
H
---
K
D
-
N
YA
Y
S
E
S
Y
T
E
M
K
A
K
-----------------------
G
-------------------------
L
T
-----------
W
--
T
--
E
-----
A
N
L
A
A
Y
V
------
K
N
P
K
A
F
------------
V
----
L
E
K
S
GDPKA------
K
----
S
-
K
M
T
-
F
---------------------
K
----
L
---
T
K
D
D
--
E
I
-
E
N
V
I
A
Y
L
K
T
L
K
----------------------------------------------------------------------------------------
42
HHSearch
39.32
21%
-16
- C2 -
2ZXY
1
?
A:
[1-86]
----------------------------------------------------------------------------
A
D
G
K
A
I
F
Q
Q
---
K
---
G
C
G
S
C
H
Q
A
N
-----
V
------------------------------
D
T
V
G
P
S
L
K
K
I
-----------------------
A
-------------------------
Q
A
-----------
Y
AG
K
--
E
-----
D
Q
L
I
K
F
L
------
K
G
E
A
P
A
------------
I
VDPA
K
--------------
E
----
A
-
I
M
K
P
Q
---------------------
L
T
M
L
K
G
---
L
S
D
A
--
E
L
-
K
A
L
A
D
F
I
L
S
H
-----------------------------------------------------------------------------------------
40
HHSearch
38.62
16%
-16
- C2 -
1CO6
1
CYC2_BLAVI
A:
[3-101]
---------------------------------------------------------------------------
A
A
S
G
E
Q
V
F
-----
K
---
Q
C
L
V
C
H
S
I
G
P
G
A
K
N
K
-----
V
G
P
V
L
N
G
L
F
-
G
R
H
S
G
---
T
I
-
E
--
G
F
A
Y
S
D
A
N
K
N
S
-----------------------
G
-------------------------
I
T
-----------
W
--
T
--
E
-----
E
V
F
R
E
Y
I
------
R
D
P
K
A
K
------------
I
----
P
--------------
G
----
T
-
K
M
I
F
A
---------------------
G
----
V
---
K
D
E
Q
--
K
V
-
S
D
L
I
A
Y
I
K
Q
F
N
A
D
G
S
K
K
----------------------------------------------------------------------------------