@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0850: (2016-03-19 )
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-........10........---20..------...--.----..30-...-......40.......-----------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L-DN
N
Q
K
D
L
N
Q
V
I
R
Q
L
K
EK
G
---
I
V
V
E------KT
K
--
S
----
R
K
D
--
I
W
K
-
S
V
S
SKAMPN
M
T
L
R
LQ-----------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.99
39%
-58
- C1 -
4ZWM
1
?
A:
[379-406]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
D
S
D
A
I
D
P
N
D
V
V
M
K
L
K
E
N
G
---
I
L
S
K
------
P
T
R
--
G
----
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
74.04
39%
-30
- C1 -
4NOG
-
?
A:
[364-391]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
D
S
D
A
I
D
P
N
D
V
V
M
K
L
K
E
N
G
---
I
L
S
K
------
P
T
R
--
G
----
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
73.62
39%
-51
- C1 -
4ZLV
1
?
A:
[379-406]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
D
S
D
A
I
D
P
N
D
V
V
M
K
L
K
E
N
G
---
I
L
S
K
------
P
T
R
--
G
----
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
69.37
25%
-40
- C1 -
4NY2
4
?
A:
[5-408]
--------------------------------------------------------------------PK
G
T
I
Y
L
T
F
D
DGPV
N
A
S
V
E
V
I
K
V
L
N
Q
G
G
V
K
A
T
F
YFNAWHLDGIGDENEDR
A
L
E
A
L
K
L
A
L
D
S
G
H
I
V
G
N
HSYDHMIHNCVEEFGPT
S
G
A
D
C
N
A
T
GNHQIHSYQD
P
V
R
D
A
A
S
F
E
Q
N
L
I
T
L
E
K
Y
L
PTIRSYPNYKGYE
L
A
R
L
P
YTNGWRVTKH
F
Q
A
D
GLCATSDNLKPWEPG
Y
V
C
D
PANPS
N
S
V
K
A
S
I
Q
V
Q
N
I
L
A
N
Q
G
Y
Q
T
H
G
W
DVDWAPENWGIPMPANSLTE
A
V
P
F
L
A
Y
V
D
K
A
LNSCSPTTIEPINSKTQEFPCGTPLHAD
K
V
I
V
L
T
H
DFLFEDGKRGMG
A
-
T
Q
N
L
P
K
L
A
E
F
I
R
I
A
K
E
A
G
---
Y
V
F
D
------
T
M
D
--
N
----
Y
T
P
--
R
W
--
S
V
G
K
T
Y
Q
A
G
E
Y
V
L
Y
Q
G
V
V
Y
K
A
V
I
S
H
T
A
Q
QDWAPSSTSSLWTNADPATNWTLNVSYEQG
D
I
V
N
Y
KG
K
R
Y
L
V
S
V
P
H
V
S
Q
QDWTPDTQNTL
F
T
A
L
E
L----------------------------------------------------
33
Fugue
68.42
16%
-20
- C1 -
3A32
6
SYT1_AERPE
A:
[7-471]
KT
H
I
D
Y
A
Y
E
L
DITVKPDSRVPVFNRE
F
A
T
F
T
GAG
V
P
L
F
S
L
G
G
G
P
I
R
Y
A
L
A
E
V
L
A
K
F
H
A
R
R
G
Y
Y
V
V
E
T
P
IIAST
E
L
F
K
V
S
GHIEFYRNN
M
Y
L
F
D
I
EG
H
E
F
A
VKPMN
C
P
Y
H
I
L
L
F
L
N
E
V
A
K
HRSKLPLP
F
K
V
F
E
F
G
R
V
H
R
Y
E
P
SGSIYGLLRVR
G
F
T
Q
D
D
A
H
I
I
V
P
GGR
V
I
D
V
V
Y
D
V
F
E
E
M
K
L
V
L
E
RLFKLGVSSET
F
K
V
R
L
S
M
S
DKSLIGKEFMGS
K
E
E
W
E
G
A
E
E
A
L
R
E
A
A
S
R
I
N
E
K
YG
I
D
I
V
E
L
E
GEAAFY
G
P
K
L
D
F
I
M
M
V
E
E
SG
V
S
K
E
W
Q
M
G
T
I
Q
F
D
F
N
L
P
R
R
F
R
L
Y
D
V
V
R
E
E
FGIE
E
V
Y
I
I
H
R
A
LLGS
I
E
R
F
L
G
V
Y
L
E
H
R
R
GRMPFTLAPIQ
F
A
V
I
A
VKTGGEV
D
-
R
E
I
E
D
L
A
S
S
I
A
K
G
L
L
D
K
G
---
F
R
V
A
------
V
K
G
--
S
S
KTG
L
S
S
--
D
V
R
-
H
I
E
S
T
A
K
P
A
V
N
V
F
I
G
A
K
E
V
R
E
KVLD
V
R
V
F
D
LESM
K
R
R
R
L
A
I
A
Y
GD
A
A
D
A
V
E
N
L
A
A
V
A
E
E
L
E
S
P
V
R
S
L
SGQA
P
R
I
P
A
DFSFML----------------------------------------------------------------
27
Fugue
65.22
12%
-4
- C1 -
4NB5
1
MMPR5_MYCTU
A:
[15-159]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
I
M
E
F
V
E
Q
M
G
G
Y
F
E
S
R
SLT
R
L
A
G
R
L
L
G
W
L
L
VCDPERQS
S
E
E
L
A
T
A
L
-
A
A
S
S
G
G
I
S
T
N
A
R
M
L
I
Q
F
G
---
F
I
E
R
------
L
A
V
A
G
D
----
R
R
T
--
Y
F
R
-
L
R
P
N
A
F
A
A
G
E
R
E
R
I
R
A
M
A
E
L
Q
D
L
A
D
V
G
L
R
A
L
G
DAPPQRS
R
R
L
R
E
M
R
D
L
L
A
Y
M
E
N
V
V
S
D
A
L
G
R
Y
S
Q---------------------------------------------------------------------------------
25
Fugue
62.06
22%
-11
- C1 -
3LYH
-
?
A:
[4-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
H
Q
I
I
L
L
A
HGSSD
A
R
W
C
E
T
F
E
K
L
A
E
P
T
V
E
S
I
EN
A
A
I
A
Y
M
E
L
A
E
P
S
L
D
T
I
V
N
R
A
K
G
Q
G
VE
Q
F
T
V
V
P
LFLAA
G
R
H
--
L
----
R
K
D
--
V
P
A
M
I
E
R
L
E
A
E
H
G
V
T
I
R
L
A
E
PIGKN
P
R
L
G
L
A
I
R
D
V
V
K
E
E
L
E
R
S-----------------------------------------------------------------------------------------------------------
22
HHSearch
58.97
32%
-66
- C1 -
1UD2
-
?
A:
[80-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
Q
L
E
R
A
I
G
S
L
K
S
N
D
---
I
N
V
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
57.91
25%
-61
- C1 -
1MXG
4
?
A:
[86-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
L
V
R
L
I
Q
T
A
H
A
Y
G
---
I
K
V
I
------
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
56.99
30%
-7
- C1 -
2Y9J
-
PRGK_SALTY
Y:
[28-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
E
Q
A
N
E
V
I
A
V
L
Q
M
H
N
---
I
E
A
N
------
K
I
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
56.93
18%
-23
- C1 -
2PQC
1
AROA_AGRSC
A:
[350-377]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
R
L
S
A
V
A
N
G
L
K
L
N
G
---
V
D
C
D
------
E
G
E
--
T
----
S
L
V
--
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
55.39
18%
9
- C1 -
2PJU
-
PRPR_ECOLI
A:
[137-175]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
E
D
A
R
G
Q
I
N
E
L
K
A
N
G
---
T
E
A
V
------
V
G
A
--
G
----
L
----
I
T
D
-
L
A
E
E
A
G
M
T
G
I
F
---------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
53.89
21%
-57
- C1 -
3DHU
-
?
A:
[82-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
D
F
K
A
L
T
D
R
A
H
E
L
G
---
M
K
V
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
52.84
24%
-29
- C1 -
1TWU
-
YYCE_BACSU
A:
[87-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
E
L
A
A
I
T
S
K
L
K
H
M
G
---
Y
Q
E
V
------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
52.26
12%
-14
- C1 -
4HVZ
-
BP26_BRUA1
A:
[37-250]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
A
R
I
A
V
T
G
E
G
M
M
T
A
S
P
D
M
A
I
L
N
L
S
V
L
R
Q
A
KT
A
R
E
A
M
-
T
A
N
N
E
A
M
T
K
V
L
D
A
M
K
K
A
G
---
I
E
D
R
------
D
L
Q
--
T
----
G
G
I
--
D
I
Q
-
P
I
Y
V
Y
P
D
D
K
N
N
L
K
E
P
TIT
G
Y
S
V
S
T
S
L
T
V
R
V
R
ELAN
V
G
K
I
L
D
E
S
V
T
L
GVNQGGDLNLVNDNP
S
A
V
I
N
E
A
R
K
R
A
V
A
N
A
I
A
K
A
K
T
L
A
D
A
A
GVGLGRVVEISELSRPPMPMPIARGQF
R
T
M
L
A
A
APDNS
V
P
I
A
A
G
E
N
S
Y
N
V
S
V
N
V
V
F
E
IK
23
HHSearch
51.85
18%
-34
- C1 -
1M5W
-
PDXJ_ECOLI
A:
[111-132]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
R
D
K
M
R
D
A
C
K
R
L
A
D
A
G
---
I
Q
V
S
------
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
51.84
10%
-21
- C1 -
2Q5C
3
?
A:
[127-165]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
E
I
T
T
L
I
S
K
V
K
T
E
N
---
I
K
I
V
------
V
S
G
--
K
----
T
----
V
T
D
-
E
A
I
K
Q
G
L
Y
G
E
T
---------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
49.94
15%
-63
- C1 -
1FXO
2
?
A:
[2-293]
------------------------------------------------------------------------------------------------------------------------------------------------------------K
R
K
G
I
I
LAGGSGTRLHPATLAISKQLLPVYDKP
M
I
Y
Y
P
L
S
T
L
M
L
A
GIR
E
I
L
I
I
S
T
PQD
T
P
R
F
Q
Q
L
LGDGSNWG
L
D
L
Q
Y
A
V
QPSPDGLAQ
A
F
L
I
G
E
SFIGN
D
L
S
A
L
V
L
GD
N
L
Y
Y
G
H
D
F
H
E
L
L
G
S
A
S
Q
RQT
G
A
S
V
F
A
Y
H
V
LDPERYG
V
V
E
F
D
QGGKAI
S
L
E
E
KPLEPKSN
Y
A
V
T
G
L
Y
F
Y
D
QQ
V
V
D
I
A
R
D
LKP
S
-
P
R
G
E
L
E
I
T
D
V
N
R
A
Y
L
E
R
G
Q--
L
S
V
E
------
I
M
G
--
R
-------G
Y
A
W
L
-
D
T
G
T
H
D
S
L
L
E
A
G
Q
F
I
A
T
L
E
N
R
Q
GLKVAC
P
E
E
I
A
Y
R
Q
KWID
A
A
Q
L
E
K
L
A
A
P
L
AKN
G
Y
G
Q
Y
L
K
R
L
L
T
ETVY-----------------------------------------------------------------------------
19
HHSearch
47.49
18%
-22
- C1 -
3GK0
-
PDXJ_BURP1
A:
[139-160]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
F
D
A
V
R
A
A
C
K
Q
L
A
D
A
G
---
V
R
V
S
------
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
47.44
4%
-15
* C1 *
3CUO
-
YGAV_ECOLI
A:
[1-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
E
L
A
Q
L
Q
AS
A
E
Q
A
A
A
L
L
K
A
M
SH
P
K
R
L
L
I
L
C
M
L
SGSPGTS
A
G
E
L
T
R
I
T
-
G
L
S
A
S
A
T
S
Q
H
L
A
R
M
R
D
E
G
---
L
I
D
S
------
Q
R
D
--
A
----
Q
R
I
--
L
Y
S
-
I
K
N
E
A
V
N
A
I
I
A
T
L
K
N
V
YC--------------------------------------------------------------------------------------------------------------------------------