@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0238: (2015-11-29 )
MIATINKNDLIALGFSEGTSKRIIRQGKELLIARGFRVYQNKRIGTIPASIATELLGFDVQNSSLSRG
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------.........10..----...---------..---.20----......-----..30........40..-..-....50-.------...------.------....60.......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------
M
I
A
TINKN
D
L
I
A
L
----GFS---------EG---
T
S
K
----
R
I
I
R
Q
G
-----
K
E
L
L
I
AR
G
F
R
V
Y
QNKR-IG-TI
P
A
S
--
I
------
A
T
E
------
L
------
L
GFDVQNSSLSRG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
84.66
17%
-58
- C2 -
2AXT
117
PSBU_THEEB
U:
[7-104]
----------------------------------------------------------------------------------------------------------------------------------EELVNVVDEKLGTAYG
E
K
I
D
L
N
N
T
N
I
A
A
F
IQYR
G
L
Y
---------
P
T
---
L
A
K
----
L
I
V
K
N
A
PYESV
E
D
V
L
N
I
P
G
L
T
E
R
Q
K
Q
I
-
L
R
-
E
N
L
E
H
--
F
TVTEVE
T
A
L
------
V
------
E
G
G
D
R
Y
N
N
G
L
Y
K
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
79.94
23%
-68
- C4 -
2GRG
-
YN034_YEAST
A:
[1-98]
---------------------------------------------------------------------------------------------------------------------------------MKSSIP
I
T
E
V
L
P
R
AV
G
S
L
T
F
D
E
N
Y
N
L
L
D
T
S
----
G
V
A
---------
K
V
---
I
E
K
SP
I
A
E
I
I
R
K
S
-----
N
A
E
L
G
R
L
G
Y
S
V
Y
E
D
A
Q
Y
I
G
-
H
A
F
K
K
--
A
------
G
H
F
------
I
------
V
Y
F
T
P
K
N
K
N
R
E
G
V
V
P
P
VGITN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
79.64
18%
-70
* C4 *
1F60
-
EF1A_YEAST
A:
[2-441]
G
K
E
K
S
H
I
N
V
V
V
I
G
H
VDSG
K
S
T
T
T
G
H
L
I
Y
K
C
G
GID
K
R
T
I
E
K
F
E
K
E
A
AELGK
G
S
F
K
Y
A
W
V
L
D
K
L
K
A
E
R
E
R
GITIDIAL
W
K
F
E
T
PKYQ
V
T
V
I
DAPGHRD
F
I
K
N
M
I
TGTSQAD
C
A
I
L
I
I
A
GG
V
G
E
F
E
A
G
I
SKDG
Q
T
R
E
H
A
L
L
A
F
T
L
GVR
Q
L
I
V
A
V
N
K
--
M
D
S
V
----
K
W
D
---------
E
S
---
R
F
Q
----
E
I
V
K
E
T
-----
S
N
F
I
K
K
V
G
---
Y
N
P
K
T
-
V
P
-
F
V
P
I
S
--
G
---------------
W
------
N
G
D
N
M
I
E
A
T
T
N
A
P
WYK
G
W
E
K
E
T
KA
G
V
V
K
G
K
T
L
L
E
A
I
D
A
I
E
Q
P
S
R
PTDK
P
L
R
L
P
L
Q
D
V
Y
K
I
G
GI
G
T
V
P
V
G
R
VE
T
G
V
I
K
P
G
M
V
V
T
F
A
PAG
V
T
T
E
V
K
S
V
E
M
HHEQLEQGVPGDN
V
G
F
N
V
K
NVSVKEIRRG
N
V
C
G
D
AKND
P
P
K
G
C
A
S
F
N
A
T
V
I
V
L
NHP
G
Q
I
S
AGYS
P
V
L
D
C
HT
A
H
I
A
C
R
FDELLEKNDRRSGKKLEDHPKFLKSG
D
A
A
L
V
K
F
V
P
S
K
P
M
C
V
E
A
FSEYPPLG
R
F
A
V
R
D
MRQTV
A
V
G
V
I
KSVDK
34
Fugue
75.65
20%
-59
- C4 -
1KP6
1
KP6T_UMV6
A:
[1-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
A
F
C
A
G
F
----
G
L
S
CK
W
E
C
W
C
T
A
H
G
---
T
G
N
----
E
L
R
Y
A
T
-----
A
A
G
C
G
D
H
L
S
K
S
Y
Y
D
A
R
-
A
G
-
H
C
L
F
S
DD
L
------
R
N
Q
------
F
Y
S
H
C
S
S
L
N
N
N
M
S
C
R
S
L
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
66.49
36%
-45
* C6 *
4MN8
3
FLS2_ARATH
A:
[488-523]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---------
N
G
---
F
T
G
----
R
I
P
R
E
M
-----
S
N
L
T
L
L
Q
G
L
R
M
Y
S
N
D
L
-
E
G
-
P
I
P
E
E
--
M
------
F
D
M
------
K
------
L
L
S
V
L
D
L
S
N
N
K
F
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
66.18
16%
-10
- C1 -
2KL7
-
FBLN4_HUMAN
A:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------
S
D
V
N
E
C
L
T
I
P
-----
E
A
C
---------
K
G
---
E
M
K
----
C
I
N
H
Y
G
-----
G
Y
L
C
L
P
R
S
A
A
V
I
N
D
L
H
-
G
E
-
G
P
P
P
P
--
V
------
P
P
A
QHPNPC
P
------
P
G
Y
E
P
D
D
Q
D
S
C
V
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
64.66
36%
-31
- C6 -
4MNA
1
FLS2_ARATH
A:
[368-403]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---------
N
G
---
F
T
G
----
R
I
P
R
E
M
-----
S
N
L
T
L
L
Q
G
L
R
M
Y
S
N
D
L
-
E
G
-
P
I
P
E
E
--
M
------
F
D
M
------
K
------
L
L
S
V
L
D
L
S
N
N
K
F
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
60.49
14%
-58
- C3 -
1NTH
-
MTMB1_METBA
A:
[54-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
---------
K
D
---
M
M
E
----
K
L
F
K
A
G
-----
F
E
M
L
L
E
C
G
I
Y
C
T
D
T
H
R
-
I
V
-
K
Y
T
E
D
--
E
------
I
W
D
------
A
------
I
N
N
V
Q
K
E
F
V
L
G
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
55.93
57%
-67
- C3 -
3I5S
1
P85A_HUMAN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
R
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
55.74
16%
-71
- C3 -
1WGN
-
A:
[24-54]
---------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
V
V
N
M
----
G
Y
S
---------
Y
E
---
C
V
L
----
R
A
M
K
K
K
-----
G
E
-
N
I
E
Q
I
L
D
Y
L
F
A
H
S
-
G
P
-
S
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
55.12
52%
-77
* C5 *
1PNJ
-
P85A_BOVIN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
K
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
K
------
I
------
S
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.43
57%
-31
- C3 -
3I5R
-
P85A_HUMAN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
R
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
K
------
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
53.28
57%
-67
- C3 -
3I5S
1
P85A_HUMAN
B:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
R
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
52.14
18%
-31
- C3 -
2Y9U
1
A:
[35-62]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
H
Y
S
M
D
D
L
A
S
L
----
K
I
P
---------
E
Q
---
F
R
H
----
A
I
W
K
G
I
-----
L
D
H
R
Q
L
H
E
F
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
50.98
26%
-44
- C3 -
1CUK
-
RUVA_ECOLI
A:
[167-185]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
A
L
----
G
Y
K
---------
P
Q
---
E
A
S
----
R
M
V
S
K
I
-----
A
R
P
D
A
S
S
E
T
L
I
R
E
A
L
R
-
A
A
-
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
50.85
8%
-27
- C4 -
2LIU
-
?
A:
[1936-2034]
-----------------------------------------------------------------------------------------------------------------------------SGLVPRGS
H
M
T
P
QVNQVN
L
S
E
I
K
Q
V
L
K
Q
Q
L
A
E
A
L
----
Y
T
E
---------
E
S
EIA
E
D
Q
----
K
F
V
D
L
G
-----
L
D
S
I
V
G
V
E
W
T
T
T
I
N
Q
T
-
Y
N
L
N
L
K
A
T
--
K
------
L
Y
D
------
Y
------
P
T
L
L
E
L
S
G
Y
I
A
Q
I
L
S
S
Q
G
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
50.62
52%
-84
- C5 -
2PNI
-
P85A_BOVIN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
K
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
K
------
I
------
S
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.62
57%
-69
- C3 -
1PHT
-
P85A_HUMAN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
R
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
K
K
------
I
------
S
P
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.82
57%
-28
- C3 -
1PKT
-
P85A_HUMAN
A:
[29-49]
---------------------------------------------------------------------------------------------------------------------------------------------------
I
L
T
V
N
K
G
S
L
V
A
L
----
G
F
S
---------
D
G
---
Q
E
A
----
R
P
E
E
I
G
-----
W
L
N
G
Y
N
E
T
T
G
E
R
G
D
F
P
-
G
T
-
Y
V
E
Y
I
--
G
------
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
48.09
16%
-28
- C3 -
2Y9T
-
P63_HUMAN
A:
[577-607]
----------------------------------------------------------------------------------------------------------------------------------------------------
E
H
Y
S
M
D
D
L
A
S
L
----
K
I
P
---------
E
Q
---
F
R
H
----
A
I
W
K
G
I
-----
L
D
H
R
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------