@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0010c: (2016-04-18 )
MQQTAWAPRTSGIAGCGAGGVVMAIASVTLVTDTPGRVLTGVAALGLILFASATWRARPRLAITPDGLAIRGWFRTQLLRHSNIKIIRIDEFRRYGRLVRLLEIETVSGGLLILSRWDLGTDPVEVLDALTAAGYAGRGQR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30...-.....-----40........50.--.....-..60........70.....----...80.....--------.-----..90-------.......--..100.......-------110...------...--.120.....-..130.......140-------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQTAWAPRTSGIAGCGAGG
V
V
M
A
I
A
S
V
T
L
V
TDT-P
G
R
V
L
-----
T
G
V
A
A
L
G
L
I
L
FAS--ATWRA-RP
R
L
A
ITPDG
L
A
I
R
G
W
F
R
T
----
Q
L
L
RHSN
I
K
I
--------
I
-----R
I
D
--------
E
F
R
R
Y
G
R
--
L
V
R
L
L
E
I
E
TVSG-------
G
L
L
I
L
S
------RWD--LGT
D
P
V
E
V
L
-
D
A
L
T
AAGYAGRGQR--------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
77.36
24%
-106
- C5 -
4U1F
-
EIF3B_YEAST
A:
[146-625]
P
S
S
S
L
K
SWLMDDKV
R
D
Q
F
V
L
Q
D
DV
K
T
S
V
F
W
NSMFNEEDSLV
E
S
R
E
NWST
N
Y
V
R
F
S
PKGT
Y
L
F
S
Y
H
QQ
G
V
T
A
W
G
G
PNFDRL
R
R
F
Y
H
P
DVR
N
S
S
V
S
PNEK
Y
L
V
T
F
S
TE
P
I
I
V
E
EDNEFSPFTKKNEGHQ
L
C
I
W
DIASGLLM
A
T
F
P
V
I
KSPYLKWPL
V
R
W
S
YNDK
Y
C
A
R
M
V
GD
S
L
I
V
H
DATKNF
M
P
L
E
A
K
A
L
K
P
S
G
I
-----
R
D
F
S
F
A
P
E
G
V
K
L
Q
P
F
R
-
N
G
D
E
P
-----
S
--
V
L
L
A
Y
W
T
P
E
T
--
N
N
S
A
C
-
T
A
T
I
A
E
V
P
R
G
---
R
V
L
K
T
V
----
N
L
V
Q
V
S
N
V
T
L
--------
H
-----
W
Q
N
-----------
Q
A
E
F
--
L
C
F
N
V
E
R
H
T
K
S
G
K
T
Q
F
S
N
L
Q
I
C
R
L
T
------
E
R
D
--
I
P
V
E
K
V
E
L
K
-
D
S
V
F
E
F
G
W
E
P
H
G
N
R
F
V
T
I
S
V
HEVADMNYAIPA
N
T
I
R
F
Y
A
P
E
T
KK
R
W
S
L
V
K
E
I
P
KTFAN
T
V
S
W
S
PAGR
F
V
V
V
G
A
L
VGPNMR
R
S
D
L
Q
F
Y
D
MDYPGEKNINDNNDVSASLKDVAHPTYSAAT
N
I
T
W
D
PSGR
Y
V
T
A
W
S
S
SLKHKVE
H
G
Y
K
I
F
N
IAGNLV
K
E
D
I
I
A
GFK
N
F
A
W
RPRP
23
Fugue
75.89
14%
-79
- C6 -
4PQL
9
?
A:
[1-131]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QNQYF
T
V
Q
E
N
Y
K
E
R
F
Y
Q
I
-------------
P
K
V
F
F
T
S
E
-
N
Y
K
N
L
-----
T
N
D
M
K
I
A
Y
A
I
L
R
D
--
R
L
N
L
S
-
I
K
N
S
W
V
D
E
D
G
N
I
Y
F
V
Y
S
N
E
----
K
L
M
E
I
L
N
C
K
K
--------
E
-----
K
L
T
--------
K
I
K
K
G
L
E
--
N
D
G
L
L
I
Q
K
--
R
R
-------
G
L
N
K
P
N
------
I
L
Y
--
L
M
K
P
I
V
T
E
R
-
D
I
Y
K
I
E
K
E
E
N
D
V
E
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
75.48
28%
-101
- C7 -
3IEF
-
TRMD_BARHE
A:
[51-150]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
D
T
-
P
A
G
G
G
-----
A
G
M
V
M
R
A
D
V
L
A
A
A
L
D
S
C
P
N
D
-
S
P
R
L
L
M
S
P
R
G
R
L
L
N
Q
A
Y
A
R
----
S
L
A
R
S
S
G
V
T
L
--------
V
C
G
R
FE
G
V
D
--------
E
-----
R
--
I
I
E
A
R
E
L
E
E
V
S
I
-------
G
D
Y
I
L
S
------
G
G
E
----
T
A
A
L
V
L
L
-
D
A
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
67.08
16%
-81
- C6 -
1G2A
2
DEF_ECOLI
A:
[1-164]
----------------------------------------------------------------------------------------------------------------------------------------------------S
V
L
Q
V
L
H
I
PDERLR
K
V
A
K
P
VEEVN
A
E
I
Q
R
I
V
D
D
M
F
E
T
M
Y
A
E
E
G
I
G
L
A
A
T
Q
V
D
-----
I
H
Q
R
I
I
V
I
D
V
-
S
-
E
-------
N
R
D
--
E
R
L
V
L
I
N
P
--
E
L
L
E
K
-
S
-
G
E
T
G
I
E
E
G
C
L
S
I
P
E
Q
R
A
----
L
V
P
R
A
E
K
V
K
I
--------
R
-----
A
L
D
RDG
K
P
F
E
L
E
A
D
G
L
L
A
--
I
C
I
Q
H
E
M
D
H
L
V
G
-------
K
L
F
M
D
Y
------
L
S
----
P
L
K
Q
Q
R
I
R
-
Q
K
V
E
K
L
D
R
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
63.19
26%
-88
- C7 -
3N2S
2
NFRA1_BACSU
A:
[119-195]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
N
M
S
I
A
A
E
S
M
G
L
G
I
C
Y
I
G
G
I
R
N
E
L
D
K
V
T
E
V
L
Q
T
-
P
D
H
V
L
--------
P
L
F
G
L
A
V
G
H
P
--
A
N
L
S
G
K
K
P
R
L
P
-------------
K
----
Q
A
V
Y
H
E
N
T
Y
N
--------
V
-----
N
T
D
--------
D
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
61.39
7%
-94
- C6 -
2QGZ
2
?
A:
[100-300]
------------------------------------------------------------------------------------------------------------------------------------------------------------------QKQA
A
I
S
E
R
I
Q
L
V
SLPKSY
R
H
I
H
L
S
D
I
D
V
N
N
A
S
R
M
E
A
F
S
A
I
L
D
F
V
E
Q
Y
P
S
A
E
Q
-
K
G
L
Y
L
Y
G
D
MG
I
G
K
S
Y
L
L
A
A
M
A
H
E
--
L
S
E
K
K
-
G
V
S
T
T
L
L
H
F
P
S
F
A
I
D
V
K
N
A
ISKE
E
I
D
A
V
K
N
V
P
V
--------
L
-----
I
L
D
--------
D
I
G
A
V
R
D
E
V
L
Q
V
I
L
Q
Y
R
M
L
E
E
-------
L
P
T
F
F
T
S
NYS
F
A
D
L
E
R
K
W
A
W
Q
A
K
R
V
M
-
E
R
V
R
Y
L
A
R
E
F
H
L
E
G
A
N
R
R----------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
57.14
11%
-74
- C3 -
1EN7
2
END7_BPT4
A:
[1-157]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLLT
G
K
L
Y
K
E
E
K
Q
K
F
Y
D
A
Q
N
G
K
C
L
I
C
Q
R
E
L
N
P
D
V
Q
A
N
H
L
D
H
D
H
-
E
L
N
G
P
-----
K
A
G
K
V
R
G
L
L
C
N
L
C
--
N
A
A
E
G
-
Q
M
K
H
K
F
N
R
S
G
L
K
G
Q
G
V
D
Y
L
----
E
W
L
E
N
L
L
T
Y
L
K
SDYTQ
N
N
I
-----
H
P
N
--------
F
V
G
D
K
S
K
--
E
F
S
R
L
G
K
E
E
M
M
A
-------
E
M
L
Q
R
G
------
F
E
Y
--
N
E
S
D
T
K
T
Q
L
-
I
A
S
F
K
K
Q
L
R
K
S
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.31
39%
-42
- C8 -
3B0X
1
?
A:
[326-366]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
--
L
P
K
L
L
E
L
P
Q
V
K
G
-------
D
L
Q
V
H
S
------
T
Y
S
--
D
G
Q
N
T
L
E
E
L
W
E
A
A
K
T
M
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.96
39%
-38
- C8 -
3AU2
2
?
A:
[326-366]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
--
L
P
K
L
L
E
L
P
Q
V
K
G
-------
D
L
Q
V
H
S
------
T
Y
S
--
D
G
Q
N
T
L
E
E
L
W
E
A
A
K
T
M
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
53.54
39%
-28
- C8 -
3B0Y
-
?
A:
[326-366]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
--
L
P
K
L
L
E
L
P
Q
V
K
G
-------
D
L
Q
V
H
S
------
T
Y
S
--
D
G
Q
N
T
L
E
E
L
W
E
A
A
K
T
M
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
52.20
39%
-23
- C8 -
3AUO
1
?
A:
[326-366]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
--
L
P
K
L
L
E
L
P
Q
V
K
G
-------
D
L
Q
V
H
S
------
T
Y
S
--
D
G
Q
N
T
L
E
E
L
W
E
A
A
K
T
M
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.96
39%
-43
- C8 -
3AU6
1
?
A:
[326-368]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
--
L
P
K
L
L
E
L
P
Q
V
K
G
-------
D
L
Q
V
H
S
------
T
Y
S
--
D
G
Q
N
T
L
E
E
L
W
E
A
A
K
T
M
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
51.56
10%
-63
- C6 -
2PFU
-
EXBD_ECOLI
A:
[43-141]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
V
K
V
N
L
P
A
S
T
S
T
P
Q
P
R
P
E
K
P
V
Y
L
S
V
K
A
-
D
N
S
M
F
-----
I
G
N
D
P
V
T
D
E
T
M
I
T
--
A
L
N
A
L
-
T
E
G
-----------------------
K
K
D
T
T
I
F
--------
F
-----
R
A
D
--------
K
T
V
D
Y
E
T
--
L
M
K
V
M
D
T
L
H
Q
A
G
-----------
Y
L
------
K
I
G
--
L
V
G
E
E
--------------
T
A
K
A
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
50.85
17%
-26
- C6 -
4DRB
-
FANCM_HUMAN
C:
[675-790]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKDWFLS
E
E
E
F
K
L
W
N
R
L
Y
R
L
R
D
S
D
E
I
K
E
I
T
L
P
Q
V
Q
F
S
S
L
Q
T
T
-
G
I
H
Q
L
-----
S
--------
L
S
E
W
--
R
L
W
Q
D
-
H
P
L
--------------
P
T
----
H
Q
V
D
H
S
--------------------
D
--------
R
C
R
H
F
I
G
--
L
M
Q
M
I
E
G
M
R
H
E
E
-------
G
----------------------
E
C
S
-
Y
E
L
E
V
E
S
Y
L
Q
M
E
D
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
48.28
43%
-67
- C7 -
3IFR
1
?
A:
[241-288]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
A
A
D
H
I
A
S
A
L
A
A
G
I
T
R
P
G
D
V
L
-----
L
K
F
G
G
A
G
D
I
I
V
A
S
--
A
T
A
K
S
-
D
P
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
44.74
32%
52
* C7 *
2FI0
-
?
A:
[58-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
--
A
G
T
P
M
D
K
I
V
-
R
T
L
E
A
N
G
Y
E
V
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
43.18
27%
15
- C7 -
1JG5
-
GFRP_RAT
A:
[46-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
Y
--
V
N
D
P
P
R
I
V
L
-
D
K
L
E
C
R
G
F
R
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
38.09
45%
-8
- C2 -
2VEC
1
YHAK_ECOLI
A:
[227-250]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
D
G
A
F
I
R
D
E
A
N
I
T
L
V
A
D
S
-
P
L
R
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.17
31%
73
- C7 -
1IXS
-
A:
[18-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
A
V
-
M
A
L
A
A
L
G
F
K
E
A
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.92
24%
86
* C8 *
1X1N
1
DPEP_SOLTU
A:
[368-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
--
L
G
V
I
T
E
D
V
V
-
Q
L
R
K
S
I
E
A
P
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------