@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0115: (2015-12-22 )
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCPYQEVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIPHIGMRRA
Atome Classification :
(20 SA)
.........10..-......20........30....---.-----.-----.----.-40..---------.-----.---.-.-----..-50..-..-.-.-..60........70------------------.-----------------------------........80........90----.....-...100..------...-..110.....---..120.......130--...-----------.-...-140----.....-...150
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MSL
D
W
TCKHHADL-
T
L
K
E
L
Y
A
L
L
Q
LR
T
E
V
F
V
V
EQKC---P-----Y-----Q----E-VDG
L
---------
D
-----L---V-G-----DT-
H
H
L
M
-
A
W-R-D-
G
Q
L
L
A
Y
L
R
L
LDPV-------------------R-----------------------------HE
G
Q
V
V
I
G
R
VVSSSAARGQ
G
----
L
G
H
Q
L
-
M
E
R
A
L
Q
A
A
------
E
R
L-WLDT
P
V
Y
L
S
A
---
Q
A
H
L
Q
A
Y
Y
GRY
G
F
V
A
--
V
T
E
-----------
V
-
Y
LE-DD-----IPHIG-MRRA
1
HHSearch
75.76
100%
-61
- C1 -
1XEB
-
?
A:
[2-150]
-
S
L
D
W
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C
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H
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A
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-
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Y
A
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Q
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C
---
P
-----
Y
-----
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----
E
-
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---------
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-----
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---
V
-
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-----
D
T
-
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-
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A
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L
R
L
L
D
P
V
-------------------
R
-----------------------------
H
E
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V
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S
S
A
A
R
G
Q
G
----
L
G
H
Q
L
-
M
E
R
A
L
Q
A
A
------
E
R
L
-
W
L
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T
P
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Y
L
S
A
---
Q
A
H
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Q
A
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G
R
Y
G
F
V
A
--
V
T
E
-----------
V
-
Y
L
E
-
D
D
-----
I
P
H
I
G
-
M
R
R
A
21
PsiBlast_PDB
75.32
98%
-61
- C1 -
1XEB
-
?
A:
[2-150]
-
S
L
D
W
T
C
K
H
H
A
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---
P
-----
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-----
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E
-
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---------
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-----
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---
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-----
D
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L
A
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L
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L
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P
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-------------------
R
-----------------------------
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E
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S
A
A
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----
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-
M
E
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A
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Q
A
A
------
E
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-
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---
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A
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A
--
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T
E
-----------
V
-
Y
L
E
-
D
D
-----
I
P
H
I
G
-
M
R
R
A
33
Fugue
72.57
88%
-72
- C1 -
1XEB
-
?
A:
[2-150]
-
S
L
D
W
T
C
K
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---
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-----
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----
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---------
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-----
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---
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------
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-------------------
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-----------------------------
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A
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----
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M
E
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A
A
E
------
R
L
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-
L
-
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---
Q
A
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A
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--
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-----------
V
-
Y
L
E
-
D
D
-----
I
P
H
I
G
M
R
R
A
-
2
HHSearch
63.88
25%
-106
- C1 -
3EFA
5
?
A:
[7-145]
---------
I
F
S
A
-
S
P
A
N
R
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R
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E
E
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I
---
S
-----
A
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---
E
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K
---------
D
-----
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-----
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-----
Q
C
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P
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A
-------------------
D
-------------------------------
H
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----
W
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A
A
E
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W
A
------
T
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H
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---
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Y
R
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--
T
A
G
-----------
P
-
Y
D
E
-
D
G
-----
A
P
V
V
I
-
M
H
K
Q
5
HHSearch
63.68
18%
-97
- C1 -
1CJW
1
SNAT_SHEEP
A:
[7-164]
--------
E
F
R
C
L
-
T
P
E
D
A
A
G
V
F
E
I
E
R
E
A
F
I
S
V
S
G
N
C--
P
-----
L
-----
N
L
D
--
E
-
V
Q
H
F
---------
L
-----
T
---
L
-
C
-----
P
E
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L
S
L
G
-
W
F
-
V
-
E
-
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R
L
V
A
F
I
I
G
S
L
W
D
-------------------
E
ERLTQESLA
L
H
R
P----------------
R
G
H
S
A
H
L
H
A
L
A
V
H
R
S
F
R
Q
Q
G
----
K
G
S
V
L
-
L
W
R
Y
L
H
H
V
------
G
A
Q
P
A
V
-
R
R
A
V
L
M
C
---
E
D
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F
Y
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R
F
G
F
H
P
--
A
G
P
-----------
C
A
I
V
V
-
G
S
-----
L
T
F
T
E
-
M
H
C
S
8
HHSearch
62.89
17%
-99
- C1 -
1KUX
1
SNAT_SHEEP
A:
[35-192]
-------
N
E
F
R
C
L
-
T
P
E
D
A
A
G
V
F
E
I
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G
N
CPL
N
-----
L
-----
D
----
E
-
V
Q
H
F
---------
L
-----
T
---
L
-
C
-----
P
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A
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S
L
W
D
-------------------
E
ERLT
Q
E
S
L
A
LHRP----------------
R
G
H
S
A
H
L
H
A
L
A
V
H
R
S
F
R
Q
Q
G
----
K
G
S
V
L
-
L
W
R
Y
L
H
H
V
------
G
A
Q
P
A
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-
R
R
A
V
L
M
C
---
E
D
A
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F
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Q
R
F
G
F
H
P
--
A
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P
-----------
C
A
I
V
V
-
G
S
-----
L
T
F
T
E
-
M
H
C
S
11
HHSearch
62.04
19%
-103
- C1 -
2JDC
2
?
A:
[4-144]
---------
V
K
P
I
-
N
A
E
D
T
Y
E
L
R
H
---
R
I
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N
Q
P
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---
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M
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---
L
-
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A
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Y
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Y
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G
-
G
K
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A
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F
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A
E
-------------------
H
SELQ-------------------------
G
Q
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Q
Y
Q
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R
G
M
A
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Y
R
E
Q
K
----
A
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I
K
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A
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E
I
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------
R
K
R
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W
C
N
A
---
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A
S
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L
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F
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Q
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E
-----------
V
-
F
D
T
P
P
V
-----
G
P
H
I
L
-
M
Y
K
R
3
HHSearch
59.82
23%
-104
- C1 -
1Q2Y
-
YJCF_BACSU
A:
[4-140]
---------
V
I
A
K
-
N
E
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K
D
A
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P
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A
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G
R
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---------------------------------------------------
G
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----
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K
A
A
------
A
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-
M
M
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22
PsiBlast_PDB
58.03
37%
-122
- C1 -
3OWC
4
ATSE2_PSEAE
A:
[73-151]
-------------------------------------------------------------------------------------------------
A
C
-
R
-
D
-
D
Q
V
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C
Q
L
L
F
D
--------------------
R
-----------------------------
R
N
G
V
V
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P
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A
R
G
Q
G
----
L
G
L
P
M
-
L
E
A
L
L
A
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A
F
ADADI
E
R
V
-
E
L
N
V
Y
D
W
N
A
A
---
A
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H
L
---
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R
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A
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E
G
L
-----------
R
-
R
S
A
-
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R
-----
V
G
R
E
R
-
W
N
V
V
4
HHSearch
57.95
14%
-112
- C1 -
1RO5
5
LASI_PSEAE
A:
[2-177]
S
H
M
I
V
Q
I
G
R
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E
E
F
-
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D-
E
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GPYMLKNTFPELLHGKEAP
C
-----------------------------
S
P
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GFSD
C
T
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------
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I
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SR
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A
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34
Fugue
57.81
23%
-99
- C1 -
1Q2Y
-
YJCF_BACSU
A:
[1-140]
------
M
K
A
V
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E
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K
---------------------------------------------------
D
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----
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A
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M
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19
HHSearch
57.07
13%
-92
- C1 -
1U6M
2
?
A:
[3-187]
--------
L
I
R
S
A
-
T
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TYRYG
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-------------------
D
EKIID
E
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E
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H
GLAEDVRLFIEEET
L
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G
M
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----
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-
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A
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A
------
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A
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N
V
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FD
N
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D
--
V
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-----------
M
-
T
I
--
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-----
H
L
Y
N
H
-
M
Q
K
E
16
HHSearch
56.64
19%
-111
- C1 -
1TIQ
4
PAIA_BACSU
A:
[6-153]
----------
K
K
C
-
S
R
E
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T
L
Q
Q
L
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I
E
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T
F
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---
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NS
P
E
N
M
-----
K
----
A
-
Y
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A
FN
T
E
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E
K
E
-----
L
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--
N
-
M
-----
S
S
-
Q
F
F
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-
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-
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E
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V
N
I
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D
-------------------
A
QSEEM------------------------
G
A
E
S
L
E
I
E
R
I
Y
I
K
N
S
F
Q
K
H
G
----
L
G
K
H
L
-
L
N
K
A
I
E
I
A
------
L
E
R
-
N
K
-
K
N
I
W
L
G
V
W
EK
N
E
N
A
I
A
F
Y
K
K
M
G
F
V
Q
--
T
G
A
-----------
H
-
S
F
Y
-
M
G
-----
D
E
E
Q
T
-
D
L
I
M
20
HHSearch
56.47
17%
-100
* C1 *
3MGD
1
?
A:
[3-144]
--------
N
Y
R
K
A
-
D
M
K
D
I
S
L
L
V
S
I
R
K
R
Q
L
I
D
E
G
I
E
---
P
-----
N
IDI--
D
K
E
L
T
R
-
Y
F
N
N
---------
K
-----
L
---
A
N
N
-----
L
L
-
V
E
W
I
-
A
E
-
E
-
N
-
N
Q
I
I
A
T
A
A
I
A
F
I
D
-------------------
F
P
PTYTNK----------------------
T
G
R
K
G
Y
I
T
N
M
Y
T
E
P
T
S
R
G
N
G
----
I
A
T
G
M
-
L
D
R
L
V
N
E
A
------
K
E
R
-
N
I
-
H
K
I
C
L
V
A
---
S
K
L
G
R
P
V
Y
K
K
Y
G
F
Q
D
--
T
D
E
-----------
W
-
L
E
L
-
N
L
-----
L
E
H
H
------
18
HHSearch
55.10
16%
-127
- C1 -
3FNC
8
?
A:
[4-145]
--
M
D
F
H
I
---
R
K
A
-
T
N
S
D
A
E
A
I
Q
H
V
A
T
T
S
W
H
H
T
Y
Q
D
LI-
P
S
D
---
V
Q
----
D
----
D
-
F
L
K
R
---------
F
YN
V
E
T
L
H
N
R
I
-
S
-----
A
T
-
P
F
A
V
-
L
E
-
Q
-
A
-
D
K
V
I
G
F
A
N
F
I
E
L
E
-------------------
K
-------------------------------
G
K
S
E
L
A
A
F
Y
L
L
P
E
V
T
Q
R
G
----
L
G
T
E
L
-
L
E
V
G
M
T
L
F
------
H
V
---
P
-
L
P
M
F
V
N
V
EKG
N
E
T
A
I
H
F
Y
K
A
K
G
F
V
Q
--
V
E
E
-----------
F
-
T
E
D
-
F
Y
-----
G
Y
P
L
E
-
T
I
R
F
9
HHSearch
55.02
12%
-108
- C1 -
1MK4
-
YQJY_BACSU
A:
[3-154]
---------
I
R
T
I
-
T
S
S
D
Y
E
M
V
T
S
V
L
N
E
W
W
G
G
R
Q
L
K
---
E
K
----
L
-----
P
----
R
-
L
F
F
E
---------
H
-----
F
-----
Q
------
D
-
T
S
F
I
-
T
S
-
E
-
H
-
N
S
M
T
G
F
L
I
G
F
Q
S
Q
-------------------
S
-----------------------------
D
P
E
T
A
Y
I
H
F
S
G
V
H
P
D
F
R
K
M
Q
----
I
G
K
Q
L
-
Y
D
V
F
I
E
T
V
------
K
Q
R
-
G
C
-
T
R
V
K
C
V
T
S
PV
N
K
V
S
I
A
Y
H
T
K
L
G
F
D
I
--
E
K
G
TKTVNG
I
S
V
F
A
N
-
Y
D
G
-
P
G
-----
Q
D
R
V
L
-
F
V
K
N
6
HHSearch
54.82
21%
-109
- C1 -
2DXQ
5
?
A:
[6-144]
-------
I
S
L
R
A
A
-
G
P
G
D
L
P
G
L
L
E
L
Y
Q
V
L
N
P
S
D
P
E
L
---
T
-----
T
-----
Q
EA
G
-
A
V
F
A
A
M
---------
L
-----
A
---
Q
-
P
-----
G
L
-
T
I
F
V
-
A
T
-
E
-
N
-
G
K
P
V
A
T
A
T
L
L
I
V
P
-------------------
N
LTRA-------------------------
A
R
P
Y
A
F
I
E
N
V
V
T
L
E
A
R
R
G
R
G
----
Y
G
R
T
V
-
V
R
H
A
I
E
T
A
------
F
G
A
-
N
C
-
Y
K
V
M
L
L
T
GRH
D
P
A
V
H
A
F
Y
E
S
C
G
F
V
Q
--
N
K
T
-----------
G
-
F
Q
I
-
R
Q
-----
D
---------
12
HHSearch
54.09
11%
-91
- C1 -
1S3Z
5
AAC6_SALEN
A:
[19-158]
-----
S
H
M
D
I
R
Q
M
-
N
K
T
H
L
E
H
W
R
G
L
R
K
Q
L
W
P
G
H
P
D
D
---
A
-----
H
-----
L
----
A
D
G
E
E
I
---------
L
-----
Q
---
A
-
D
-----
H
L
-
A
S
F
I
-
A
M
-
A
-
D
-
G
V
A
I
G
F
A
D
A
S
I
R
H
-------------------
D
YVNGCD-----------------------
S
S
P
V
V
F
L
E
G
I
F
V
L
P
S
F
R
Q
R
G
----
V
A
K
Q
L
-
I
A
A
V
Q
R
W
G
------
T
N
K
-
G
C
-
R
E
M
A
S
D
T
S
PE
N
T
I
S
Q
K
V
H
Q
A
L
G
F
E
E
--
T
E
R
-----------
V
-
I
F
Y
-
R
K
-----
R
C
--------
14
HHSearch
52.83
17%
-109
- C1 -
3GY9
7
?
A:
[6-134]
---------
I
E
R
V
-
N
D
F
D
G
Y
N
W
L
P
L
L
A
K
S
S
Q
E
G
F
Q
L
---
V
-----
E
-----
R
M
L
R
-
N
R
R
E
E
S
---------
F
-----
Q
---
E
-
D
-----
G
E
-
A
M
F
V
-
A
L
-
S
T
T
-
N
Q
V
L
A
C
G
G
Y
M
K
Q
S
-------------------
G
-----------------------------
Q
A
R
T
G
R
I
R
H
V
Y
V
L
P
E
A
R
S
H
G
----
I
G
T
A
L
-
L
E
K
I
M
S
E
A
------
F
L
--
T
Y
-
D
R
L
V
L
Y
----
S
E
Q
A
D
P
F
Y
Q
G
L
G
F
Q
L
--
V
S
G
-----------
E
-
K
I
T
-
H
T
-----
L
D
K
T
A
-
F
A
D
S
41
Fugue
52.56
17%
-90
- C1 -
2KCW
-
YJAB_ECOLI
A:
[1-147]
M
V
I
S
I
R
R
S
R
H
E
E
G
E
E
L
V
A
I
W
C
R
S
V
D
A
T
H
D
F
L
S
A
E
Y
R
---
T
-----
E
-----
L
----
E
-
D
L
V
R
---------
S
-----
F
---
L
-
P
-----
E
A
-
P
L
W
V
-
A
V
-
N
-
E
R
D
Q
P
V
G
F
M
L
L
S
G
Q
-------------------------------------------------------
H
M
D
A
L
F
I
D
P
D
V
R
G
C
G
----
V
G
R
V
L
-
V
E
H
A
L
S
M
A
------
P
E
L
-
T
T
N
V
N
---
E
Q
---
N
E
Q
A
V
G
F
Y
K
K
V
G
F
K
V
--
T
G
R
-----------
S
-
E
V
D
-
D
L
GKP
Y
P
L
L
N
L
A
-
Y
V
G
A