@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1492: (2016-01-29 )
MRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVFSQVSMSHPINLCLAELDRAAIGRLWAPVDAFYMDHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWSEVEHEFR
Atome Classification :
(20 SA)
-.........10........20........30...--..--.--..40.......---.50..----...-...60........---------70..-------.-.....80....---....90...-------.....100-----.------.-..----....110......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-M
R
K
I
F
L
ACPYSHA
D
A
E
V
V
E
Q
R
F
R
A
C
N
E
V
A
A
T
I
V
R--A
G
--
H
--
V
V
F
S
QVSMSH
P
---
I
N
L
C
L
----
A
E
L
-
D
R
A
A
I
G
R
LWA
P
V
D
---------
A
F
Y
M
-------
D
-
H
L
E
E
L
I
V
L
DLP---GWRDSA
G
I
R
-------
R
E
M
E
F
F
E
------A------G-G
Q
----
R
V
S
L
W
S
E
V
E
H
EFR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
98.33
100%
-137
- C5 -
1T1J
-
?
A:
[1-118]
-
M
R
K
I
F
L
A
C
P
Y
S
H
A
D
A
E
V
V
E
Q
R
F
R
A
C
N
E
V
A
A
T
I
V
R
--
A
G
--
H
--
V
V
F
S
Q
V
S
M
S
H
P
---
I
N
L
C
L
----
A
E
L
-
D
R
A
A
I
G
R
L
W
A
P
V
D
---------
A
F
Y
M
-------
D
-
H
L
E
E
L
I
V
L
D
L
P
---
G
W
R
D
S
A
G
I
R
-------
R
E
M
E
F
F
E
------
A
------
G
-
G
Q
----
R
V
S
L
W
S
E
V
E
H
E
F
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
94.02
90%
-143
- C5 -
1T1J
-
?
A:
[1-118]
-
M
R
K
I
F
L
A
C
P
Y
S
H
A
D
A
E
V
V
E
Q
R
F
R
A
C
N
E
V
A
A
T
I
V
R
--
A
G
--
H
--
V
V
F
S
Q
V
S
M
S
H
P
---
I
--------------
N
L
C
L
A
E
L
D
R
A
A
I
G
R
L
W
A
P
V
D
A
F
Y
M
-------
D
-
H
L
E
E
L
I
V
L
D
L
P
---
G
W
R
D
S
A
G
I
R
-------
R
E
M
E
F
F
E
------
A
------
G
-
G
Q
----
R
V
S
L
W
S
E
V
E
H
E
F
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
74.81
100%
-50
- C5 -
1T1J
-
?
A:
[0-118]
H
M
R
K
I
F
L
A
C
P
Y
S
H
A
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R
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A
A
T
I
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--
A
G
--
H
--
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V
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S
Q
V
S
M
S
H
P
---
I
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C
L
----
A
E
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-
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R
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V
D
---------
A
F
Y
M
-------
D
-
H
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E
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P
---
G
W
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-------
R
E
M
E
F
F
E
------
A
------
G
-
G
Q
----
R
V
S
L
W
S
E
V
E
H
E
F
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
58.85
17%
-107
- C5 -
3EHD
1
?
A:
[4-108]
-
M
T
K
I
Y
F
A
G
P
L
F
S
Q
A
D
L
R
------
Y
N
A
Y
L
V
E
Q
I
R
Q
L
D
K
T
--
I
--
D
L
Y
L
P
Q
E
N
A
A
I
---
N
---------
D
K
-
S
A
Y
A
D
S
K
M
I
A
L
A
D
---------
T
E
N
V
-------
L
-
A
S
D
L
L
V
A
-
L
L
D
---
G
P
T
I
D
A
G
V
A
-------
S
E
I
G
V
A
Y
------
A
------
K
-
G
I
----
P
V
V
A
L
Y
T
D
S
R
Q
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
56.88
12%
-125
- C5 -
2KHZ
-
DNPH1_RAT
A:
[9-111]
-
P
C
S
V
Y
F
C
G
S
I
R
G
G
R
E
D
-----
Q
A
L
Y
A
R
I
V
S
R
L
R
R
--
Y
G
--
K
--
V
L
T
E
H
V
A
D
A
E
L
----
E
P
L
G
-----
E
--
E
A
A
G
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D
Q
F
I
H
E
Q
D
---------
L
N
W
L
-------
Q
-
Q
A
D
V
V
V
A
E
-
V
T
---
Q
--
P
S
L
G
V
G
-------
Y
E
L
G
R
A
V
------
A
------
L
-
G
K
----
P
I
L
C
L
F
R
P
Q
S
G
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
51.33
10%
-113
- C5 -
1F8Y
1
NTD_LACLE
A:
[3-117]
-
K
K
T
I
Y
F
G
A
G
W
F
T
D
R
Q
------
N
K
A
Y
K
E
A
M
E
A
L
K
E
--
N
P
TI
D
LE
N
S
Y
V
P
L
D
N
Q
Y
K
GIR
V
D
E
H
P
----
E
Y
L
-
H
D
K
V
W
A
T
A
T
Y
N
N
D
---------
L
N
G
I
-------
K
-
T
N
D
I
M
L
G
V
-
Y
I
---
P
D
E
E
D
V
G
L
G
-------
M
E
L
G
Y
A
L
------
S
------
Q
-
G
K
----
Y
V
L
L
V
I
P
D
E
D
Y
G
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
49.77
11%
-102
- C5 -
2F62
2
?
A:
[13-109]
---
Y
I
A
G
P
A
V
F
N
P
D
M
G
A
------
S
Y
Y
N
K
V
R
E
L
L
K
K
--
E
N
--
V
--
M
P
L
I
P
T
D
N
E
A
--------------------
T
E
A
L
D
I
R
Q
K
N
---------
I
Q
M
I
-------
K
-
D
C
D
A
V
I
A
D
-
L
S
PFR
G
H
E
P
D
C
G
T
A
-------
F
E
V
G
C
A
A
------
A
------
L
-
N
K
----
M
V
L
T
F
T
S
D
R
R
N
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.07
17%
-82
- C4 -
2N2H
-
?
B:
[1-125]
S
N
A
E
H
I
Y
R
C
E
D
E
R
F
E
L
D
V
V
L
E
T
N
L
A
T
I
R
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E
A
I
Q
K
--
K
L
--
S
--
R
L
S
A
E
E
Q
A
K
F
R
---
L
D
N
T
L
GGTS
E
V
I
-
H
R
K
A
L
Q
R
I
Y
A
D
K
A
---------
A
D
I
I
-------
D
-
G
L
R
K
N
P
S
I
A
V
P
---
I
V
L
K
R
L
K
M
K
-------
E
E
-
E
W
R
E
------
A
------
Q
-
R
G
----
F
N
K
V
W
R
E
Q
N
E
K
Y
Y
LKS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
42.41
20%
-58
- C3 -
2B0J
-
HMD_METJA
A:
[1-344]
-
M
K
I
A
I
L
G
A
G
C
Y
R
T
H
A
A
A
G
I
T
N
F
M
R
A
C
E
V
A
K
E
V
G
K
------------
P
E
I
A
L
T
H
S
---
S
I
T
Y
G
----
A
E
L
-
L
H
L
V
-----------------------------
P
-
D
V
K
E
V
I
V
S
D
-
P
---
C
F
A
E
E
P
G
L
V
VIDEFD
P
K
E
V
M
E
A
H
------
L
------
S
-
G
N
----
P
E
S
I
M
P
K
I
R
E
V
V
K
A
K
A
K
E
LPKPPK
A
C
I
H
LVHPEDVG
L
K
V
T
SD
D
R
E
A
V
EGAD
I
V
I
T
WLPKGNK
Q
P
D
I
I
K
K
F
A
DAIPEG
A
I
V
T
H
ACTIP
T
T
K
F
A
K
I
F
K
D
L
GREDLN
I
T
S
YHPGCVPEM
K
G
Q
V
Y
I
A
E
GYAS
E
E
A
V
N
K
L
Y
E
I
G
K
I
A
R
G
K
A
F
K
M
P
ANLIGPVCDMC
S
A
V
T
A
T
V
Y
A
G
L
L
A
Y
R
D
A
V
TKILGAP
A
D
F
A
Q
M
M
A
D
E
A
L
T
Q
I
H
N
L
M
K
E
K
GIANMEEALDPAALLGTADSMCFGPL
A
E
I
L
P
T
A
L
K
V
L
E
K
H
KVVE
33
Fugue
39.74
21%
-61
* C4 *
3M8E
-
?
A:
[-15-102]
-----
F
----
Y
T
L
N
I
A
E
I
A
E
R
I
G
N
--
D
D
C
A
Y
Q
V
L
M
--
A
F
--
I
--
N
E
N
G
E
A
Q
M
L
N
-----
K
T
A
V
----
A
E
M
-
I
Q
L
S
K
P
T
V
F
A
T
V
N
---------
S
F
Y
C
-------
A
G
Y
I
D
E
T
R
V
-------------
G
R
S
-------
K
I
Y
T
L
S
D
------
L
------
G
-
V
E
----
I
V
E
C
F
K
Q
K
A
M
E
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
38.83
18%
-65
- C4 -
2L8K
-
A:
[1-123]
--
G
L
T
A
T
L
A
A
L
T
D
D
D
F
Q
F
L
S
D
V
L
D
C
R
A
V
R
S
A
M
N
L
R
--
A
A
--
L
--
T
S
F
Q
V
A
Q
Y
R
N
I
---
L
N
A
S
L
----
Q
V
D
R
D
A
A
R
S
R
R
L
M
A
K
L
A
---------
D
F
A
V
E
Q
E
V
T
A
G
D
-
R
V
V
V
I
D
G
L
D
R
M
---
A
H
F
K
D
D
L
V
L
-------
V
P
L
T
T
K
V
------
V
------
G
-
G
S
----
R
C
T
I
C
D
V
V
K
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
38.38
18%
-69
- C5 -
1RCU
-
?
A:
[90-128]
-----------------------------------------------------------------------------------
S
---------
F
V
L
L
-------
R
-
N
A
D
V
V
V
S
I
--
G
---
G
---
E
I
G
T
A
-------
I
E
I
L
G
A
Y
------
A
------
L
-
G
K
----
P
V
I
L
L
R
G
T
G
G
W
T
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.95
26%
-63
- C5 -
2A33
1
LOG3_ARATH
A:
[103-147]
-----------------------------------------------------------------------------------
K
---------
A
E
M
A
-------
K
-
H
S
D
A
F
I
A
L
--
P
---
G
---
G
Y
G
T
L
-------
E
E
L
L
E
V
I
T
W
A
Q
L
G
I
------
H
-
D
K
----
P
V
G
L
L
N
V
D
G
Y
Y
N
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
35.64
26%
-85
- C5 -
1YDH
1
LOG8_ARATH
A:
[100-143]
---------------------------------------------------------------------------------------------
A
A
M
A
-------
Q
-
E
A
E
A
F
I
A
L
--
P
---
G
G
---
Y
G
T
M
-------
E
E
L
L
E
M
I
------
T
W
S
Q
L
GI
H
-
K
K
----
T
V
G
L
L
N
V
D
G
Y
Y
N
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.40
13%
-68
- C5 -
2IZ6
-
?
A:
[94-131]
---------------------------------------------------------------------------------------------
N
I
N
A
-------
L
-
S
S
N
V
L
V
A
V
--
G
---
M
---
G
P
G
T
A
-------
A
E
V
A
L
A
L
------
K
------
A
-
K
K
----
P
V
V
L
L
G
T
Q
P
E
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.26
14%
-61
- C5 -
3UQZ
1
?
A:
[206-249]
--------------------------------------------------------------------------------
P
A
R
N
---------
R
I
I
A
-------
G
-
L
C
R
G
V
I
V
A
------
E
A
K
M
R
S
G
S
L
-------
I
T
C
E
R
A
M
------
E
------
E
-
G
R
----
D
V
F
A
I
P
G
S
I
L
D
G
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.08
19%
-16
- C5 -
3HYN
-
?
A:
[71-118]
---------------------------------------------------------------------------------
P
R
L
---------
H
T
R
L
-------
D
-
N
S
K
N
I
I
L
F
L
S
S
---
I
T
A
N
S
R
A
L
R
-------
E
E
M
N
Y
G
I
------
G
------
T
K
G
L
----
P
V
I
V
I
Y
P
D
Y
D
K
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
35.03
18%
-74
- C5 -
3SBX
2
LOGH_MYCMM
A:
[104-147]
----------------------------------------------------------------------------------------------
V
M
E
-------
D
-
R
A
N
A
F
I
T
L
--
P
---
G
---
G
V
G
T
L
-------
D
E
L
L
D
V
W
T
E
G
Y
LG
M
------
H
-
D
K
----
S
I
V
V
L
D
P
W
G
H
F
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
34.98
19%
-73
- C5 -
3QUA
-
?
A:
[113-155]
----------------------------------------------------------------------------------------------
E
M
E
-------
H
-
R
S
D
A
F
I
A
L
--
P
---
G
---
G
I
G
T
L
-------
E
E
F
F
E
A
W
------
T
A
G
Y
L
GM
H
-
D
K
----
P
L
I
L
L
D
P
F
G
H
Y
D
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
34.25
10%
-68
* C5 *
2NX2
-
YPSA_BACSU
A:
[118-170]
------------------------------------------------------------------------------
Q
F
K
Q
K
N
---------
Q
F
F
I
-------
D
-
K
S
D
G
L
L
L
L
-
Y
D
---
P
-
E
K
E
G
S
P
K
-------
Y
M
L
G
T
A
E
------
K
------
R
-
R
E
Q
DGY
P
I
Y
F
I
T
M
D
D
L
R
V
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------