@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00068_PA2A2_: (2014-08-14 )
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACY_A_5(1MH2)
PA2A2_NAJSG
[Raw transfer]




ACY_A_5(1XXW)
PA2A2_NAJSG
[Raw transfer]




GEL_B_8(1POB)
PA2A1_NAJAT
[Raw transfer]




GEL_A_7(1POB)
PA2A1_NAJAT
[Raw transfer]




OIN_A_3(3OSH)
PA2A3_NAJSG
[Raw transfer]




NAG_A_3(1Y75)
PA2A5_NAJSG
[Raw transfer]




AIN_A_2(1OXR)
PA2A3_NAJSG
[Raw transfer]




ANN_A_2(3NJU)
PA2A3_NAJSG
[Raw transfer]




NFL_A_3(1TD7)
PA2A3_NAJSG
[Raw transfer]




NAG_A_3(1OWS)
PA2A2_NAJNA
[Raw transfer]




MRD_A_4(1G4I)
PA21B_BOVIN
[Raw transfer]




EOH_A_4(1YXH)
PA2A4_NAJSG
[Raw transfer]




EOH_A_3(3Q4Y)
PA2A3_NAJSG
[Raw transfer]




MPD_D_4(1JLT)
PA2B_VIPAE
[Raw transfer]




MIY_A_4(2WQ5)
PA2A2_NAJNA
[Raw transfer]




MRD_A_5(1G4I)
PA21B_BOVIN
[Raw transfer]




ACY_A_4(1SZ8)
PA2A3_NAJSG
[Raw transfer]




EOH_A_5(1YXH)
PA2A4_NAJSG
[Raw transfer]




ACY_A_4(1YXL)
PA2A3_NAJSG
[Raw transfer]




CHAIN_P_2(3GCI)
PA2A3_NAJSG
[Raw transfer]

-

EDO_A_3(3V9M)
PA2BB_PSEAU
[Raw transfer]




IPA_A_3(1GMZ)
PA2B3_BOTPI
[Raw transfer]




MPD_A_7(1G4I)
PA21B_BOVIN
[Raw transfer]




CHAIN_B_2(3JQL)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_B_2(1MF4)
PA2A3_NAJSG
[Raw transfer]

-

MRD_C_3(1JLT)
PA2AI_VIPAE
[Raw transfer]




CHAIN_B_2(3JTI)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_B_2(3JQ5)
PA2A3_NAJSG
[Raw transfer]

-

ACY_A_5(1XXW)
PA2B1_NAJSG
[Raw transfer]




CHAIN_C_3(2RD4)
PA2A2_NAJSG
[Raw transfer]

-

CHAIN_B_2(2G58)
PA2B8_DABRR
[Raw transfer]

-

CHAIN_P_2(1T37)
PA2A3_NAJSG
[Raw transfer]

-

ACY_B_7(1S6B)
PA2A2_NAJSG
[Raw transfer]




PEG_A_8(3V9M)
PA2BB_PSEAU
[Raw transfer]




CHAIN_P_2(1ZM6)
PA2A3_NAJSG
[Raw transfer]

-

CHAIN_C_3(2RD4)
PA2B1_NAJSG
[Raw transfer]

-

1 PsiBlast_PDB 97.1196%-127 - C8 -2WQ5 3.9 PA2A2_NAJNA
30 PsiBlast_CBE 95.7389%-124 - C8 -1S6B 3.2 PA2A2_NAJSG
2 PsiBlast_PDB 94.6695%-132 - C8 -1POB 6.7 PA2A1_NAJAT
26 PsiBlast_CBE 94.0589%-125 - C8 -1YXH 3.2 PA2A4_NAJSG
5 PsiBlast_PDB 94.0594%-130 - C8 -1OXR 2.9 PA2A3_NAJSG
8 PsiBlast_PDB 93.9994%-132 - C8 -1YXL 3.4 PA2A3_NAJSG
9 PsiBlast_PDB 93.9493%-125 - C8 -1T37 3.1 PA2A3_NAJSG
28 PsiBlast_CBE 93.7189%-123 - C8 -2RD4 5.5 PA2A2_NAJSG
29 PsiBlast_CBE 93.6389%-123 - C8 -1XXW Error PA2A2_NAJSG
7 PsiBlast_PDB 93.4594%-123 - C8 -1TD7 4.7 PA2A3_NAJSG
6 PsiBlast_PDB 93.3794%-131 - C8 -1SZ8 3.4 PA2A3_NAJSG
13 PsiBlast_PDB 93.3693%-129 - C8 -3JQ5 6.3 PA2A3_NAJSG
10 PsiBlast_PDB 93.3393%-127 - C8 -1ZM6 2.5 PA2A3_NAJSG
25 PsiBlast_CBE 93.1495%-129 - C8 -1POB 7.0 PA2A1_NAJAT
27 PsiBlast_CBE 93.0392%-121 - C8 -3GCI 5.3 PA2A3_NAJSG
47 HHSearch 92.8792%-126 - C8 -3JQL 5.6 PA2A3_NAJSG
17 PsiBlast_PDB 92.7193%-132 - C8 -3OSH 4.7 PA2A3_NAJSG
18 PsiBlast_PDB 92.1893%-126 - C8 -3Q4Y 3.2 PA2A3_NAJSG
12 PsiBlast_PDB 92.0993%-128 - C8 -1MF4 4.8 PA2A3_NAJSG
15 PsiBlast_PDB 91.4993%-124 - C8 -3NJU 3.3 PA2A3_NAJSG
32 PsiBlast_CBE 91.4485%-117 - C8 -1MH2 Error PA2A2_NAJSG
20 PsiBlast_PDB 91.4384%-123 - C8 -1XXW 3.5 PA2B1_NAJSG
16 PsiBlast_PDB 91.2893%-123 - C8 -3JTI 3.7 PA2A3_NAJSG
31 PsiBlast_CBE 91.1184%-123 - C8 -2RD4 2.1 PA2B1_NAJSG
33 PsiBlast_CBE 90.4787%-127 - C8 -1Y75 3.2 PA2A5_NAJSG
36 PsiBlast_CBE 89.5678%-120 - C8 -1MH2 - PA2B1_NAJSG
34 PsiBlast_CBE 89.2184%-121 - C8 -1OWS 3.1 PA2A2_NAJNA
55 HHSearch 80.9360%-117 - C8 -3V9M 2.6 PA2BB_PSEAU
53 HHSearch 78.0460%-114 - C8 -1G4I 3.0 PA21B_BOVIN
65 HHSearch 68.0439%-115 - C8 -1GMZ 2.5 PA2B3_BOTPI
64 HHSearch 67.4546%-119 - C8 -1JLT 2.8 PA2B_VIPAE
60 HHSearch 64.2637%-111 - C8 -2G58 2.0 PA2B8_DABRR
66 HHSearch 62.6339%-111 - C8 -1JLT 2.8 PA2AI_VIPAE