@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0729: (2016-03-18 )
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEG_C_3(1SPQ)
TPIS_CHICK
[Raw transfer]




G3P_B_5(3UWU)
TPIS_STAAR
[Raw transfer]




G3P_A_3(3UWU)
TPIS_STAAR
[Raw transfer]




G2H_A_3(3UWZ)
TPIS_STAAR
[Raw transfer]




PGA_A_3(1BTM)
TPIS_GEOSE
[Raw transfer]




PGH_B_4(1TPW)
TPIS_CHICK
[Raw transfer]




3PG_A_4(3UWW)
TPIS_STAAR
[Raw transfer]




PGH_A_3(3TAO)
TPIS_MYCTU
[Raw transfer]




PGA_D_4(1SU5)
TPIS_CHICK
[Raw transfer]




PGA_A_3(1SW7)
TPIS_CHICK
[Raw transfer]




PGA_B_4(1SW7)
TPIS_CHICK
[Raw transfer]




PGH_A_3(1TPW)
TPIS_CHICK
[Raw transfer]




PGH_A_2(2VXN)
TPIS_LEIME
[Raw transfer]




PGA_C_3(1SW3)
TPIS_CHICK
[Raw transfer]




PGA_B_4(1BTM)
TPIS_GEOSE
[Raw transfer]




PGA_D_4(1SW3)
TPIS_CHICK
[Raw transfer]




PGA_C_3(1SU5)
TPIS_CHICK
[Raw transfer]




PGA_C_3(2BTM)
TPIS_GEOSE
[Raw transfer]




PGA_B_4(1SSG)
TPIS_CHICK
[Raw transfer]




PGA_A_3(2J27)
TPIS_TRYBB
[Raw transfer]




PGH_B_4(7TIM)
TPIS_YEAST
[Raw transfer]




PGA_C_3(2BTM)
TPIS_GEOSE
[Raw transfer]




PGA_D_4(2BTM)
TPIS_GEOSE
[Raw transfer]




PGA_C_3(2BTM)
TPIS_GEOSE
[Raw transfer]




PGA_B_4(2YPI)
TPIS_YEAST
[Raw transfer]




G2H_B_5(3UWZ)
TPIS_STAAR
[Raw transfer]




3PG_B_6(3UWW)
TPIS_STAAR
[Raw transfer]




PGA_A_3(2YPI)
TPIS_YEAST
[Raw transfer]




PGA_A_3(4FF7)
TPIS_YEAST
[Raw transfer]




PGA_A_2(4BI6)
TPI1_GIAIN
[Raw transfer]




129_C_3(1IF2)
TPIS_LEIME
[Raw transfer]




PGH_A_3(7TIM)
TPIS_YEAST
[Raw transfer]




PGA_A_3(1SSG)
TPIS_CHICK
[Raw transfer]




PGA_A_2(4BI7)
TPI1_GIAIN
[Raw transfer]




2PG_B_7(3UWV)
TPIS_STAAR
[Raw transfer]




2PG_A_5(3UWV)
TPIS_STAAR
[Raw transfer]




GOL_B_4(3GVG)
TPIS_MYCTU
[Raw transfer]




PGH_A_3(3YPI)
TPIS_YEAST
[Raw transfer]




GOL_A_4(2VFE)
TPIS_PLAFA
[Raw transfer]




GOL_A_3(3GVG)
TPIS_MYCTU
[Raw transfer]




GOL_B_6(2VFE)
TPIS_PLAFA
[Raw transfer]




PGH_B_4(3YPI)
TPIS_YEAST
[Raw transfer]




GOL_B_5(3GVG)
TPIS_MYCTU
[Raw transfer]




TRS_H_8(2I9E)
?
[Raw transfer]




CIT_B_5(3M9Y)
TPIS_STAAR
[Raw transfer]




UVW_A_4(4MVA)
?
[Raw transfer]




GOL_B_18(4FF7)
TPIS_YEAST
[Raw transfer]




3PY_A_4(1O5X)
TPIS_PLAFA
[Raw transfer]




PEG_B_9(4MVA)
?
[Raw transfer]




MRD_A_2(4MKN)
?
[Raw transfer]




TRS_I_9(2I9E)
?
[Raw transfer]




EDO_A_5(3KXQ)
TPIS_BARHE
[Raw transfer]




EDO_A_5(3KXQ)
TPIS_BARHE
[Raw transfer]




23 PsiBlast_CBE 98.86100% -86 - C8 -3UWW 3.3 TPIS_STAAR
25 PsiBlast_CBE 98.85100% -87 - C8 -3UWU 4.1 TPIS_STAAR
2 PsiBlast_PDB 98.63100% -87 - C8 -3UWU 4.3 TPIS_STAAR
3 PsiBlast_PDB 98.47100% -85 - C8 -3UWV 2.7 TPIS_STAAR
24 PsiBlast_CBE 98.39100% -85 - C8 -3UWV 3.2 TPIS_STAAR
21 PsiBlast_CBE 98.13100% -86 - C8 -3M9Y 2.0 TPIS_STAAR
4 PsiBlast_PDB 98.01100% -86 - C8 -3UWW 3.8 TPIS_STAAR
6 PsiBlast_PDB 98.00100% -86 - C8 -3UWZ 2.1 TPIS_STAAR
5 PsiBlast_PDB 97.91100% -87 - C8 -3UWY - TPIS_STAAR -
22 PsiBlast_CBE 97.78100% -87 - C8 -3UWZ 2.1 TPIS_STAAR
1 PsiBlast_PDB 97.63100% -86 - C8 -3M9Y - TPIS_STAAR -
115 HHSearch 97.0199% -86 - C8 -3M9Y - TPIS_STAAR -
111 HHSearch 82.9459% -79 - C8 -2BTM 4.0 TPIS_GEOSE
7 PsiBlast_PDB 82.7357% -77 - C8 -2BTM 4.0 TPIS_GEOSE
9 PsiBlast_PDB 82.6553% -85 - C8 -4Y8F - ? -
101 Fugue 82.4358% -78 - C8 -2BTM 4.0 TPIS_GEOSE
26 PsiBlast_CBE 82.3657% -73 - C8 -2BTM 3.1 TPIS_GEOSE
122 HHSearch 80.9845% -80 - C8 -3TA6 - TPIS_MYCTU -
27 PsiBlast_CBE 80.9557% -72 - C8 -1BTM 3.2 TPIS_GEOSE
8 PsiBlast_PDB 80.9157% -73 - C8 -1BTM 3.3 TPIS_GEOSE
15 PsiBlast_PDB 78.0044% -76 - C8 -3TAO 4.0 TPIS_MYCTU
13 PsiBlast_PDB 77.5244% -76 - C8 -3GVG 2.3 TPIS_MYCTU
30 PsiBlast_CBE 77.3244% -76 - C8 -3GVG 2.9 TPIS_MYCTU
102 Fugue 75.9738% -63 - C8 -1IF2 4.3 TPIS_LEIME
119 HHSearch 75.7539% -69 - C8 -2VXN 4.3 TPIS_LEIME
45 PsiBlast_CBE 75.7443% -79 - C8 -2I9E 3.0 ?
114 HHSearch 75.6038% -74 - C8 -2J27 2.8 TPIS_TRYBB
43 PsiBlast_CBE 75.1843% -80 - C8 -2I9E 2.9 ?
61 PsiBlast_CBE 74.6341% -70 - C8 -7TIM 3.6 TPIS_YEAST
62 PsiBlast_CBE 74.1941% -71 - C8 -7TIM 3.9 TPIS_YEAST
66 PsiBlast_CBE 74.1441% -78 - C8 -3YPI 3.9 TPIS_YEAST
67 PsiBlast_CBE 74.0041% -74 - C8 -4FF7 2.1 TPIS_YEAST
90 PsiBlast_CBE 73.9642% -67 - C8 -4BI6 3.6 TPI1_GIAIN
97 PsiBlast_CBE 73.7841% -72 - C8 -4MKN 2.8 ?
73 PsiBlast_CBE 73.7042% -68 - C8 -4BI7 3.1 TPI1_GIAIN
64 PsiBlast_CBE 73.4941% -70 - C8 -2YPI 3.7 TPIS_YEAST
78 PsiBlast_CBE 73.4142% -69 - C8 -1SW3 3.2 TPIS_CHICK
87 PsiBlast_CBE 73.3042% -68 - C8 -1SSG 3.1 TPIS_CHICK
79 PsiBlast_CBE 73.2342% -68 - C8 -1SW3 3.3 TPIS_CHICK
63 PsiBlast_CBE 73.1941% -71 - C8 -2YPI 3.8 TPIS_YEAST
77 PsiBlast_CBE 73.1842% -72 - C8 -1SPQ Error TPIS_CHICK
84 PsiBlast_CBE 73.0942% -72 - C8 -1TPW 3.9 TPIS_CHICK
68 PsiBlast_CBE 72.9841% -71 - C8 -4FF7 3.4 TPIS_YEAST
71 PsiBlast_CBE 72.9643% -66 - C8 -1SW7 4.1 TPIS_CHICK
65 PsiBlast_CBE 72.7141% -76 - C8 -3YPI 3.4 TPIS_YEAST
72 PsiBlast_CBE 72.7043% -66 - C8 -1SW7 3.2 TPIS_CHICK
92 PsiBlast_CBE 72.6442% -65 - C8 -1SU5 3.3 TPIS_CHICK
85 PsiBlast_CBE 72.6342% -68 - C8 -1TPW 4.6 TPIS_CHICK
121 HHSearch 72.3538% -73 - C8 -1O5X 3.2 TPIS_PLAFA
86 PsiBlast_CBE 72.0642% -68 - C8 -1SSG 3.7 TPIS_CHICK
91 PsiBlast_CBE 71.7942% -63 - C8 -1SU5 3.1 TPIS_CHICK
125 HHSearch 69.9737% -74 - C8 -3KXQ 3.3 TPIS_BARHE
99 PsiBlast_CBE 69.4738% -62 - C8 -2VFE 2.5 TPIS_PLAFA
82 PsiBlast_CBE 69.3137% -74 - C8 -3KXQ 3.3 TPIS_BARHE
48 PsiBlast_CBE 68.3842% -60 - C8 -4MVA 3.7 ?
98 PsiBlast_CBE 68.3638% -63 - C8 -2VFE 2.2 TPIS_PLAFA
47 PsiBlast_CBE 67.4142% -63 - C8 -4MVA 2.0 ?