@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1487: (2016-03-26 )
MNYLESLYWIHERTKFGIKPGVKRMEWMLAQFNNPQNNIKGIHVGGTNGKGSTVAYLRTALVENGYEVGTFTSPFIETFNERISLNGVPISNDAIVELVSRIKPVSEMMERETDLGVATEFEIITAMMFLYFGEIHPVDFVIVEAGLGIKNDSTNVFTPVLSILTSIGLDHTDILGGTYLDIARDKGAIIKPNVPVIYAVKNEDALKYVRERAIEQHAKPIELDREIVVVSQNDEFTYRYKDYELETIILSMLGEHQKQNAALAITALIELNEQGLIELDFNKMIDGIESVRWTGRIEQVHDKPLIILDGAHNSESIDALIDTIKQYHDKEKVDILFSAINGKPINEMVKHLSLIAHTFYATEFDFPKALRKEEIVGSIENDEIQLVDDYVEFIKNYQGDTLVITGSLYFISEVKSKLDFEAL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

POP_A_3(1FGS)
?
[Raw transfer]



ADP_A_2(2VOS)
?
[Raw transfer]



ACP_A_2(2VOR)
?
[Raw transfer]



TLA_A_3(3NRS)
?
[Raw transfer]



POP_A_3(1FGS)
FOLC_LACCA
[Raw transfer]



UNL_A_8(1O5Z)
?
[Raw transfer]



UNL_A_8(1O5Z)
?
[Raw transfer]



GOL_A_8(3NRS)
?
[Raw transfer]



TLA_A_2(3NRS)
?
[Raw transfer]



GLU_A_6(3QCZ)
?
[Raw transfer]
17 HHSearch 97.9131%-102 - C1 -1O5Z 3.4 ?
2 PsiBlast_PDB 96.9832%-103 - C1 -2GCA - FOLC_LACCA -
1 PsiBlast_PDB 96.5132%-110 - C1 -1FGS 4.1 FOLC_LACCA
3 PsiBlast_PDB 95.9532%-101 - C1 -2GCB - FOLC_LACCA -
4 PsiBlast_PDB 95.8730% -95 - C1 -1O5Z 3.4 ?
19 HHSearch 88.7524% -89 - C1 -2VOS - ? -
20 HHSearch 87.0924% -88 - C1 -3NRS 3.1 ?
6 PsiBlast_PDB 83.8926% -86 - C1 -2VOS 8.9 ?
5 PsiBlast_PDB 83.2226% -88 - C1 -2VOR 6.7 ?
7 PsiBlast_PDB 82.6823% -75 - C1 -3PYZ - ? -
8 PsiBlast_PDB 82.6023% -73 - C1 -3QCZ 2.3 ?
43 Fugue 78.5934% -99 - C1 -1FGS Error ?
28 HHSearch 61.0916% -66 * C1 *1P3D - MURC_HAEIN -
25 HHSearch 58.7315% -68 - C1 -3LK7 - MURD_STRA5 -
29 HHSearch 52.3416% -92 - C1 -3EAG - ? -
47 Fugue 46.9628% -67 - C1 -1FGS - ? -
26 HHSearch 43.6818% 9 - C1 -3HN7 - ? -
30 HHSearch 42.2114% -70 - C1 -3MVN - ? -
23 HHSearch 42.1316% 1 - C1 -1GG4 - MURF_ECOLI -
27 HHSearch 41.6819% 9 - C1 -1J6U - MURC_THEMA -