@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1593: (2016-03-26 )
MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKELLDASRKQIAAMMSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIITSSIEHPSVRVVMEELEQEGFTVKYLPVDKNGVIKLEELKAALTDETILVSIMGVNNEVGSIQPLQEIGEMLSVLENTFFHVDFVQAIGKIPLTLDANSIDLLTFSGHKFHALRGTGILFKRKNVHLHPEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEALIEIRDYLLTKIAQMSDMTVHTKQSVAAPHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_3(3VAX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



ACY_E_5(1C0N)
SUFS_ECOLI
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



CSS_F_6(1ELU)
?
[Raw transfer]
35 HHSearch 96.1439% -95 - C1 -1EG5 4.0 ?
59 Fugue 93.4038% -98 * C1 *1ECX 3.8 ?
4 PsiBlast_PDB 93.0038% -92 - C1 -1EG5 4.0 ?
21 PsiBlast_CBE 91.4138% -91 - C1 -1ECX 3.9 ?
1 PsiBlast_PDB 90.8038% -95 - C1 -1ECX 3.9 ?
2 PsiBlast_PDB 89.9241% -82 - C1 -3LVJ - ISCS_ECO57 -
3 PsiBlast_PDB 89.7441% -83 - C1 -3LVK 3.5 ISCS_ECO57
22 PsiBlast_CBE 89.6441% -83 - C1 -3LVJ 3.9 ISCS_ECO57
7 PsiBlast_PDB 89.3234% -86 - C1 -4HVK - ISCS2_ARCFU -
61 Fugue 88.4732% -89 - C1 -4ISY - ISCSL_MYCTU -
23 PsiBlast_CBE 87.8834% -84 - C1 -4EB7 - ISCS2_ARCFU -
6 PsiBlast_PDB 87.8634% -82 - C1 -4EB7 - ISCS2_ARCFU -
24 PsiBlast_CBE 87.5134% -85 - C1 -4EB5 - ISCS2_ARCFU -
5 PsiBlast_PDB 87.0834% -82 - C1 -4EB5 - ISCS2_ARCFU -
11 PsiBlast_PDB 83.8031% -71 - C1 -3GZC - SCLY_HUMAN -
30 PsiBlast_CBE 83.4931% -74 - C1 -3GZD - SCLY_HUMAN -
41 HHSearch 83.1033% -70 - C1 -3A9Z 4.0 SCLY_RAT
28 PsiBlast_CBE 82.6732% -70 - C1 -3A9X 3.8 SCLY_RAT
10 PsiBlast_PDB 82.5732% -72 - C1 -3A9Z 4.0 SCLY_RAT
12 PsiBlast_PDB 82.3531% -72 - C1 -3GZD - SCLY_HUMAN -
27 PsiBlast_CBE 81.4732% -72 - C1 -3A9Y 4.3 SCLY_RAT
25 PsiBlast_CBE 81.4035% -84 - C1 -3VAX 3.8 ?
26 PsiBlast_CBE 81.1932% -72 - C1 -3A9Z 2.6 SCLY_RAT
8 PsiBlast_PDB 81.1935% -85 - C1 -3VAX 3.8 ?
38 HHSearch 81.0434% -84 - C1 -3VAX 3.8 ?
9 PsiBlast_PDB 80.9432% -76 - C1 -3A9X 4.4 SCLY_RAT