@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2786c: (2016-05-13 )
MRRRLAIVQRWRGQDEIPTDWGRCVLTIGVFDGVHRGHAELIAHAVKAGRARGVPAVLMTFDPHPMEVVYPGSHPAQLTTLTRRAELVQDLGIEVFLVMPFTTDFMKLTPDRFIHELLVEHLHVVEVVVGENFTFGKKAAGNVDTLRRAGERFGFAVESMSLVSEHHSNETVTFSSTYIRSCVDAGDMVAAMEALGRPHRVEGVVVRGEGRGAELGFPTANVAPPMYSAIPADGVYAAWFTVLGHGPVTGTVVPGERYQAAVSVGTNPTFSGRTRTVEAFVLDTTADLYGQHVALDFVGRIRGQKKFESVRQLVAAMGADTERARDLLSTG

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMN_A_3(5A89)
RIBF_CORAM
[Raw transfer]



FMN_A_3(5A8A)
RIBF_CORAM
[Raw transfer]



FMN_A_3(5A89)
RIBF_CORAM
[Raw transfer]



FMN_B_8(5A89)

[Raw transfer]



FMN_B_9(5A8A)

[Raw transfer]



ADP_A_5(5A88)
RIBF_CORAM
[Raw transfer]



ADP_B_9(5A88)
RIBF_CORAM
[Raw transfer]



ADP_C_12(5A88)
RIBF_CORAM
[Raw transfer]



ADP_D_16(5A88)

[Raw transfer]



FMN_A_4(1P4M)
RIFK_HUMAN
[Raw transfer]



ADP_C_3(1T6X)
?
[Raw transfer]



LUM_B_5(1S4M)
?
[Raw transfer]



ADP_C_3(1T6Y)
?
[Raw transfer]
4 PsiBlast_PDB 97.4645%-126 - C5 -3ZUG - RIBF_CORAM -
23 PsiBlast_CBE 97.1945%-124 - C5 -2X0K - RIBF_CORAM -
35 HHSearch 97.1345%-123 - C5 -2X0K - RIBF_CORAM -
2 PsiBlast_PDB 96.9245%-124 - C5 -4UZF - RIBF_CORAM -
1 PsiBlast_PDB 96.6645%-123 * C5 *4UZE - RIBF_CORAM -
3 PsiBlast_PDB 96.5645%-125 - C5 -2X0K - RIBF_CORAM -
22 PsiBlast_CBE 96.3745%-128 - C5 -4UZF - RIBF_CORAM -
24 PsiBlast_CBE 96.0245%-125 - C5 -3ZUG - RIBF_CORAM -
21 PsiBlast_CBE 95.3745%-123 - C5 -4UZE - RIBF_CORAM -
36 HHSearch 82.2733%-118 - C5 -3OP1 - ? -
5 PsiBlast_PDB 77.0831%-111 - C5 -3OP1 - ? -
33 PsiBlast_CBE 72.4431%-123 - C5 -1S4M 5.5 ?
30 PsiBlast_CBE 72.0231%-117 - C5 -1T6Z - ? -
34 PsiBlast_CBE 71.4931%-121 - C5 -1MRZ - ? -
37 HHSearch 71.1232%-119 - C5 -1MRZ - ? -
13 PsiBlast_PDB 70.7531%-119 - C5 -1S4M - ? -
32 PsiBlast_CBE 69.6631%-119 - C5 -1T6X - ? -
9 PsiBlast_PDB 69.4831%-116 - C5 -1MRZ - ? -
31 PsiBlast_CBE 69.4631%-115 - C5 -1T6Y - ? -
11 PsiBlast_PDB 69.0831%-111 - C5 -1T6Y 5.2 ?
10 PsiBlast_PDB 68.0031%-115 - C5 -1T6X 4.7 ?
6 PsiBlast_PDB 57.8653%-108 - C5 -5A88 6.6 RIBF_CORAM
8 PsiBlast_PDB 56.4153% -98 - C5 -5A8A 10.2 RIBF_CORAM
26 PsiBlast_CBE 56.3853% -99 - C5 -5A89 10.1
29 PsiBlast_CBE 55.7953%-122 - C5 -5A88 7.8 RIBF_CORAM
27 PsiBlast_CBE 55.4853%-112 - C5 -5A88 7.6
28 PsiBlast_CBE 55.4153%-111 - C5 -5A88 6.6 RIBF_CORAM
7 PsiBlast_PDB 54.9353% -95 - C5 -5A89 10.0 RIBF_CORAM
38 HHSearch 54.8553% -94 - C5 -5A89 10.0 RIBF_CORAM
25 PsiBlast_CBE 54.4753% -99 - C5 -5A8A 10.0
18 PsiBlast_PDB 45.8033% -93 - C5 -1P4M 5.9 RIFK_HUMAN