@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2263: (2016-02-06 )
MKKVVLYKRLSAPLMERLRERVEVLLVEEPGRDGLARLRDALPEAHGLLGASLRLDAGLLDLAPRLEAIASVSVGVDNYDIDYLDRRGILLSNTPDVLTETTADTGFALILATARRVVELAGWVRAGEWKKSVGAAQFGTDVHGKTLGIVGMGRIGEALARRGHHGFGMRVLYHSHSPKPHVEERYAASYRPLDALLEESDFVCLTLPLTAATEGLIGAAQFARMRPQAIFINISRGRVVDEAALIEALAQRRIRAAGLDVFEREPLSPDSPLLRLPNVVATPHIGSATEETREAMARCAVDNLLAALAGARPLNLVNPSAWARRRGA

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_7(2DBZ)
GYAR_PYRHO
[Raw transfer]




NDP_K_11(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAP_B_8(2DBZ)
GYAR_PYRHO
[Raw transfer]




NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]




NAD_A_3(4NU6)
PTXD_PSEST
[Raw transfer]




NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]




NAP_A_2(3BAZ)
HPPR_PLESU
[Raw transfer]




NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAD_B_5(4NU6)
PTXD_PSEST
[Raw transfer]




NDP_L_12(2GCG)
GRHPR_HUMAN
[Raw transfer]




NDP_J_10(2GCG)
GRHPR_HUMAN
[Raw transfer]




NAD_A_3(4NU5)
PTXD_PSEST
[Raw transfer]




NAD_B_4(4NU5)
PTXD_PSEST
[Raw transfer]




NAD_D_4(1WWK)
?
[Raw transfer]




NAP_B_4(4E5M)
PTXD_PSEST
[Raw transfer]




NAP_A_3(4E5M)
PTXD_PSEST
[Raw transfer]




GOL_A_5(2DBQ)
GYAR_PYRHO
[Raw transfer]




FMT_A_4(1HKU)
CTBP1_RAT
[Raw transfer]




GOL_A_3(3K5P)
?
[Raw transfer]




NHE_E_5(2CUK)
?
[Raw transfer]




115 HHSearch 96.7745%-111 - C1 -2DBQ 9.5 GYAR_PYRHO
130 HHSearch 93.4646%-124 - C1 -2CUK - ? -
10 PsiBlast_PDB 90.8145%-124 - C1 -2CUK - ? -
32 PsiBlast_CBE 88.9345%-120 - C1 -2CUK 3.3 ?
125 HHSearch 86.0037%-117 - C1 -3BA1 - HPPR_PLESU -
116 HHSearch 85.6039%-116 - C1 -2GCG 7.3 GRHPR_HUMAN
24 PsiBlast_CBE 84.2650%-105 - C1 -2DBR - GYAR_PYRHO -
5 PsiBlast_PDB 83.5749%-108 - C1 -2DBQ 9.5 GYAR_PYRHO
1 PsiBlast_PDB 82.8750%-106 - C1 -2DBR - GYAR_PYRHO -
2 PsiBlast_PDB 82.8450%-107 - C1 -2DBZ 9.4 GYAR_PYRHO
26 PsiBlast_CBE 82.5550%-106 - C1 -2DBR - GYAR_PYRHO -
60 PsiBlast_CBE 82.4332%-118 * C1 *1GDH - DHGY_HYPME -
61 PsiBlast_CBE 82.2732%-116 - C1 -1GDH - DHGY_HYPME -
127 HHSearch 81.9634%-112 - C1 -1MX3 - CTBP1_HUMAN -
12 PsiBlast_PDB 81.9137%-118 - C1 -3DC2 - SERA_MYCTU -
21 PsiBlast_CBE 81.6850%-109 - C1 -2DBZ 9.1 GYAR_PYRHO
20 PsiBlast_PDB 81.5336%-100 - C1 -4EBF - PTXD_PSEST -
25 PsiBlast_CBE 81.2650%-104 - C1 -2DBR - GYAR_PYRHO -
22 PsiBlast_CBE 81.2050%-104 - C1 -2DBR - GYAR_PYRHO -
124 HHSearch 81.0833%-116 - C1 -1WWK - ? -
15 PsiBlast_PDB 79.4435%-100 - C1 -4E5M 8.3 PTXD_PSEST
41 PsiBlast_CBE 78.8435% -99 - C1 -4E5M 9.3 PTXD_PSEST
19 PsiBlast_PDB 78.5935% -98 - C1 -4NU5 10.3 PTXD_PSEST
52 PsiBlast_CBE 78.0935%-101 - C1 -4NU6 10.3 PTXD_PSEST
30 PsiBlast_CBE 76.7344%-113 - C1 -2GCG 6.9 GRHPR_HUMAN
3 PsiBlast_PDB 76.4944%-117 - C1 -2GCG 7.6 GRHPR_HUMAN
18 PsiBlast_PDB 76.0335%-100 - C1 -4NU6 10.4 PTXD_PSEST
53 PsiBlast_CBE 75.8435% -96 - C1 -4NU5 10.3 PTXD_PSEST
56 PsiBlast_CBE 75.0234%-111 - C1 -1WWK 7.1 ?
31 PsiBlast_CBE 74.3244%-117 - C1 -2GCG 8.2 GRHPR_HUMAN
9 PsiBlast_PDB 73.7142%-113 - C1 -3BAZ 8.7 HPPR_PLESU
97 PsiBlast_CBE 66.8035%-100 - C1 -1HKU 2.6 CTBP1_RAT
92 PsiBlast_CBE 66.7733%-102 - C1 -3K5P 3.3 ?