@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00410: (2016-06-01 )
MKIKEIIVVEGRDDTARIKLAVDADTIETNGSAIDDHVIDQIRLAQKTRGVIILTDPDFPGEKIRKTISEAVPGCKHAFLPKHLAKPKNKRGIGVEHASVESIRACLENVHEEMEAQPSDISAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQKRLQMFQIKKSDFMSALDTVMREEQNE
Atome Classification :
(20 SA)
--.........10....-.....20.-----.--.----....--.30.-------..------------------------.--------------------------------------..--..---40.---------...---..--.----.50......----------..60-----------------..--------......70..-------..-....80....--....90---------.....---.-...100.......110.---------...-...120..--...-----..--.130.......--------140.......150.--....--------..160..-.-----....170--....-....180....------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--MK
I
K
E
I
I
V
VE-GRDD-
T
A
R
I
K
L
A
V
-----D--A----
D
T
IE--TNGS-------A
I
------------------------
D
--------------------------------------
D
H
--
V
I
---
D
Q
I
---------
R
L
A
---
Q
K--T----R
G
V
I
I
L
TDP----------DF
P
G
-----------------
E
K
--------
I
R
K
T
I
S
E
AVP-------G
C
-
K
H
A
F
L
P
K
H
LA--KPKNK----------RGIGV---E-HA
S
V
E
S
I
R
A
C
L
E
N
V
H
E
E
---------MEA-QPSD-I
S
A
--
E
D
L
-----
I
H
--AGLIGG
P
A
A
K
C
--------
R
R
E
R
L
G
D
L
L
K
IGYT--
N
G
K
Q
--------
L
Q
K
R
L
Q
M
-
F
-----QI
K
K
S
D
---
F
M
S
A
-
L
D
T
V
M
R
E
EQNE------
30
HHSearch
84.14
25%
-95
* C3 *
2GAI
-
TOP1_THEMA
A:
[7-142]
------
K
Y
I
V
V
E
-
S
P
A
K
-
A
K
T
I
K
S
I
L
-----
G
NE
Y
----
E
V
F
A
--
S
M
G
H
-------
I
I
DLPKSKFGVDLEKDF
E
P
E
F
A
VIKG
K
--------------------------------------
E
K
--
V
V
---
E
K
L
---------
K
D
L
---
A
K
--
K
----
G
E
L
L
I
A
S
D
M
----------
D
R
E
G
-----------------
E
A
--------
I
A
W
H
I
A
R
V
T
N
-------
T
L
-----
G
R
K
--
N
--
R
----------------
I
V
F
---
S
-
E
I
T
P
R
V
I
R
E
A
V
K
N
P
R
E
--------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
80.86
24%
-90
- C3 -
2FCJ
-
?
A:
[3-108]
---
R
V
E
K
V
I
I
V
E
-
G
R
S
D
-
K
Q
K
V
A
A
V
L
-----
N
--
E
P
V
--
V
I
V
C
--
T
N
G
T
--------
I
------------------------
S
--------------------------------------
D
A
--
R
L
---
E
E
L
---------
A
D
E
---
L
E
--
G
----
Y
D
V
Y
L
L
A
D
A
----------
D
E
A
G
-----------------
E
K
--------
L
R
R
Q
F
R
R
M
F
P
-------
E
A
-
E
H
L
Y
I
D
R
--
A
--
Y
----------------
R
E
V
---
A
-
A
A
P
I
W
H
L
A
Q
V
L
L
R
A
R
F
D
---------
V
---------------------------------------------------------------------------------------------------------------------
24
HHSearch
72.94
22%
-87
- C3 -
1DD9
1
DNAG_ECOLI
A:
[163-272]
----
P
N
R
L
L
V
V
E
-
G
Y
M
D
-
V
V
A
L
A
Q
Y
G
-----
I
--
N
----
Y
A
V
A
--
S
L
G
--------
S
T
------------------------
T
--------------------------------------
A
D
--
H
I
---
Q
L
L
---------
F
R
A
-------
T
----
N
N
V
I
C
C
Y
D
G
----------
D
R
A
G
-----------------
R
D
--------
A
A
W
R
A
L
E
T
A
L
PYMTDG
R
Q
L
-
R
F
M
F
L
P
D
G
E
---
D
P
---------------
D
T
L
---
V
R
K
E
G
K
E
A
F
E
A
R
M
E
Q
A
M
P
--------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
70.40
18%
-82
- C3 -
5D5H
5
TOP1_MYCTU
A:
[19-157]
----
G
R
R
L
V
I
V
E
-
S
P
T
K
-
A
R
K
L
A
S
Y
L
-----
G
SG
Y
----
I
V
E
S
--
S
R
G
H
-------
I
R
------------------------
D
LPRAASDVPAKYKSQPWARLGVNVDADF
E
P
L
Y
I
I
S
PEK
R
S
--
T
V
---
S
E
L
---------
R
G
L
---
L
K
D
-
V
----
D
E
L
Y
L
A
T
D
G
----------
D
R
E
G
-----------------
E
A
--------
I
A
W
H
L
L
E
T
L
K
-------
P
R
-----
I
P
V
--
K
--
R
----------------
M
V
F
---
H
-
E
I
T
E
P
A
I
R
A
A
A
E
H
P
R
D
--------------------------------------------------------------------------------------------------------------------------------
42
Fugue
69.67
20%
-56
- C2 -
4G3A
-
CLASP_DROME
A:
[5-231]
KP
S
D
L
D
G
F
I
Q
-
Q
M
P
K
A
D
M
R
V
K
V
Q
L
A
E
-----
D
--
L
----
V
T
F
L
--
S
D
D
T
NSIV---
C
T
------------------------
D
M
-------------------------------------
G
F
--
L
I
---
D
G
L
M
PWLTGSH
F
K
I
A
---
Q
K
--
S
L
E
A
F
S
E
L
I
K
R
L
G
S
----------
D
F
N
A
YTATV
L
P
H
V
I
D
R
L
G
DSR
D
T
--------
V
R
E
K
A
Q
L
L
L
R
-------
D
L
M
E
H
R
V
L
P
P
Q
A
L
--
I
D
K
L
A
----------
T
S
C
-
F
---
K
-
H
K
N
A
K
V
R
E
E
F
L
Q
T
I
V
N
A
---------
L
H
E
Y
G
T
Q
Q
-
L
S
V
--
R
V
Y
-----
I
P
P
V
C
A
L
L
G
D
P
T
V
N
V
--------
R
E
A
A
I
Q
T
L
V
E
I
Y
K
H
--
V
G
D
R
--------
L
R
P
D
L
R
R
M
D
-----
D
V
P
A
S
K
---
L
--
A
M
L
E
Q
K
F
D
Q
V
K
L
E
------
2
PsiBlast_PDB
66.65
25%
-78
- C3 -
2FCJ
-
?
A:
[3-84]
---
R
V
E
K
V
I
I
V
E
-
G
R
S
D
-
K
Q
K
V
A
A
V
L
-----
N
--
E
----
P
V
V
I
V
C
T
N
G
T
--------
I
------------------------
S
--------------------------------------
D
A
--
R
L
---
E
E
L
---------
A
D
E
---
L
E
--
G
----
Y
D
V
Y
L
L
A
D
A
----------
D
E
A
G
-----------------
E
K
--------
L
R
R
Q
F
R
R
M
F
P
-------
E
A
-
E
H
L
Y
I
D
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
66.52
21%
-31
- C1 -
4AW9
7
LGMN_HUMAN
A:
[1-263]
--
G
G
K
H
W
V
V
I
V
A
-
G
S
N
G
-
W
Y
N
Y
R
H
Q
A
-----
D
--
A
C
H
A
Y
Q
I
I
H
--
R
N
G
I
-------
P
D
------------------------
E
--------------------------------------
Q
I
--
V
V
M
M
Y
D
D
I
---------
A
Y
S
---
E
D
NP
T
----
P
G
I
V
I
N
R
P
N
GTDVYQGVPK
D
Y
T
G
-----------------
E
D
VT
P
Q
N
F
L
A
V
L
R
G
D
A
E
A
V
K
-------
G
I
-
G
S
G
K
V
L
K
--
S
--
G
P
Q
D
H
V
F
I
Y
F
T
D
H
G
S
T
G
I
L
V
F
P
N
E
-
D
L
H
V
K
D
L
N
E
T
I
H
Y
M
Y
K
H
KMYR
K
M
V
F
Y
I
E
A
-
C
E
S
G
-
S
M
M
--
N
H
L
PDNIN
V
Y
--
A
T
T
A
A
N
P
R
E
S
S
Y
A
C
YYDEK
R
S
T
Y
L
G
D
W
Y
S
V
N
W
M
--
E
D
S
D
V
EDLTKET
L
H
K
Q
Y
H
L
-
V
-----
K
S
H
T
Q
T
S
H
V
M
Q
Y
G
-
N
K
T
I
S
T
M
K
V
M
Q
FQGMKR
1
PsiBlast_PDB
66.49
25%
-75
- C3 -
2I5R
3
?
A:
[6-87]
---
R
V
E
K
V
I
I
V
E
-
G
R
S
D
-
K
Q
K
V
A
A
V
L
-----
N
--
E
----
P
V
V
I
V
C
T
N
G
T
--------
I
------------------------
S
--------------------------------------
D
A
--
R
L
---
E
E
L
---------
A
D
E
---
L
E
--
G
----
Y
D
V
Y
L
L
A
D
A
----------
D
E
A
G
-----------------
E
K
--------
L
R
R
Q
F
R
R
M
F
P
-------
E
A
-
E
H
L
Y
I
D
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
65.83
24%
-75
- C3 -
4EDG
4
DNAG_STAAU
A:
[152-233]
----
L
D
E
I
V
L
L
E
-
G
F
M
D
-
V
I
K
S
D
T
A
G
-----
L
--
K
----
N
V
V
A
--
T
M
G
T
-------
Q
L
------------------------
S
--------------------------------------
D
E
--
H
I
---
T
F
I
---------
R
K
L
-------
T
----
S
N
I
T
L
M
F
D
G
----------
D
F
A
G
-----------------
S
E
--------
A
T
L
K
T
G
Q
H
L
L
Q
Q
G
L
---
N
V
-
F
V
I
Q
L
P
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
65.52
21%
-70
- C3 -
3VDP
2
RECR_CALS4
A:
[94-210]
-----
S
T
I
C
V
V
S
-
H
P
M
D
-
V
V
A
M
E
K
V
K
-----
E
YK
G
----
V
Y
H
V
--
L
H
G
V
ISPIEGV
G
P
------------------------
E
--------------------------------------
D
I
--
R
I
---
K
E
L
---------
L
E
R
V
R
D
G
S
--
V
----
K
E
V
I
L
A
T
N
P
----------
D
I
E
G
-----------------
E
A
--------
T
A
M
Y
I
A
K
L
L
K
PF-----
G
V
-
K
V
T
R
I
A
H
--
G
--
I
P
-
V
G
------------
G
D
L
---
E
-
Y
T
D
V
V
T
L
S
K
A
L
E
G
R
R
---------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
63.20
24%
-87
- C3 -
2AU3
-
DNAG_AQUAE
A:
[244-325]
----
E
G
F
A
I
L
V
E
-
G
Y
F
D
-
L
L
R
L
F
S
E
G
-----
I
--
R
----
N
V
V
A
--
P
L
G
T
-------
A
L
------------------------
T
--------------------------------------
Q
N
--
Q
A
---
N
L
L
---------
S
K
F
-------
T
----
K
K
V
Y
I
L
Y
D
G
----------
D
D
A
G
-----------------
R
K
--------
A
M
K
S
A
I
P
L
L
L
S
A
G
V
---
E
V
-
Y
P
V
Y
L
P
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
58.65
20%
-60
- C3 -
2Q2E
-
TOP6A_METMA
A:
[195-275]
----
A
S
M
I
I
A
I
E
-
T
G
G
M
-
Y
A
R
L
M
E
N
G
FDEA
Y
N
--
A
----
I
L
V
H
--
L
K
G
Q
--------
P
------------------------
A
--------------------------------------
R
S
--
T
R
---
R
I
I
---------
K
R
M
---
N
E
EL
G
----
I
P
V
A
V
F
T
D
G
----------
D
P
W
S
-----------------
Y
R
--------
I
Y
A
S
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
55.90
19%
-51
- C3 -
1Q57
-
PRIM_BPT7
A:
[151-237]
-----
K
K
I
V
V
T
E
-
G
E
I
D
-
M
L
T
V
M
E
L
Q
D----
C
K
-
Y
----
P
V
V
S
--
L
G
H
G
--------
A
------------------------
S
--------------------------------------
A
A
K
K
T
C
---
A
A
N
Y
--------
E
Y
F
---
D
Q
--
F
----
E
Q
I
I
L
M
F
D
M
----------
D
E
A
G
-----------------
R
K
--------
A
V
E
E
A
A
Q
V
L
P
AG-----
K
V
-
R
V
A
V
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
54.42
27%
-57
- C3 -
1GKU
-
RGYR_ARCFU
B:
[611-675]
--------------------------------------------------------------------------------------------------------------------------
S
--
R
I
---
E
A
L
---------
R
K
L
---
A
H
D-
A
----
E
F
V
I
V
G
T
D
P
----------
D
T
E
G
-----------------
E
K
--------
I
A
W
D
L
K
N
L
L
S
-------
G
C
-----
G
A
V
--
K
--
R
----------------
A
E
F
---
H
-
E
V
T
R
R
A
I
L
E
A
L
E
S
L
R
D
--------------------------------------------------------------------------------------------------------------------------------
47
Fugue
54.05
14%
-28
- C2 -
2A9S
2
?
A:
[3-169]
-----------------------------------------
M
S
--
L
F
P
G
-------
D
I
------------------------
E
--------------------------------------
E
L
--
A
R
---
R
I
I
---------
T
D
F
---
T
P
--
L
----
G
L
M
V
S
T
A
E
S
-----------
C
T
G
-----------------
G
L
--------
I
A
G
A
L
T
E
-
I
A
-------
G
S
-
S
A
V
V
D
R
G
F
V
T
YT
N
D
A
K
R
----------
D
M
L
G
V
---
G
-
T
E
T
L
T
T
F
G
A
V
S
R
Q
T
A
L
Q
---------
M
A
H
-
G
A
L
Y
R
S
R
A
--
N
F
A
-----
V
A
--
V
T
G
I
A
G
P
G
G
G
S
--------
A
E
K
P
V
G
-
L
V
H
L
A
T
K
A
R
N
G
N
V
--------
L
H
H
E
M
R
Y
-
G
DIG
R
T
E
I
R
L
A
T
---
V
R
T
A
-
L
E
M
L
I
A
L
N
Q
A
G
------
39
HHSearch
53.85
19%
-44
- C3 -
1D3Y
1
TOP6A_METJA
A:
[122-205]
----
A
D
F
I
L
A
I
E
-
T
S
G
M
-
F
A
R
L
N
A
E
R
F
W
D
K
H
N
--
C
----
I
L
V
S
--
L
K
G
V
-------
P
-------------------------
A
--------------------------------------
R
A
--
T
R
---
R
F
I
---------
K
R
L
---
H
E
E
H
D
----
L
P
V
L
V
F
T
D
G
----------
D
P
Y
G
Y----------------
L
N
--------
I
Y
R
T
L
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
53.28
30%
-61
- C3 -
4EE1
3
DNAG_STAAU
A:
[151-208]
---
K
L
D
E
I
V
L
L
E
-
G
F
M
D
-
V
I
K
S
D
T
A
G
-----
L
--
K
----
N
V
V
A
--
T
M
G
T
-------
Q
L
------------------------
S
--------------------------------------
D
E
--
H
I
---
T
F
I
---------
R
-----
K
L
--
T
----
S
N
I
T
L
M
F
D
G
----------
D
F
A
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.58
30%
-54
- C3 -
4EDV
3
DNAG_STAAU
A:
[151-208]
---
K
L
D
E
I
V
L
L
E
-
G
F
M
D
-
V
I
K
S
D
T
A
G
-----
L
--
K
----
N
V
V
A
--
T
M
G
T
-------
Q
L
------------------------
S
--------------------------------------
D
E
--
H
I
---
T
F
I
---------
R
-----
K
L
--
T
----
S
N
I
T
L
M
F
D
G
----------
D
F
A
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
52.46
13%
-43
- C2 -
1F45
-
IL12A_HUMAN
B:
[20-197]
-------------------------------------------------------------------------------------------------------------------------
Q
N
--
L
L
---
R
A
V
---------
S
N
M
---
L
Q
--
K
----
A
R
Q
T
L
E
F
Y
P
----------------------------------------------
C
S
T
V
E
-------
A
C
-----
L
P
L
E
L
T
--
K
N
E
S
C
----------
T
S
F
-
I
---
T
-
N
G
S
S
F
M
M
A
L
C
L
S
S
I
Y
E
D
---------
L
K
M
-
Y
Q
V
E
-
F
K
T
M
N
A
K
L
-----
L
M
--
D
P
K
R
Q
I
F
L
D
Q
N
--------
M
L
A
V
I
D
E
L
M
Q
A
L
Y
K
--
T
K
I
K
--------
L
C
I
L
L
H
A
-
F
-----
R
I
R
A
V
T
---
I
D
R
V
-
M
S
Y
L
N
A
S
----------
7
PsiBlast_PDB
52.41
30%
-51
- C3 -
4EDT
2
DNAG_STAAU
A:
[151-208]
---
K
L
D
E
I
V
L
L
E
-
G
F
M
D
-
V
I
K
S
D
T
A
G
-----
L
--
K
----
N
V
V
A
--
T
M
G
T
-------
Q
L
------------------------
S
--------------------------------------
D
E
--
H
I
---
T
F
I
---------
R
-----
K
L
--
T
----
S
N
I
T
L
M
F
D
G
----------
D
F
A
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------