@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0388: (2015-12-01 )
MIHVAIYMLLLCMSAMLYRIAKLSDIYNKALAFNHFSTQVILLITAVSIILDSFFLVDIALLYASVSFISTIALMRLMLL
Atome Classification :
(18 SA)
------------------------------------------------------------------------------.......-..10.-----..-.....20-........-30-----.-...-....40-.......----.50..-.....-.60--------.-------------.....-...70-------........80---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------M
I
H
V
A
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M
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C
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M
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-
A
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-
A
L-----A-FNH-FS
T
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A
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S
----
I
I
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-
F
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---------
L
-------------
L
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A
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S
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T
-------
I
A
L
M
R
L
MLL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
93.40
18%
-223
- C6 -
2P5T
-
PEZA_STRPN
A:
[67-158]
------------------------------------------------------------------------------
L
N
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E
D
Y
-
E
L
T
L
K
-----
I
E
-
I
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G
A
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N
L
L
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L
Y
R
-
Y
Q
DSQGI
S
-
I
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N
P
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I
-
L
M
S
D
D
L
S
----
D
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N
I
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E
T
F
D
---------
E
-------------
I
E
R
Y
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-
G
Y
L
D
G
-------
I
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R
M
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S
E
KRMVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
84.41
15%
-220
- C6 -
2F6M
2
VPS28_YEAST
B:
[3-109]
-----------------------------------------------------------MD
I
S
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E
V
P
LFDNSIT
S
K
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K
E
V
I
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E
T
L
S
E
-----
I
Y
-
S
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-
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A
Y
L
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I
-----
D
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D
T
Q
-
Y
T
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-
K
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L
K
Q
F
K
----
V
Y
L
N
S
-
Q
N
K
E
E
-
I
N
---------
K
-------------
H
F
Q
S
I
-
E
A
F
A
D
T
Y
NITA
S
N
A
I
T
R
L
E
R
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
75.68
19%
-159
- C6 -
1JFA
2
TRI5_FUSSP
A:
[1-354]
----------------------------------------------------------------------MENFP
T
E
Y
F
L
N
T
T
V
R
-
L
L
E
Y
I
R
Y
R
D
S
N
Y
-
T
R
E
E
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A
Y
N
K
-
A
A
-----
H
H
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A
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R
Q
Q
Q
L
-
L
K
V
D
--
P
----
K
R
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A
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S
L
Q
T
I
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G
---------
M
-------------
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Y
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A
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K
-------
E
C
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A
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H
Y
T
Y
T
L
V
L
D
D
SKDDPYPTMVN
Y
F
D
D
L
Q
A
GREQAH
P
W
W
A
L
V
N
E
H
F
P
N
V
L
R
H
F
G
P
F
C
S
L
N
L
I
R
S
T
L
D
F
F
E
G
C
W
I
E
Q
Y
NFGGFPGSHD
Y
P
Q
F
L
R
R
M
N
GL
G
H
C
V
G
A
S
LWPKEQFNERSL
F
L
E
I
T
S
A
I
A
Q
M
E
N
W
M
V
W
V
N
D
L
M
S
FYKEFDDERDQIS
L
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N
Y
V
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S
DEIS
L
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A
L
E
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T
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A
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FSDKD
P
Q
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F
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G
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T
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C
DRRYRL
S
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K
EEKT
E
D
A
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C
K
F
Y
E
Q
A
A
N
V
GAVSPSEWAYPP
V
A
Q
L
A
N
V
11
Fugue
73.32
18%
-163
- C6 -
1L0V
4
FRDD_ECOLI
D:
[1-119]
-----------------------------------------------------MINPNPKRSDE
P
V
F
W
G
L
F
G
A
G
G
M
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S
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M
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G
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-----
A
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----
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M
H
-
H
A
---------
M
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P
AGKW
V
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G
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A
-
A
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V
-------
V
T
L
I
G
V
V
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
63.85
13%
-239
- C6 -
3HKM
-
EXOS5_ORYSJ
A:
[5-231]
RADGRNPNQLR
P
F
S
C
T
RNPLDRAH
G
S
A
RWAQGDT
I
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A
A
V
Y
G
PKPGTRKGENPE
K
A
S
I
E
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K
P
MTGQIG
K
Q
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K
E
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-
S
I
C
L
---------------------------------
L
-
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T
T
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S
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NDGS
L
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P
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A
-
I
N
A
C
C
-
A
A
---------
L
-------------
V
F
A
G
I
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P
L
K
H
L
-------
A
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A
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G
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G
V
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EDG
E
V
I
L
DTN
K
A
E
E
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Q
LKSFAH
L
V
F
P
NLI
T
S
I
T
H
G
VMS
E
E
D
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F
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G
L
A
A
S
S
R
I
S
D
F
M
R
TTLQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
62.39
19%
-199
- C5 -
4V2B
-
?
A:
[47-156]
---------------------------------------------------------------APGTLPHFIEEP
E
D
A
Y
I
I
K
S
N
P
-
I
A
L
R
C
-----
K
A
-
R
P
A
M
Q
I
F
F
K
C
N
G
E
W
V
H
-
Q
N
-----
E
---
H
-
V
S
E
E
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E
V
F
----
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R
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E
D
-
F
H
GPE
D
Y
W
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V
-------------
A
W
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L
G
T
S
K
S
R
-------
K
A
S
V
R
I
A
Y
L
R---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
46.95
20%
-62
- C6 -
1JB3
-
AGRIN_CHICK
A:
[39-58]
---------------------------------------------------------------------------------------------------
V
R
V
W
R
Y
L
-
K
G
K
D
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T
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-
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I
-----
L
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L
D
G
-
G
N
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F
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L
----
I
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Q
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T
R
---------
I
-------------
F
F
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P
-
A
P
Q
Y
M
-------
W
P
A
H
R
N
E
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.68
23%
-40
- C6 -
2HI2
-
FMM1_NEIGO
A:
[3-24]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
E
-
L
M
---------
I
-------------
V
I
A
I
V
-
G
I
L
A
A
-------
V
A
L
P
A
Y
Q
D
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
44.42
34%
8
* C6 *
3TJ6
-
?
B:
[1-23]
-------------------------------------------------------------------------------------------------------------
D
D
I
Y
N
K
-
A
R
-----
E
-
V
I
N
-
A
V
N
P
V
I
-
E
A
L
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
42.37
18%
-52
- C6 -
1OQW
-
FMPA_PSEAI
A:
[3-24]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
E
-
L
M
---------
I
-------------
V
V
A
I
I
-
G
I
L
A
A
-------
I
A
I
P
Q
Y
Q
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.63
9%
-70
- C3 -
2DAE
-
TAB2_HUMAN
A:
[20-30]
-----------------------------------------------------------------------------------------------------------
K
F
P
E
V
P
E
V
-
V
V
-----
S
-
R
C
M
-
L
Q
N
N
N
N
-
L
D
A
C
C
A
V
----
L
S
Q
E
S
-
T
R
Y
L
Y
-
G
E
---------
G
-------------
D
L
N
F
S
-
D
D
S
G
I
-------
S
G
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
41.53
7%
-94
- C6 -
1ZX3
-
?
A:
[10-95]
------------------------------------------------------------------------------
E
V
Q
Q
P
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P
M
R
K
N
W
I
M
----
E
N
M
D
S
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V
I
Y
L
-
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A
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----
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K
D
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W
G
--
K
-
E
K
---------
L
-------------
E
E
T
N
T
-
E
Y
Q
N
Q
-------
Q
R
K
L
R
K
T
Y
I
E
Y
Y
DR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
39.35
23%
-24
- C6 -
1WAZ
-
?
A:
[41-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
L
D
-
Y
V
---------
L
-------------
L
P
A
L
A
-
I
F
I
G
L
-------
T
I
Y
A
I
Q
R
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.41
4%
-108
- C6 -
1KF6
-
FRDC_ECOLI
C:
[35-61]
-----------------------------------------------------------------------------------
A
V
-
W
F
S
I
E
-----
L
I
-
F
G
L
F
A
L
K
-
N
G
P
E
A
W
A
G
-
F
V
-----
D
-
F
L
Q
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N
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I
-
I
N
L
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T
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A
----
A
A
L
L
H
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T
W
F
-
E
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---------
A
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P
K
A
A
N
-
I
I
V
K
D
-------
E
K
M
G
P
E
P
I
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
33.29
18%
25
- C6 -
1ZTD
-
?
A:
[13-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
I
-
N
F
L
Y
S
-------
L
A
L
T
E
F
L
G
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
23.60
8%
108
- C4 -
3AJF
-
VSR_RHBVC
A:
[39-50]
-----------------------------------------------------------------------------------------------------
F
L
Q
M
I
-
R
K
P
D
D
P
E
N
-
L
S
-----
V
-
F
L
K
-
S
A
I
W
M
L
-
S
H
K
R
D
L
P
----
G
H
Y
R
L
-
P
L
T
C
L
-
V
S
---------
T
-------------
Y
S
E
Y
F
-
V
E
L
K
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.30
9%
242
- C2 -
3V46
-
CDC73_YEAST
A:
[304-314]
------------------------------------------------------------------------------------------------------------
K
P
E
Y
W
D
R
-
V
V
-----
A
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
17.13
20%
58
- C1 -
2DK3
-
A:
[19-28]
-----------------------------------------------------------------------------------------------------
G
A
R
V
I
-
R
G
L
D
W
K
W
R
-
D
Q
-----
D
-
G
S
P
-
Q
G
E
G
T
V
-
T
G
E
L
H
N
G
----
W
I
D
V
T
-
W
D
A
G
G
-
S
N
---------
S
-------------
Y
R
M
G
A
-
E
G
K
F
D
-------
L
K
L
A
P
G
Y
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------