@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0505: (2015-12-02 )
MKILISLLFILIFYSSANAFTLDDKLRDKNMEKRATNLFEMIKCPICSGESLSESGSQVAYNMRKMIREKISDGYTDEQITSELRNSYGDSIIIVPPVKFSTYILWLIPLVIPLIGCFLIRNIIK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..-......20.-.......30........40..--..--....--50...------------------.....60........70....--....80..-.--.....90.......--.100.-......110.......120...------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
I
L
I
S
L
L
F
I
L
I
F
-YSSAN
A
F
TL-D
D
K
LRD
K
N
M
E
K
R
A
T
N
L
F
E
M
I
K--CP--ICSG--ESLSE------------------SG
S
Q
V
A
Y
N
M
R
K
M
I
R
E
K
ISDGY--
T
D
E
Q
I
T
S
E
-
L
--
R
N
SYG
D
S
I
I
I
VPPV--K
F
S
T
Y
-
I
L
W
L
I
P
L
V
I
P
L
I
G
C
F
L
I
R
N
IIK------------------
14
HHSearch
87.65
26%
-100
- C3 -
2HL7
2
CCMH_PSEAE
A:
[8-82]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
E
F
A
S
D
A
E
R
E
R
F
R
N
L
T
Q
E
L
R
--
C
P
--
K
C
Q
N
--
Q
D
I
A
D
------------------
S
N
A
P
I
A
A
D
L
R
K
Q
I
Y
G
Q
L
Q
Q
G
K
--
S
D
G
E
I
V
D
Y
-
M
--
V
A
R
Y
G
D
F
V
R
Y
K
P
P
-------------------------------------------------
1
PsiBlast_PDB
86.06
30%
-124
- C3 -
2HL7
2
CCMH_PSEAE
A:
[18-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
F
R
N
L
T
Q
E
L
R
--
C
P
--
K
C
Q
N
--
Q
D
I
A
D
------------------
S
N
A
P
I
A
A
D
L
R
K
Q
I
Y
G
Q
L
Q
Q
G
K
--
S
D
G
E
I
V
D
Y
-
M
--
V
A
R
Y
G
D
F
V
R
Y
K
P
P
-------------------------------------------------
35
Fugue
83.51
23%
-95
- C3 -
2HL7
2
CCMH_PSEAE
A:
[1-82]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
M
A
I
D
-
T
Y
E
F
A
S
D
A
E
R
E
R
F
R
N
L
T
Q
E
L
R
--
C
P
--
K
C
Q
N
--
Q
D
I
A
D
------------------
S
N
A
P
I
A
A
D
L
R
K
Q
I
Y
G
Q
L
Q
Q
G
K
--
S
D
G
E
I
V
D
Y
-
M
--
V
A
R
Y
G
D
F
V
R
Y
K
P
P
-------------------------------------------------
2
PsiBlast_PDB
80.93
25%
-84
- C3 -
2KW0
-
?
A:
[24-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
K
D
E
A
Q
E
Q
Q
F
R
Q
L
T
E
E
L
R
--
C
P
--
K
C
Q
N
--
N
S
I
A
D
------------------
S
N
S
M
I
A
T
D
L
R
Q
K
V
Y
E
L
M
Q
E
G
K
--
S
K
K
E
I
V
D
Y
-
M
--
V
A
R
Y
G
N
F
V
T
Y
D
P
P
L
--
T
P
--------------------------------------------
13
HHSearch
79.52
23%
-73
- C3 -
2KW0
-
?
A:
[21-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
V
L
Q
F
K
D
E
A
Q
E
Q
Q
F
R
Q
L
T
E
E
L
R
--
C
P
--
K
C
Q
N
--
N
S
I
A
D
------------------
S
N
S
M
I
A
T
D
L
R
Q
K
V
Y
E
L
M
Q
E
G
K
--
S
K
K
E
I
V
D
Y
-
M
--
V
A
R
Y
G
N
F
V
T
Y
D
P
P
L
--
T
P
--------------------------------------------
6
PsiBlast_PDB
68.60
26%
-27
- C3 -
3I61
1
MS116_YEAST
A:
[273-355]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
8
PsiBlast_PDB
68.36
26%
-33
- C3 -
3SQW
1
MS116_YEAST
A:
[222-304]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
9
PsiBlast_PDB
67.31
26%
-28
- C3 -
3SQX
1
MS116_YEAST
A:
[222-304]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
7
PsiBlast_PDB
67.17
26%
-24
- C3 -
3I62
1
MS116_YEAST
A:
[273-355]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
4
PsiBlast_PDB
66.66
26%
-29
- C3 -
3I5X
1
MS116_YEAST
A:
[273-355]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
5
PsiBlast_PDB
66.36
26%
-24
- C3 -
3I5Y
1
MS116_YEAST
A:
[273-355]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-
D
D
K
V
-----
Q
K
L
A
N
N
I
M
N
K
K
E
--
C
L
--
F
L
D
T
--
V
D
K
N
E
------------------
P
E
A
H
E
R
I
D
Q
S
V
V
I
S
E
K
F
A
N
S
I
F
A
A
V
E
H
I
K
K
Q
-
I
K
E
R
D
S
N
Y
K
A
I
I
F
A
P
T
V
--
K
F
T
S
F
-
L
C
S
I
L
K
N
E
F
K
K
D
L
P
I
L
E
F
H
G
K
I
------------------
31
HHSearch
62.99
21%
-48
- C3 -
2ASH
5
TGT_THEMA
A:
[305-374]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
V
D
E
R
C
G
--
C
Y
--
T
C
K
N
--
F
T
R
S
Y
I
H
H
L
F
D
R
GEV
L
G
Q
I
L
L
T
I
H
N
I
N
F
M
I
S
L
M
K
E
V
R
R
S
I
E
S
G
---
T
F
K
E
L
K
S
K
-
V
--
V
E
V
Y
S
---------------------------------------------------------
11
PsiBlast_PDB
62.94
28%
-52
- C3 -
4BQO
10
?
A:
[11-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
S
C
Q
A
P
A
L
-
A
K
M
L
N
S
C
P
T
F
A
R
D
W
E
L
V
E
M
E
P
--
C
F
--
V
A
S
E
--
E
Q
I
D
R
------------------
H
L
A
E
T
I
P
K
L
D
L
F
L
Y
Q
P
V
S
E
G
Y
--
R
G
E
K
Y
S
S
V
F
L
--
R
N
S
M
P
P
G
G
N
A
L
S
V
Q
--
Y
M
H
W
E
-
G
Y
H
P
T
V
N
S
P
Y
G
L
P
P
H
P
E
G
Y
V
D
A
------------------
10
PsiBlast_PDB
61.19
28%
-45
- C3 -
4BQN
3
?
A:
[11-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
S
C
Q
A
P
A
L
-
A
K
M
L
N
S
C
P
T
F
A
R
D
W
E
L
V
E
M
E
P
--
C
F
--
V
A
S
E
--
E
Q
I
D
R
------------------
H
L
A
E
T
I
P
K
L
D
L
F
L
Y
Q
P
V
S
E
G
Y
--
R
G
E
K
Y
S
S
V
F
L
--
R
N
S
M
P
P
G
G
N
A
L
S
V
Q
--
Y
M
H
W
E
-
G
Y
H
P
T
V
N
S
P
Y
G
L
P
P
H
P
E
G
Y
V
D
A
------------------
39
Fugue
57.85
18%
-46
- C3 -
3RPF
1
?
C:
[3-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
V
R
F
-
F
G
P
I
K
E
E
N
F
F
I
K
A
N
D
-
L
K
E
L
R
--
A
I
--
L
Q
E
K
--
E
G
L
K
E
------------------
W
L
G
V
C
A
I
A
L
N
D
H
L
I
D
N
L
N
T
P
L
--
K
D
--------------
G
D
V
I
S
L
L
P
P
V
--
C
G
G
-------------------------------------------
38
Fugue
55.55
24%
-14
- C3 -
2ES9
-
?
A:
[11-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
I
E
K
A
L
D
F
I
G
G
M
N
T
S
A
S
V
P
H
S
M
D
--------
E
S
T
A
K
G
I
L
K
Y
L
H
D
L
G
V
--
P
V
S
P
--
E
V
V
V
A
------------------
R
G
E
Q
E
G
W
N
----------
P
E
F
--
T
K
K
V
A
G
W
A
-
E
--
K
V
A
S
G
N
R
I
L
I
K
N
P
E
--
Y
F
S
T
Y
M
Q
E
Q
L
K
E
L
V
L
E
H
-----------------------------
36
Fugue
54.28
5%
-121
- C3 -
1S7I
-
?
A:
[1-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
F
Q
G
N
M
K
Y
L
C
L
I
-
Y
F
D
E
A
K
L
A
A
-
V
P
A
E
E
L
A
A
I
V
D
E
C
M
T
Y
S
D
Q
L
G
--
K
A
GH
Y
I
A
S
--
H
A
L
Q
S
------------------
V
Q
T
A
T
T
L
R
H
Q
G
G
R
L
A
M
T
D
G
P
F
--
A
E
T
K
--------
E
Q
L
G
G
F
Y
L
I
E
A
R
D
----
L
N
Q
A
-
L
Q
I
A
A
K
I
P
P
G
R
L
G
C
V
E
V
R
P
V
K
E
W
E
G
S--------------
43
Fugue
53.38
12%
-76
- C2 -
1TVL
-
MOXC_BACSU
A:
[3-432]
RA
D
F
I
Q
F
G
A
M
I
H
G
VGGTTDGWRHPDVDPSASTN
I
E
F
Y
M
K
K
A
Q
T
A
E
K
G
LFS
F
I
F
I
A
D
G
LFISEKSIPHFL
N
R
F
E
P
I
T
I
L
S
A
L
A
S
V
T
KN
I
G
L
V
G
T
F
S
TSFTE
P
F
T
I
S
R
Q
L
M
S
L
D
H
I
S
GGR
A
G
W
NLVTSPQ
E
G
A
A
R
N
H
SKSNLPE
H
T
E
R
Y
E
I
A
Q
E
H
L
D
V
V
R
G
L
W
N
SWEHDAFIHNKKTGQFFDQAKLHRLNHKGKYFQVEGPLNIGRSKQG
E
P
V
V
F
Q
A
G
SS
E
T
G
R
Q
F
A
A
K
NAD
A
I
F
T
H
SNS
L
E
E
T
K
A
F
Y
A
D
V
K
S
R
A
A
D
E
GRDPSS
V
R
I
F
P
G
I
S
P
I
V
A
--
D
T
E
E
E
A
E
K
K
-
Y
R
E
F
A
E
L
I
P
I
E
N
A
V
T
E
A
K
A
----------
R
N
--
L
T
L
R
E
------------------
V
A
Q
E
M
A
F
P
R
T
L
F
I
G
---
T
P
E
R
--
V
A
S
L
I
E
T
W
-
F
--
N
A
E
A
A
D
G
F
I
V
G
S
D
I
PG
T
L
D
A
F
-
V
E
K
V
I
P
I
L
Q
E
-------
R
G
L
Y
R
QDYRGGT
L
R
E
N
L
G
L
G
I
P
Q
12
PsiBlast_PDB
43.96
30%
-60
- C3 -
4GRI
-
SYE_BORBU
A:
[406-456]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
Y
E
D
I
K
S
W
N
L
-
D
E
F
-------
K
E
V
C
S
I
L
E
L
I
K
---
P
--
I
L
E
G
FE
K
R
S
S
E
------------------
E
N
D
K
I
F
Y
D
F
A
E
S
N
L
G
E
I
L
L
P
I
--
R
I
A
A
L
G
S
K
-
V
--
S
P
P
L
F
D
S
L
K
L
I
G
K
S
--
K
V
F
E
R
-
I
K
L
A
Q
E
F
L
R
I
N
-----------------------------
23
HHSearch
43.29
23%
-42
- C3 -
2V75
-
NAB2_YEAST
A:
[28-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
Y
V
A
E
Y
I
V
L
L
I
V
N
G
G
--
T
V
E
S
V
V
D
E
-
L
--
A
S
L
F
D
S
V
S
R
D
T
L
A
N
--
V
V
Q
T
A
-
F
F
A
L
E
A
L
Q
Q
G
E
S
A
E
N
I
V
S
K
I
R
M
------------------