@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0156: (2016-03-12 )
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
Atome Classification :
(20 SA)
-------------------------------------------........----.-----10.-----------.....-..-------20....-------....30....-....----40..--......50.....-...60........------.70...-------..-...80..----......90........-100....------------...110.......120---------........130......-.--140-------------.......--.150..-..----...160........170.......180...--------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------M
K
R
L
F
D
V
V
----
S
-----
S
I
Y
-----------
G
L
V
V
L
-
S
P
-------
I
L
L
I
T
A
-------
L
L
I
KMESPGP-
A
I
FK----QKRP--TIN
N
E
L
F
N
I
Y
K
F
R
-
S
MKI-DTP
N
V
A
T
D
------
L
MDST
S
-------
Y
I
-
T
KT
G
K
V
I
----RKT
S
I
D
E
L
P
Q
L
L
N
V
L
K-GE
M
S
IVG------------PR
P
A
L
Y
N
Q
Y
E
L
I
E
K
R
----------TKAN
V
H
TIRP
G
V
T
G
L
A
Q
-
V
--MG--------------RDDITDD--
Q
K
V
A
Y
D
-
H
Y
----
Y
L
T
H
Q
-
S
M
M
L
D
M
Y
I
I
Y
K
T
I
K
N
I
V
TSEGVHH--------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
85.49
20%
-58
* C3 *
4CIJ
-
?
A:
[3-269]
---------------MS
G
L
K
P
C
V
D
W
L
Q
V
T
F
K
T
GQDSV
K
K
C
V
E
K
L
E
K
V
F
E
I
L
GLNE
A
-----
E
F
L
P
L
KNGKYGYK
Q
G
V
A
F
Q
G
N
P
-------
V
L
A
V
Y
Y
DGADDM
G
I
H
V
E
M
T
G
Q
G
C
-
R
L
F
E
----
L
H
T
S
--
I
N
W
Y
E
L
F
Y
R
L
V
Y
E
Y
E
V
N
I
-
T
R
L
D
V
A
V
D
D
FKGYF
K
I
N
T
L
V
-------
K
K
-
L
K
D
D
E
V
T
SRFK
K
A
R
H
I
E
N
I
V
I
E
G
G
E
T
I
-
G
H
T
L
Y
F
G
------------
A
-
P
S
S
D
I
Q
V
R
F
Y
E
K
N
----------
V
Q
M
G
---
M
D
I
D
V
W
N
R
T
E
-
I
--
Q
L
--------------
R
D
D
R
A
H
V
V
A
Q
I
I
A
D
D
-
V
L
----
P
L
G
E
I
V
A
G
L
L
R
N
Y
I
Q
F
R
T
R
K
A
--
T
D
K
N
K
K
R
WPLA
R
F
W
L
N
F
L
G
D
V
QPLRIAKQM---------------------------------------------------------------------------------------------------------------------------------
15
Fugue
72.56
15%
-65
- C4 -
1J54
6
DPO3E_ECOLI
A:
[7-180]
-------------------------------------------
R
Q
I
V
L
D
T
E
----
T
-----
T
-------------
G
M
N
Q
I
-
G
A
HYEGHKI
I
E
I
G
A
V
-------
E
V
V
N
R
R
L
T
G
N
-
N
F
H
V
----
Y
L
K
P
D
R
L
V
D
P
E
A
F
G
V
H
G
I
A
-
D
E
F
L
L
D
K
P
T
F
A
E
V
------
A
D
E
F
M
D
-------
Y
I
-
R
G
A
E
L
V
I
----
H
N
A
A
F
D
-----
I
G
F
M
D
-
Y
E
F
S
L
L
K
------------
R
D
I
P
K
T
N
T
F
C
K
V
T
D
S
----------
L
A
V
A
R
K
M
F
P
G
K
R
N
S
L
D
A
-
L
--
C
A
--------------
R
Y
E
I
D
N
S
--
K
R
-------------
T
L
H
-
G
A
L
L
D
A
Q
I
L
A
E
V
Y
L
A
M
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
72.15
13%
-49
- C5 -
1IO2
-
RNH2_THEKO
A:
[1-213]
------------------------------------------M
K
I
A
G
I
D
E
A
GR--
G
-----
P
V
I
-----------
G
P
M
V
I
-
A
A
-------
V
V
V
D
E
N
-------
S
L
P
K
L
E
E
L
K
V
-
R
D
S
K
----
K
L
T
P
--
K
R
R
E
K
L
F
N
E
I
L
G
V
-
L
D
D
Y
-
V
I
L
E
L
P
P
D
------
V
I
G
S
R
---------
E
-
G
T
L
N
E
F
E
----
V
E
N
F
A
K
A
L
N
S
L
--
K
V
K
P
D
V
I
Y
A
D
A
------------
A
D
V
D
E
E
R
F
A
R
E
L
G
E
R
LN
F
E
A
E
V
V
A
K
H
K
A
D
D
I
F
P
V
V
S
A
A
S
I
L
A
-
K
--
V
T
--------------
R
D
R
A
V
E
K
--
L
K
E
E
Y
G
-
E
I
----
G
S
G
Y
P
-
S
D
P
R
T
R
A
F
L
E
N
Y
Y
R
E
H
G
E
F
P
P
I
V
R
KGWK
T
L
K
K
I
A
E
K
V
E
S
E
KK--------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
59.23
29%
10
- C6 -
4H4K
-
CMR3_PYRFU
A:
[231-286]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
-------
T
I
-
G
K
V
G
E
I
V
----
Q
-----
E
L
E
K
R
L
N
A
K
I
-
D
D
Y
L
L
V
S
------------
S
R
P
T
A
I
S
G
W
D
M
H
E
K
K
----------
P
K
G
T
K
F
A
I
P
P
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
57.86
15%
-71
- C4 -
4OCV
6
?
A:
[24-378]
T
N
E
A
L
F
D
V
A
S
H
FALEGTVD
S
I
E
P
Y
G
DGH
I
N
T
T
Y
L
V
T
T
D
G
P
R
Y
I
L
Q
R
M
N
T
G
I
----
F
-----
P
-
D
-----------
T
V
N
L
M
-
R
N
-------
V
E
L
V
T
S
-------
T
L
K
A
Q
G
K
E
T
L
-
D
I
V
R
T
TSG
D
T
W
A
--
E
I
D
G
G
A
W
R
V
Y
K
F
I
-
E
H
T
M
-
S
Y
N
L
V
P
N
---------------------------
P
D
V
----
F
R
E
A
G
R
A
F
G
D
F
Q
N
F
L
S
-
G
-----------------------
F
D
A
N
Q
L
T
E
------------
T
I
A
H
F
H
D
T
P
H
R
F
E
D
F
K
K
-
A
--
L
A
--------------
A
D
E
L
G
R
A
--
A
G
C
G
P
E
I
E
F
----
Y
L
S
H
A
-
D
Q
Y
---
A
V
V
M
D
G
L
R
D
G
S
I
P
L
R
V
T
H
NDTKLNNILMDATTGKARAIIDLDTIMPGS
M
L
F
D
F
G
D
S
I
R
F
GASTALEDERDLDK
V
H
F
S
T
E
L
F
R
A
Y
T
E
G
F
V
G
E
L
R
DSIT
A
R
E
A
E
L
L
P
F
S
G
N
L
L
T
M
E
C
G
M
R
F
L
A
D
Y
L
E
GDVYFATKYPE
H
N
L
V
R
S
R
T
Q
I
K
L
V
R
E
M
E
Q
R
A
D
E
T
R
A
I
V
A
D
V
M
E
T
T
6
PsiBlast_PDB
56.87
29%
-1
- C6 -
3X1L
-
CMR3_PYRFU
B:
[231-286]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
-------
T
I
-
G
K
V
G
E
I
V
----
Q
-----
E
L
E
K
R
L
N
A
K
I
-
D
D
Y
L
L
V
S
------------
S
R
P
T
A
I
S
G
W
D
M
H
E
K
K
----------
P
K
G
T
K
F
A
I
P
P
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.83
29%
7
- C6 -
3W2W
2
CMR3_PYRFU
B:
[231-286]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
-------
T
I
-
G
K
V
G
E
I
V
----
Q
-----
E
L
E
K
R
L
N
A
K
I
-
D
D
Y
L
L
V
S
------------
S
R
P
T
A
I
S
G
W
D
M
H
E
K
K
----------
P
K
G
T
K
F
A
I
P
P
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.55
29%
-2
- C6 -
3W2V
-
CMR3_PYRFU
B:
[231-286]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
P
-------
T
I
-
G
K
V
G
E
I
V
----
Q
-----
E
L
E
K
R
L
N
A
K
I
-
D
D
Y
L
L
V
S
------------
S
R
P
T
A
I
S
G
W
D
M
H
E
K
K
----------
P
K
G
T
K
F
A
I
P
P
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
45.23
9%
-17
* C5 *
2IMH
-
?
A:
[0-229]
--------------------------------------------
S
L
T
F
S
I
L
----
A
H
DPET
G
A
I
-----------
G
G
A
A
A
-
T
G
-------
S
L
C
V
G
G
-------
W
V
L
R
G
D
L
N
A
G
M
S
A
S
Q
----
G
A
A
P
--
S
T
F
W
G
E
E
V
L
Q
H
L
R
-
D
-
G
S
-
H
P
E
D
A
V
N
H
------
V
T
S
Q
D
S
GRAY
R
Q
L
A
A
M
D
L
L
G
N
A
A
----
A
F
T
G
S
E
N
Q
D
I
K
G
S
V
T
F
-
A
S
G
I
A
S
G
N
MLGDNS
V
L
G
A
M
T
E
A
F
V
A
S
D
L
T
F
E
R
R
L
----------
L
A
A
L
I
A
A
E
G
A
G
G
L
L
S
A
A
M
L
--
V
L
H
PDRPPVTLRIDYH
P
D
N
P
I
G
A
--
L
E
Q
L
Y
Q
-
K
A
----
T
T
G
D
Y
-
A
D
W
A
R
Q
V
P
V
L
S
D
K
E
R
I
L
D
E
G
H
H
H
H
HH------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.35
40%
20
- C6 -
4EGE
5
?
A:
[252-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
G
D
------------
P
S
P
D
V
A
Q
Q
Y
S
A
L
Q
R
A
----------
Q
R
A
A
V
D
A
V
R
P
G
V
T
A
-
A
Q
-
V
D
A
A
A
--------------
R
D
V
L
A
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
42.18
18%
25
- C4 -
4FAS
-
?
D:
[7-55]
--------------------------------------------------------------------------------------------------------------------------
S
L
A
P
--
I
S
A
K
D
M
L
D
Y
L
A
C
K
-
D
K
K
-------
P
T
D
------
V
V
K
S
H
T
-------
E
V
-
E
N
-
G
K
I
V
----
R
V
K
C
G
D
I
V
A
L
V
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
39.62
17%
45
- C3 -
1AFP
-
AFP_ASPGI
A:
[1-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
Y
N
G
K
C
Y
K
K
----------
D
N
I
C
K
Y
K
A
Q
S
G
K
T
A
I
C
K
-
C
--
Y
V
--------------
K
K
C
P
R
D
G
--
A
K
C
E
F
D
-
S
Y
KGKC
Y
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
36.98
36%
67
- C6 -
3FOK
-
?
A:
[54-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-
G
A
L
A
V
G
D
------------
N
E
T
A
M
A
N
R
Y
E
L
L
E
R
M
----------
A
---
I
A
L
S
R
P
G
V
D
G
----
V
--
L
G
--------------
T
P
D
I
I
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
35.97
27%
238
- C6 -
3NWR
-
?
A:
[105-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
L
P
T
L
A
A
T
V
A
-
G
N
L
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
33.95
35%
158
* C6 *
2OEM
1
MTNW_GEOKA
A:
[86-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
L
P
A
L
L
V
T
T
F
-
G
K
L
S
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.34
56%
152
- C6 -
3QFW
-
?
A:
[78-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
G
Q
L
L
N
M
L
F
-
G
N
S
S
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
30.45
40%
156
* C4 *
1PLP
-
?
?:
[1-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
K
V
Q
-------
Y
L
-
T
R
S
A
--
I
----
R
R
A
S
T
I
E
M
P
Q
Q
A
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
28.09
29%
153
- C6 -
3FK4
-
MTNW_BACCR
A:
[87-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
L
P
A
I
L
T
T
T
F
-
G
K
L
S
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
27.25
29%
142
- C6 -
2ZVI
-
MTNW_BACSU
A:
[89-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
I
P
A
L
L
T
T
V
F
-
G
K
L
S
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.90
60%
453
- C2 -
2E6X
-
?
A:
[39-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
R
E
L
P
R
L
L
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------