@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0586: (2015-12-16 )
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFAQIIKNFQENDIKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMASFGYRNQEITPKTRWKTEVIYEVIE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60......-----.-.-70--------------------------....----....80.......-.90.-..-.....100-..---.....----.----110...------------....120.-.....-.130........140.......150.......160....--...170..--.....180..-.-....190......-----.200--.-----........210.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
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ATKKYDPNRRI
S
E
K
D
W
E
V
L
V
E
V
G
RLAPSSIGL
E
P
W
K
M
L
L
LK
N
E
R
M
K
E
DLKPMA-----W-G-GL--------------------------SSLE----GA
S
H
F
V
I
Y
L
ARKG-VTY
D
-
S
D
-
Y
V
K
K
V
M
H
--
E
V
---
K
KRDY----D----
T
H
S
R
F
A
------------
Q
I
I
K
N
FQE-ND
I
K
L-NSE-R
S
L
F
D
W
AS
K
Q
T
Y
I
Q
M
A
N
M
M
M
A
A
A
M
LGIDSCPIEGY--
D
Q
E
K
V
E
A
Y
--
L
E
EKGYL
N
T
A
-
E
-
F
G
V
S
V
M
A
SFGYRN-----QE----I-----TPKTR
W
K
T
E
V
I
Y
E
VIE
1
PsiBlast_PDB
95.34
90%
-113
- C4 -
2H0U
1
?
A:
[2-217]
-
D
R
E
Q
V
V
A
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Q
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Q
R
F
A
A
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Y
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P
N
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E
A
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E
V
G
R
L
A
P
S
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I
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L
E
P
W
K
M
L
L
L
K
N
---------------------------------------------------------
A
S
H
F
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I
Y
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A
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G
-
V
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Y
D
-
S
D
-
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K
K
R
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Y
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D
----
T
N
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A
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Q
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Q
E
-
N
D
M
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N
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--
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--
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E
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A
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G
Y
R
N
-----
Q
E
----
I
-----
T
P
K
T
R
W
K
T
E
V
I
Y
E
V
I
E
2
PsiBlast_PDB
78.51
37%
-108
- C4 -
2HAY
4
?
A:
[11-203]
----
Q
I
Q
Q
A
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-
E
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A
-----
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-
G
-
A
Q
--------------------------
Y
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E
----
T
A
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----
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--
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-
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G
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-----
R
D
----
P
-----
K
H
A
Q
V
R
K
P
K
E
E
V
M
S
V
V
34
HHSearch
70.99
35%
-85
- C4 -
2HAY
4
?
A:
[8-224]
-
I
H
H
Q
I
Q
Q
A
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H
F
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A
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-
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-----
W
-
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A
Q
Y
---------------------------
Q
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E
----
T
A
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I
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---
R
---
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----
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----
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------------
K
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E
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M
A
-
D
N
P
-
R
A
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Y
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A
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N
M
M
M
T
A
A
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G
I
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T
C
P
I
E
G
F
--
H
Y
D
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N
H
I
--
L
A
K
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V
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E
-
K
-
E
G
I
A
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M
L
S
L
G
Y
R
L
-----
R
D
----
P
K----
H
A
Q
V
R
K
P
K
E
E
V
M
S
V
V
K
27
HHSearch
60.85
15%
-77
- C4 -
3EO8
8
?
A:
[1-219]
--
G
M
E
L
Q
D
T
I
F
K
R
Q
S
V
R
K
F
K
N
-
Q
D
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E
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K
M
I
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A
A
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A
A
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N
I
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N
W
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F
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R
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L
M
E
K
I
A
D
V
I
-----
T
-
K
-
K
Q
Q
E
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E
M
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V
S
V
D
K
A
N
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K
N
FT
L
F
Y
L
----
K
A
P
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L
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L
V
F
T
K
V
Y
N
P
S
----
G
-
Y
Y
E
L
-------------------
E
----
L
----
I
------------
D
A
P
K
E
T
---------
I
D
K
-
L
F
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G
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A
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E
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T
S
Q
NY
A
A
D
E
I
E
A
V
--
L
E
A
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G
F
E
-
K
-
G
E
Y
F
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A
M
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A
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E
-----
D
N
----
L
-----
K
S
P
S
K
K
P
V
E
E
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C
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F
I
K
32
HHSearch
59.87
22%
-81
* C4 *
3BEM
5
MHQN_BACSU
A:
[13-217]
--
M
A
E
F
T
H
L
V
N
E
R
R
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Y
V
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L
K
Q
A
A
-----
N
-
G
-
Q
Y
---------------------------
K
V
V
----
S
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S
A
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L
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A
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--
L
----
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----
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H
M
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V
------------
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F
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E
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----------
G
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L
N
I
----
D
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D
-
Q
-
F
E
V
V
M
M
I
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I
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K
E
K
-----
T
E
----
S
RR---
P
R
G
Y
R
K
P
V
N
E
F
V
E
Y
M
-
37
HHSearch
59.44
24%
-70
- C4 -
1VFR
2
FRA1_ALIFS
A:
[2-217]
--
T
H
P
I
I
H
D
L
E
N
R
Y
T
S
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K
Y
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A
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ANMHQ
F
-
N
-
Q
P
---------------------------
H
I
K
----
A
C
S
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-
Y
D
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R
I
-
T
E
----
E
----
Q
K
E
A
A
F
------------
A
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F
K
F
-----
V
E
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N
C
D
E
N
-
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----
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-
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-
Y
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A
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A
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H
-----
P
S
----
E
DYNAS
L
P
K
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K
A
F
E
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V
I
T
I
L
-
22
HHSearch
58.84
24%
-78
- C4 -
3QDL
3
RDXA_HELPY
A:
[5-210]
-
D
Q
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K
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Q
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I
A
A
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-----
Y
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-
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E
---------------------------
M
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-------------------------------------------------------------------
M
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A
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A
-----
S
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R
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S
K
V
D
A
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-
41
Fugue
58.51
24%
-73
- C4 -
1VFR
2
FRA1_ALIFS
A:
[2-218]
--
T
H
P
I
I
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R
Y
T
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K
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ANMH-
Q
-
F
-
N
Q
--------------------------
P
H
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K
----
A
C
S
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I
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F
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---
L
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----
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E
------------
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K
-
G
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PSEDY
N
A
----
S
-----
L
P
K
S
R
K
A
F
E
D
V
I
T
I
L
-
19
PsiBlast_PDB
57.30
25%
-79
- C4 -
1ICV
4
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
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K
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K
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E
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A
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V
A
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A
-----
A
-
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-
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Y
--------------------------
V
F
N
E
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M
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H
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--
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--------
E
----
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----
A
D
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--
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K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
28
HHSearch
57.25
22%
-73
- C4 -
1ICR
4
NFSB_ECOLI
A:
[2-216]
----
D
I
I
S
V
A
L
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K
A
F
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A
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A
AGNYV
F
-
N
-
E
R
---------------------------
K
M
L
----
D
A
S
H
V
V
V
F
C
A
K
T
A
M
D
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V
-----
W
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--
Q
E
D
A
D
G
R
F
A
T
P
E
A
K
A
----
A
N
D
K
G
R
------------
K
F
F
A
D
M
------
H
R
-
K
D
L
-
H
D
D
A
E
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
--
F
G
L
----
K
-
E
K
G
-
Y
T
S
L
V
V
V
P
V
G
H
H
S
-----
V
E
----
D
FNAT-
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
14
PsiBlast_PDB
57.03
26%
-75
- C4 -
1OOQ
3
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
30
HHSearch
56.91
20%
-76
- C4 -
3GE6
2
?
A:
[6-212]
-
T
A
T
D
F
M
E
I
V
K
G
R
R
S
I
R
N
Y
D
T
N
V
K
I
S
K
E
E
M
T
Q
I
L
E
E
A
T
L
A
P
S
S
V
N
M
Q
P
W
R
F
L
V
I
D
S
E
E
G
K
A
T
L
A
P
L
A
K----
F
-
N
-
Q
V
---------------------------
Q
V
E
----
T
S
S
A
V
I
A
V
F
G
D
M
K
A
I
D
Q
L
-
E
N
-
I
Y
D
T
A
V
---
E
K
---
G
L
M
P
Q
----
E
----
V
R
D
R
Q
V
------------
P
A
I
Q
G
-----
M
Y
E
N
-
V
P
A
-
S
A
L
K
D
S
I
L
I
D
S
G
L
V
S
M
Q
L
M
L
V
A
R
A
H
G
Y
D
T
N
P
I
G
G
Y
--
E
K
D
Q
I
A
E
A
--
F
G
M
----
E
-
K
-
D
R
Y
V
P
V
M
L
L
S
I
G
K
A
V
-----
D
A
----
G
-----
Y
P
S
V
R
L
P
I
N
D
I
A
D
W
K
-
7
PsiBlast_PDB
56.73
27%
-57
- C4 -
3OF4
15
?
A:
[7-193]
--------
L
Q
Q
W
R
Y
A
T
A
D
F
S
-
G
A
H
I
T
D
D
V
L
D
K
L
L
N
T
T
R
L
T
A
S
S
Y
G
L
Q
P
Y
C
T
L
V
I
R
N
K
G
L
R
E
Q
L
V
N
H
S
-----
F
-
G
-
Q
---------------------------
Q
K
V
A
----
D
S
S
A
L
V
I
F
A
A
K
T
G
-
A
V
---
A
D
-
I
V
D
P
Y
I
S
--
E
L
---
S
Q
Q
R
Q
----
L
----
T
N
E
E
-
A
------------
E
N
T
R
N
Y
F
T
-
Q
K
L
Q
A
-
M
S
A
-
A
T
R
K
E
W
A
V
R
Q
A
Y
I
G
L
G
T
F
L
L
A
A
A
E
L
E
V
D
S
C
P
M
E
G
I
--
E
H
D
A
Y
D
N
I
--
L
S
L
K
D
L
G
L
S
T
-
V
-
F
A
C
P
V
----
G
Y
R
S
-----
E
A
----
D
-----
T
T
Q
F
Q
K
K
V
R
Q
P
L
S
R
F
K
13
PsiBlast_PDB
56.27
26%
-71
- C4 -
1OON
3
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
12
PsiBlast_PDB
56.23
26%
-73
- C4 -
1OO6
4
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
23
HHSearch
56.17
24%
-74
- C4 -
3OF4
15
?
A:
[2-209]
---
M
Y
L
E
K
L
Q
Q
W
R
Y
A
T
A
D
F
S
G
-
A
H
I
T
D
D
V
L
D
K
L
L
N
T
T
R
L
T
A
S
S
Y
G
L
Q
P
Y
C
T
L
V
I
R
N
K
G
L
R
E
Q
L
V
N
H
S
-----
F
-
G
-
Q
Q
---------------------------
K
V
A
----
D
S
S
A
L
V
I
F
A
A
K
T
G
A
V
A
D
I
V
D
P
-
Y
I
S
E
L
S
Q
--
Q
----
R
Q
L
T
N
----
E
----
E
A
E
N
T
R
------------
N
Y
F
T
Q
K
L
Q
----
A
--
M
S
A
-
A
T
R
K
E
W
A
V
R
Q
A
Y
I
G
L
G
T
F
L
L
A
A
A
E
L
E
V
D
S
C
P
M
E
G
I
--
E
H
D
A
Y
D
N
I
--
L
S
L
----
K
-
D
L
G
-
L
S
T
V
F
A
C
P
V
G
Y
R
S
-----
E
A
----
D
TTQF-
Q
K
K
V
R
Q
P
L
S
R
F
K
V
V
L
-
26
HHSearch
56.06
20%
-70
- C4 -
1NOX
1
NOX_THET8
A:
[7-205]
--
V
L
D
A
K
T
A
A
L
K
R
R
S
I
R
R
Y
R
K
-
D
P
V
P
E
G
L
L
R
E
I
L
E
A
A
L
R
A
P
S
A
W
N
L
Q
P
W
R
I
V
V
V
R
D
P
A
T
K
R
A
L
R
E
A
A
-----
F
-
G
-
Q
A
---------------------------
H
V
E
----
E
A
P
V
V
L
V
L
Y
A
D
L
E
-------
D
-
A
L
A
H
L
D
E
VI
H
P
---
G
V
Q
G
E
R
R
E
-
A
----
Q
K
Q
A
I
Q
------------
R
A
F
---------
A
A
-
M
G
Q
-
E
A
R
K
A
W
A
S
G
Q
S
Y
I
L
L
G
Y
L
L
L
L
L
E
A
Y
G
L
G
S
V
P
M
L
G
F
--
D
P
E
R
V
R
A
I
--
L
G
L
----
P
-
S
-
R
-
A
A
I
P
A
L
V
A
L
G
Y
P
A
-----
E
E
----
G
-----
Y
P
S
H
R
L
P
L
E
R
V
V
L
W
R
-
15
PsiBlast_PDB
56.06
26%
-72
- C4 -
1IDT
4
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
17
PsiBlast_PDB
56.02
26%
-75
- C4 -
1YLR
3
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-
16
PsiBlast_PDB
56.01
26%
-71
- C4 -
1YKI
4
NFSB_ECOLI
A:
[3-207]
-----
I
I
S
V
A
L
K
R
H
S
T
K
A
F
D
A
S
K
K
L
T
P
E
Q
A
E
Q
I
K
T
L
L
Q
Y
S
P
S
S
T
N
S
Q
P
W
H
F
I
V
A
S
T
E
E
G
K
A
R
V
A
K
S
A
-----
A
-
G
-
N
Y
--------------------------
V
F
N
E
R
K
M
L
D
A
S
H
V
V
V
F
C
A
K
T
A
-
M
--
D
-
D
V
-
W
L
K
L
V
-----
V
---
D
Q
E
D
A
----
D
------
G
R
F
A
T
P
E
A
K
A
A
N
D
K
G
R
K
F
F
A
D
M
H
R
-
K
D
L
H
D
-
D
A
E
------
W
M
A
K
Q
V
Y
L
N
V
G
N
F
L
L
G
V
A
A
L
G
L
D
A
V
P
I
E
G
F
--
D
A
A
I
L
D
A
E
F
G
L
K
E
K
G
Y
T
S
L
--------
V
V
V
P
V
G
H
H
S
-----
V
E
DFNA
T
-----
L
P
K
S
R
L
P
Q
N
I
T
L
T
E
V
-