@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0133: (2016-03-12 )
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVELFNLDRKPWIMPDNVSKEEAKRVIHTCPSGALQYIEK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20......---..30..-----.......----40.-----..-...---------.--.---.---50--.-----------.-..----...--------------..60........-70......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
E
E
T
L
L
E
R
G
Y
R
K
YRGA
D
V
D
I
Y
FNTNV---CEH-SG-----
N
C
VKGN
V
----
E
-
L
-----
F
N-LDR---------K--P---W---I---M-----------P-DN----V
S
K
--------------
E
E
A
K
R
V
I
H
TC
P
S
-
G
A
L
Q
Y
IEK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
79.41
22%
-115
- C4 -
4ID8
1
?
A:
[5-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
I
H
V
D
Q
D
K
---
C
Q
G
-
H
A
-----
R
C
K
A
L
A
P
----
E
-
L
-----
F
D
-
L
D
D
---------
Y
--
G
---
N
---
A
---
H
E
K
GDGV-----
V
-
P
A
----
D
L
I
--------------
D
K
A
W
L
A
K
S
N
C
P
E
-
N
A
I
D
I
T
E
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
71.57
16%
-108
- C4 -
1SJ1
3
FER_PYRFU
A:
[2-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
V
S
V
D
Q
D
T
---
C
I
G
-
D
A
-----
I
C
A
S
L
C
P
----
D
-
V
-----
F
E
-
M
N
D
E--------
G
--
K
---
A
Q
--
P
KVE
V
-----------
I
-
E
D
E
---
E
L
Y
--------------
N
C
A
K
E
A
M
E
A
C
P
V
-
S
A
I
T
I
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
67.11
27%
-98
- C3 -
4Z2T
1
?
A:
[11-591]
AETD
V
L
I
V
G
AG
P
A
G
A
M
S
A
T
L
L
A
S
L
G
I
R
S
L
M
I
N
RWRSTSPGPRSHIIN
Q
R
T
M
E
I
L
R
D
I
GL
E
E
S
A
K
S
L
AVPKEYMG
E
H
V
Y
A
TSLAGEEFGRIPAWASH
P
Q
A
H
A
E
H
E
L
A
SP
S
R
Y
C
D
L
P
Q
L
Y
F
E
P
M
V
V
S
E
A
A
L
R
G
A
D
V
R
F
LTEYL
G
H
V
E
D
QD
G
V
T
A
R
L
L
D
HVSG
A
E
Y
E
V
R
A
KYIIGADGAHS
L
V
A
Q
N
A
G
L
---
P
F
E
G
Q
M
G
G
S
I
N
I
E
F
S
A
D
L
SSL
C
E
H
R
K
G
-----
D
M
Y
Y
M
F
V
----
A
-
A
-----
L
R
-
M
I
R
PW-------
N
--
K
---
W
---
I
---
C
-----------
V
W
G
E
----
I
T
K
--------------
E
E
A
K
K
I
I
H
E
I
I
G
-
T
D
E
I
P
V
E
V
G
P
I
S
T
W
T
I
N
Q
Q
Y
A
VRNTSGR
V
F
C
M
G
DAV
H
R
H
T
PMGGL
G
L
N
T
S
V
Q
D
A
Y
N
L
A
W
K
L
A
L
V
L
K
GTAAPTLLDS
Y
D
A
E
R
S
P
V
A
K
Q
I
V
E
R
A
F
K
S
L
S
T
F
P
P
V
F
E
A
L
SLPPAPT
E
S
E
M
A
E
A
L
V
R
L
K
DAS
E
E
G
A
K
R
R
A
A
L
R
K
A
M
D
A
T
IIGLGGGHGVELN
Q
R
Y
V
S
RAVFPDGTPDPGFVRDQEF
F
Y
Q
A
S
TRPGAHL
P
H
V
W
L
T
E
NQ
R
R
I
S
T
L
D
L
C
GKG
R
F
T
L
L
T
G
LSGAA
W
K
H
E
A
E
Q
V
S
Q
S
L
G
I
E
L
K
V
C
VIGPGQEFVDTYGEYAKISEIGES
G
A
L
L
V
R
PDMFIAFRAKDAS
R
E
G
L
E
Q
L
N
V
A
V
K
S
I
L
GR
17
HHSearch
66.94
22%
-102
- C4 -
3GYX
2
?
B:
[2-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
V
D
P
S
K
---
C
D
G
-
C
K
GGEKT
A
C
M
Y
I
C
P
----
N
D
L
-----
M
I
-
L
D
P
E--------
E
--
M
K
--
A
---
F
---
N
-----------
Q
-
E
P
----
E
A
C
--------------
W
E
C
Y
S
C
I
K
I
C
P
Q
-
G
A
I
T
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
65.92
10%
-106
- C4 -
1IQZ
2
FER_BACTH
A:
[2-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
T
I
V
D
K
E
T
---
C
I
A
-
C
G
-----
A
C
G
A
A
A
P
----
D
-
I
-----
Y
D
-
Y
D
E
D--------
G
--
I
---
A
---
Y
V
--
T
LDDNQGIVE--
V
-
P
D
----
I
L
I
--------------
D
D
M
M
D
A
F
E
G
C
P
T
-
D
S
I
K
V
A
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
65.26
10%
-109
* C4 *
1WTF
3
FER_BACTH
A:
[1-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
Y
T
I
V
D
K
E
T
---
C
I
A
-
C
G
-----
A
C
G
A
A
A
P
----
D
-
I
-----
Y
D
-
Y
D
E
---------
D
--
G
---
I
---
A
---
Y
V
TLDDNQGIVE
V
-
P
D
----
I
L
I
--------------
D
D
M
M
D
A
F
E
G
C
P
T
-
D
S
I
K
V
A
D
E
PFDGDPNKFE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
62.22
25%
-95
- C4 -
1KQF
5
FDNH_ECOLI
B:
[125-188]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
D
F
Q
S
E
N
---
C
I
G
-
C
G
-----
Y
C
I
A
G
C
P
----
F
N
I
-----
P
R
-
L
N
K
E--------
D
--
N
---
R
---
V
---
Y
K
CTLC------
V
-
D
R
----
V
S
V
--------------
G
Q
E
P
A
C
V
K
T
C
P
T
-
G
A
I
H
F
G
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
60.33
19%
-86
- C4 -
3EUN
2
FER_ALLVD
A:
[2-61]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
I
T
D
E
---
C
I
N
-
C
D
-----
V
C
E
P
E
C
P
----
N
G
A
-----
I
S
-
Q
G
D
---------
E
--
T
---
Y
V
--
I
---
E
-----------
P
-
S
L
CTEC
V
G
H
--------------
Y
E
T
S
Q
C
V
E
V
C
P
V
-
D
A
I
I
K
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
59.88
19%
-86
- C4 -
3C8Y
3
PHF1_CLOPA
A:
[137-208]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
L
T
V
D
R
T
K
---
C
L
L
-
C
G
-----
R
C
V
N
A
C
G
----
K
-
N
TETYA
M
K
-
F
L
N
K
--------
N
G
K
T
---
I
---
I
---
G
A
EDEKC-----
F
-
D
D
----
T
N
C
--------------
L
L
C
G
Q
C
I
I
A
C
P
V
-
A
A
L
S
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
57.35
18%
-75
- C4 -
1JNR
3
?
B:
[2-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
F
V
N
P
E
K
---
C
D
G
-
C
K
ALERT
A
C
E
Y
I
C
P
----
N
-
D
-----
L
M
T
L
D
K
---------
E
K-
M
K
--
A
---
Y
---
N
-----------
R
-
E
P
----
D
M
C
--------------
W
E
C
Y
S
C
V
K
M
C
P
Q
-
G
A
I
D
V
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
56.01
16%
-81
- C4 -
2ZVS
2
YFHL_ECOLI
A:
[2-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
T
K
K
---
C
I
N
-
C
D
-----
M
C
E
P
E
C
P
----
N
E
A
-----
I
S
-
M
G
D
---------
H
--
I
---
Y
E--
I
---
N
-----------
S
-
D
K
CTEC
V
G
H
--------------
Y
E
T
P
T
C
Q
K
V
C
P
I
-
P
N
T
I
V
K
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.07
14%
-84
- C4 -
2VPZ
4
?
B:
[82-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
L
V
D
P
K
K
---
C
I
A
-
C
G
-----
A
C
I
A
A
C
P
----
Y
D
A
-----
R
Y
-
L
H
P
---------
A
--
G
---
Y
V--
S
---
K
CTFC-------
A
-
H
R
----
L
E
K
--------------
G
K
V
P
A
C
V
E
T
C
P
T
-
Y
C
R
T
F
G
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
52.57
12%
-77
- C4 -
1GTE
2
DPYD_PIG
A:
[944-1006]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
A
V
I
D
E
E
M
---
C
I
N
-
C
G
-----
K
C
Y
M
T
C
N
DSGY
Q
-
A
-----
I
Q
-
F
D
P
---------
E
--
T
---
H
---
L
---
P
-----------
T
-
V
T
----
D
T
C
--------------
T
G
C
T
L
C
L
S
V
C
P
I
I
D
C
I
R
M
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.47
28%
-26
- C4 -
1KQF
5
FDNH_ECOLI
B:
[120-189]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
A
N
G
I
V
D
--
F
Q
S
E
N
---
C
I
G
-
C
G
-----
Y
C
I
A
G
C
P
------------
F
N
-
I
P
R
L
N
KEDN
R
V
Y
K
--
C
---
T
---
L
---
C
-----------
V
-
D
R
----
V
S
V
--------------
G
Q
E
P
A
C
V
K
T
C
P
T
-
G
A
I
H
F
G
T
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.18
28%
-31
- C4 -
1KQG
5
FDNH_ECOLI
B:
[120-189]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
A
N
G
I
V
D
--
F
Q
S
E
N
---
C
I
G
-
C
G
-----
Y
C
I
A
G
C
P
------------
F
N
-
I
P
R
L
N
KEDN
R
V
Y
K
--
C
---
T
---
L
---
C
-----------
V
-
D
R
----
V
S
V
--------------
G
Q
E
P
A
C
V
K
T
C
P
T
-
G
A
I
H
F
G
T
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
48.83
11%
-57
- C1 -
1B34
-
SMD2_HUMAN
B:
[26-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
P
L
S
V
L
T
Q
S
V
K
N
N
T
Q
V
L
I
N
C
-----------
R
-
N
N
-----
K
K
L
L
G
R
V
----
K
-
A
-----
F
---
D
R
---------
H
--
C
---
N
---
M
---
V
-----------
L
-
E
N
----
V
K
E
--------------
M
D
R
Y
I
S
K
M
F
L
R
G
-
D
S
V
I
V
V
L
R
N
P
L
I
A
G
K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
48.45
15%
-43
- C4 -
2FGO
2
?
A:
[2-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
I
T
D
D
---
C
I
N
-
C
D
-----
V
C
E
P
E
C
P
----
N
-
G
-----
A
I
-
S
Q
G
E--------
E
--
I
---
Y
V
--
I
---
D
-----------
P
-
N
L
CTEC
V
G
H
--------------
Y
D
E
P
Q
C
Q
Q
V
C
P
V
-
D
C
I
P
L
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
47.60
16%
-66
- C4 -
1JB0
114
PSAC_THEEB
C:
[3-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
K
I
Y
D
T
---
C
I
G
-
C
T
-----
Q
C
V
R
A
C
P
----
T
D
V
-----
L
E
-
M
V
P
W--------
D
--
G
CKA
G
Q
I
A
S
---
S
-----------
P
-
R
T
----
E
D
C
--------------
V
G
C
K
R
C
E
T
A
C
P
T
-
D
F
L
S
I
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
46.99
14%
-29
- C4 -
1FEH
3
PHF1_CLOPA
A:
[127-209]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
K
T
E
Y
V
D
E
R
S
K
S
-------
L
T
V
D
R
T
K
---
C
L
L
-
C
G
-----
R
C
V
N
A
C
G
----
K
-
N
-----
T
E
-
T
Y
A
---------
M
--
K
---
F
---
L
---
N
-----------
K
-
N
G
----
K
T
I
I
G
A
EDEKCFDDTNC
L
L
C
G
Q
C
I
I
A
C
P
V
-
A
A
L
S
E
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
46.75
12%
-88
- C4 -
2IVF
8
?
B:
[175-238]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
L
V
D
Q
E
R
---
C
K
G
-
H
R
-----
H
C
V
E
A
C
P
----
Y
K
A
-----
I
Y
-
F
N
P
---------
V
--
S
---
Q
---
T
---
S
EKCILC-----
Y
-
P
R
----
I
E
K
--------------
G
I
A
N
A
C
N
R
Q
C
P
G
-
R
V
R
A
F
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------