@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0436: (2016-03-15 )
LKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTGKANPILTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQKIELEMDEIKLDSIIHDISVLESKDRPQNNEFITKFL
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------.......-..10.-.......-.------------20.....--...30..-.-.....40.-...----....50........60......-..-70........80........90........100---....-....110.......120-.......130.......140.......150......-.160----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------LKG
L
K
K
M
-
K
Y
S
-
I
-QFSDA
I
H
-
I
------------
L
A
Y
I
E
I
F--KNTNLL
S
-
S
-
E
I
I
AGSVK-T
N
P
----
A
N
I
R
R
I
M
S
N
L
KKA
N
L
I
TTQTGK-AN-PILTKPP
E
E
I
S
L
L
D
V
Y
K
SIEGNT
N
L
I
H
VDPK-T---NPD
C
-
I
VG
A
N
I
Q
Q
V
L
S
S
K
Y
E
L
L
-
Q
Q
K
I
E
L
E
M
D
E
I
K
L
D
S
I
I
H
D
I
S
V
LESKDRPQN
N
E
F
I
T
-KFL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.09
40%
-102
- C6 -
1XD7
1
YWNA_BACSU
A:
[11-132]
-----------------------------------------------------------------------------------------------------
A
I
H
-
I
------------
L
S
L
I
S
M
D
--
E
K
T
---
S
-
S
-
E
I
I
A
D
S
V
N
-
T
N
P
----
V
V
V
R
R
M
I
S
L
L
K
K
A
D
I
L
T
S
R
A
G
V
-
P
G
-
A
S
L
K
K
D
P
A
D
I
S
L
L
E
V
Y
R
A
V
Q
K
---------------
N
P
K
C
-
P
V
G
K
K
I
Q
N
A
L
D
E
T
F
E
S
V
-
Q
R
A
M
E
N
E
L
A
S
K
S
L
K
D
V
M
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
82.54
42%
-98
- C6 -
1XD7
1
YWNA_BACSU
A:
[6-132]
-----------------------------------------------------------------------------------------------
S
-
R
L
A
V
A
I
H
-
I
------------
L
S
L
I
S
M
D
--
E
K
T
---
S
-
S
-
E
I
I
A
D
S
V
N
-
T
N
P
----
V
V
V
R
R
M
I
S
L
L
K
K
A
D
I
L
T
S
R
A
G
V
-
P
G
-
A
S
L
K
K
D
P
A
D
I
S
L
L
E
V
Y
R
A
V
Q
K
N
---------------
P
K
C
-
P
V
G
K
K
I
Q
N
A
L
D
E
T
F
E
S
V
-
Q
R
A
M
E
N
E
L
A
S
K
S
L
K
D
V
M
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
80.30
36%
-109
- C6 -
1XD7
1
YWNA_BACSU
A:
[6-132]
-----------------------------------------------------------------------------------------------
S
-
R
L
A
V
A
I
H
-
I
------------
L
S
L
I
S
M
-----
D
E
K
T
S
-
S
-
E
I
I
A
D
S
V
N
-
T
N
P
----
V
V
V
R
R
M
I
S
L
L
K
K
A
D
I
L
T
S
R
A
G
V
-
P
G
-
A
S
L
K
K
D
P
A
D
I
S
L
L
E
V
Y
R
A
V
Q
K
---------------
N
P
K
C
-
P
V
G
K
K
I
Q
N
A
L
D
E
T
F
E
S
V
-
Q
R
A
M
E
N
E
L
A
S
K
S
L
K
D
V
M
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
75.30
20%
-98
- C6 -
3K69
2
?
A:
[7-152]
--------------------------------------------------------------------------------------------
M
K
-
L
-
D
F
S
V
A
V
H
-
S
------------
I
L
Y
L
D
A
H
--
R
-
D
S
K
V
A
-
S
-
R
E
L
A
Q
S
L
H
-
L
N
P
----
V
M
I
R
N
I
L
S
V
L
H
K
H
G
Y
L
T
G
T
V
G
K
-
N
G
G
Y
Q
L
D
L
A
L
A
D
M
N
L
G
D
L
Y
D
L
T
I
P
P
T
I
S
Y
A
-
R
F
I
T
G
PSK
A
D
Q
S
-
P
I
A
A
N
I
S
E
T
L
T
D
L
F
T
V
A
-
D
R
Q
Y
R
A
Y
Y
H
Q
F
T
M
A
D
L
Q
A
D
L
N
H
H
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
67.69
15%
-110
- C6 -
3LWF
9
?
A:
[17-153]
--------------------------------------------------------------------------------------
F
Q
G
M
-
K
I
T
-
T
-
K
G
R
Y
G
L
T
-
I
------------
T
L
E
L
A
K
R
--
I
G
D
G
P
I
S
-
L
-
R
S
I
A
Q
D
K
N
-
L
S
E
----
H
Y
L
E
Q
L
I
G
P
L
R
N
A
G
I
V
K
S
I
R
G
A
-
H
G
G
Y
V
L
N
G
D
P
E
K
I
T
A
G
D
I
I
R
T
L
E
G
P
I
V
L
V
----------
E
--
S
-
M
E
--
D
E
E
A
A
Q
R
E
L
W
T
R
M
-
R
N
A
V
R
D
V
L
D
Q
T
T
L
S
D
L
L
K
H
S
T
D
S
E
L
T
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
63.42
15%
-101
- C6 -
2Y75
3
CYMR_BACSU
A:
[2-127]
-----------------------------------------------------------------------------------------
L
-
K
I
S
-
T
-
K
G
R
Y
G
L
T
-
I
------------
M
I
E
L
A
K
K
--
H
G
E
G
P
T
S
-
L
-
K
S
I
A
Q
T
N
N
-
L
S
E
----
H
Y
L
E
Q
L
V
S
P
L
R
N
A
G
L
V
K
S
I
-----
G
G
Y
V
L
G
S
E
P
D
A
I
T
A
G
D
I
I
R
V
L
E
G
P
I
S
P
V
E
-
V
------------
L
E
--
D
E
E
P
A
K
R
E
L
W
I
R
I
-
R
D
A
V
K
E
V
L
D
S
T
T
L
E
D
L
A
S
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
60.85
22%
-80
- C4 -
4LLG
-
RPOD_ECOLI
F:
[6-612]
QS
Q
L
K
L
L
V
T
R
G
K
EQGYLT
Y
A
E
V
N
D
H
LPEDIVDSD
Q
I
E
D
I
I
Q
M
I
N
D
MGIQVMGRTTDP
V
R
M
Y
M
R
E
M
G
T
V
E
L
L
T
R
E
G
E
I
D
I
A
K
R
I
E
D
G
I
N
Q
V
-
Q
C
S
-
V
A
E
Y
P
E
A
I
T
Y
L
------------
L
E
Q
Y
D
R
V
--
E
A
E
E
A
R
L
-
S
-
D
L
I
T
G
F
V
D
--
D
P
----
E
L
A
R
E
K
F
A
E
L
R
A
Q
Y
V
V
T
R
D
T
I
K
-
A
-----
T
A
Q
E
E
I
L
K
L
S
E
V
F
K
Q
F
-----------------------------
R
L
V
P
K
Q
F
D
Y
L
-
V
N
S
M
R
V
M
M
D
R
V
R
T
Q
E
R
L
I
M
K
L
C
V
E
Q
C
K
M
P
-
K
K
N
F
I
T
-
L
F
T
GNETSDTWFNAAIAMNKPWSEKLHDV
S
E
E
V
H
R
A
L
Q
K
L
Q
Q
I
E
E
E
T
GLT
I
E
Q
V
K
D
I
N
R
R
M
S
I
G
E
A
K
A
R
R
A
K
K
E
M
V
E
A
N
L
R
L
V
I
S
I
A
K
K
Y
TNRGLQ
F
L
D
L
I
Q
E
G
N
I
G
L
M
K
A
V
D
K
FEYRRGYK
F
S
T
Y
A
T
W
W
I
R
Q
A
I
T
R
S
I
A
D
QART
I
R
I
P
V
H
M
I
E
T
I
N
K
L
N
R
I
S
R
Q
M
LQEMGREPTPEELAERMLMPEDK
I
R
K
V
L
K
IAKEPISMETPIGDDEDSHLGDFIEDTTLEL
P
L
D
S
A
T
T
E
S
L
R
A
A
T
H
D
V
L
A
G
LT
A
R
E
A
K
V
L
R
M
R
F
GIDMNTDYT
L
E
E
V
G
K
Q
F
DVTR
E
R
I
R
Q
I
E
A
K
A
L
R
K
L
RHP
S
R
S
E
V
L
RSFLD
2
PsiBlast_PDB
60.57
35%
-116
- C6 -
3K69
1
?
A:
[9-68]
-----------------------------------------------------------------------------------------------
L
-
D
F
S
V
A
V
H
-
S
------------
I
L
Y
L
D
A
H
--
R
D
S
K
V
A
S
-
R
-
E
L
-
A
Q
S
L
H
-
L
N
P
----
V
M
I
R
N
I
L
S
V
L
H
K
H
G
Y
L
T
G
T
V
G
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
58.86
12%
-79
- C6 -
3LWF
9
?
A:
[16-159]
--------------------------------------------------------------------------------------
Y
F
Q
G
M
K
I
T
-
T
-
K
G
R
Y
G
L
T
-
I
------------
T
L
E
L
A
K
R
--
I
G
D
G
P
I
S
-
L
-
R
S
I
A
Q
D
K
N
-
L
S
E
----
H
Y
L
E
Q
L
I
G
P
L
R
N
A
G
I
V
K
S
I
R
G
A
H
G
G
-
Y
V
L
N
G
D
P
E
K
I
T
A
G
D
I
I
R
T
L
E
G
--------
P
I
-
V
---
L
V
E
S
M
E
D
----
E
E
A
A
Q
R
E
L
W
T
R
M
R
N
A
V
R
D
V
L
D
Q
T
T
L
S
D
L
L
K
-------
H
S
T
D
S
E
L
T
D
G
Y
M
F
Y
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
53.88
18%
-93
- C6 -
1QGP
-
DSRAD_HUMAN
A:
[134-199]
---------------------------------------------------------------------------------------------
S
-
I
-
Y
Q
D
Q
E
Q
R
-
I
------------
L
K
F
L
E
E
L
--
G
E
G
K
A
T
T
-
A
-
H
D
L
S
G
K
L
G
-
T
P
K
----
K
E
I
N
R
V
L
Y
S
L
A
K
K
G
K
L
Q
K
E
A
G
T
-
P
P
L
W
K
I
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
52.90
10%
-124
- C6 -
2HEO
1
ZBP1_MOUSE
A:
[9-66]
--------------------------------------------------------------------------------------------------
D
N
L
E
Q
K
-
I
------------
L
Q
V
L
S
D
D
----
G
G
P
V
A
-
I
-
F
Q
L
V
K
K
C
Q
-
V
P
K
----
K
T
L
N
Q
V
L
Y
R
L
K
K
E
D
R
V
S
S
P
S
---
P
K
Y
W
S
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
52.33
20%
-109
- C6 -
3EDP
1
?
A:
[15-82]
-----------------------------------------------------------------------------------------------------
A
S
K
-
I
------------
K
D
S
I
N
R
D
EY
K
T
G
--
M
P
N
E
-
T
A
L
Q
E
I
Y
S
-
S
S
R
----
T
T
I
R
R
A
V
D
L
L
V
E
E
G
L
V
V
R
K
N
G
--
V
G
L
Y
V
Q
P
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
52.24
11%
-70
- C6 -
2FBH
4
?
A:
[10-146]
-----------------------------------------------------------------------------------
Y
F
G
T
L
L
A
-
Q
T
S
-
R
-
A
W
R
A
E
L
D
-
R
R
L
SHLGLSQA
R
W
L
V
L
L
H
L
A
--
R
H
R
D
S
P
T
-
Q
-
R
E
L
A
Q
S
V
G
-
V
E
G
----
P
T
L
A
R
L
L
D
G
L
E
S
Q
G
L
V
R
R
L
A
V
A
-
E
D
-
R
--------------------
R
A
K
H
I
V
L
T
P
K
------------
A
D
V
L
I
A
D
I
E
A
I
A
A
S
V
-
R
N
D
V
L
T
G
I
D
E
S
E
Q
A
L
C
Q
Q
V
L
L
R
I
L
A
N
L
E
N
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
51.86
17%
-78
- C6 -
1QBJ
1
DSRAD_HUMAN
A:
[6-70]
---------------------------------------------------------------------------------------------
S
-
I
-
Y
Q
D
Q
E
Q
R
-
I
------------
L
K
F
L
E
E
L
--
G
E
G
K
A
T
T
-
A
-
H
D
L
S
G
K
L
G
-
T
P
K
----
K
E
I
N
R
V
L
Y
S
L
A
K
K
G
K
L
Q
K
E
A
G
T
-
P
P
L
W
K
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
51.66
9%
-139
- C6 -
2LNB
-
ZBP1_HUMAN
A:
[21-78]
-----------------------------------------------------------------------------------------------------
E
Q
R
-
I
------------
L
Q
V
L
T
E
A
----
G
S
P
V
K
-
L
-
A
Q
L
V
K
E
C
Q
-
A
P
K
----
R
E
L
N
Q
V
L
Y
R
M
K
K
E
L
K
V
S
L
T
--
S
-
P
A
T
W
C
L
G
G
T
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
49.85
11%
-118
- C6 -
3EYI
2
ZBP1_HUMAN
A:
[14-67]
-------------------------------------------------------------------------------------------------------
D
-
I
------------
Y
R
F
L
K
D
-----
N
G
P
Q
R
-
A
-
L
V
I
A
Q
A
L
G
M
R
T
A
----
K
D
V
N
R
D
L
Y
R
M
K
S
R
H
L
L
D
M
D
-
E
Q
-
S
K
A
W
T
I
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
47.01
15%
-97
* C6 *
2G7U
-
?
A:
[7-72]
-------------------------------------------------------------------------------------------
D
Y
I
-
Q
-
S
I
E
R
G
F
A
-
V
------------
L
L
A
F
D
A
Q
----
R
P
N
P
T
-
L
-
A
E
L
A
T
E
A
G
-
L
S
R
----
P
A
V
R
R
I
L
L
T
L
Q
K
L
G
Y
V
A
G
S
----
G
G
R
W
S
L
T
P
R
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
46.87
8%
-71
- C6 -
1MZB
4
FUR_PSEAE
A:
[3-136]
-----------------------------------------------------------------------------------
M
V
E
N
S
E
L
-
R
K
A
G
L
-
K
V
T
L
P
R
V
-
K
------------
I
L
Q
M
L
D
S
--
A
Q
R
H
M
S
A
-
E
-
D
V
Y
K
A
L
M
E
-
A
G
E
D
V
G
L
A
T
V
Y
R
V
L
T
Q
F
E
A
A
G
L
V
V
R
H
------------------------
N
F
D
G
G
H
A
V
F
E
L
A
D
S
-
G
---
H
H
D
H
-
M
V
C
V
D
T
G
E
V
I
E
F
M
D
A
E
I
-
E
K
R
Q
K
E
I
V
R
E
R
G
F
E
L
V
D
H
N
L
V
L
Y
V
R
K
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
46.21
17%
-116
- C6 -
3BWG
1
YYDK_BACSU
A:
[13-80]
-------------------------------------------------------------------------------------------------------
E
-
I
------------
E
T
Y
I
E
E
H
QL
Q
Q
G
D
K
L
P
-
V
L
E
T
L
M
A
Q
F
E
-
V
S
K
----
S
T
I
T
K
S
L
E
L
L
E
Q
K
G
A
I
F
Q
V
R
G
--
S
G
I
F
V
R
K
H
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
45.94
14%
-85
- C6 -
2IA2
-
?
A:
[16-80]
--------------------------------------------------------------------------------------------
Y
V
-
Q
-
S
L
A
R
G
L
A
-
V
------------
I
R
C
F
D
H
R
----
N
Q
R
R
T
-
L
-
S
D
V
A
R
A
T
D
-
L
T
R
----
A
T
A
R
R
F
L
L
T
L
V
E
L
G
Y
V
A
T
D
----
G
S
A
F
W
L
T
P
R
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------