@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0932: (2016-03-20 )
MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPFIVFVVVNVNAYGLLIGFLISVIAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRVMEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK
Atome Classification :
(15 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....----------...------.10-----....---.....20-.......-..30..-------.-.....40.....------...50--........60..-------......70.....--...----------80------........90....----------....100...------.-...----110-------.-------...----...120.......130....------...140---------.......-----.------.150....-------...160.....-----------..170------.........180..-..---------------...190....-.-..200---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
F
W
Q
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D
M
M
------
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F
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Y
D
---
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--
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RN
L
G
-
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L
L
A
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-------
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-
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I
E
A
F
L
P
F
L
P
F
------
I
V
F
V
V
--
V
NV
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A
Y
G
L
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-------
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I
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I
A
A
I
A
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C
--
V
F
L
----------
L
A
------
R
KF
G
Q
T
R
F
L
R
F
I
SG----------
H
K
Q
I
K
R
V
M
E
W
------
I
-
D
RH----GF
S
-------
P
-------
I
F
I
----
L
L
V
MPFTPS
S
A
V
N
I
V
A
G
L
S
K
------
I
K
V
Y
-----------
Q
F
I
L
A
LV-----G------G
K
L
I
K
V
F
A
-------
I
S
Y
I
G
Y
D
F
V
D
L
-----------
I
H
Q
--------
P
L
K
L
A
I
L
A
V
S
V
V
I
L
-
W
F
---------------
V
G
K
R
L
E
H
W
MS-G-KNLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
94.11
17%
-183
* C7 *
4MB0
-
?
A:
[9-261]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PR
Y
W
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L
Y
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R
E
K
I
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E
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E
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M
T
A
K
A
----------
G
L
I
------
A
H
------
G
R
G
E
---
A
F
D
Y
L
I
--
G
E
-
R
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I
E
-
P
A
E
R
A
M
-------
R
-
A
A
V
A
K
L
L
L
A
E
N
P
------
V
V
S
V
----
N
G
N
V
A
A
L
V
P
K
E
-------
T
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E
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A
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A
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N
A
K
L
E
--
I
N
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FYRT
E
D
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V
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A
I
A
------
E
E
L
R
K
Y
D
P
E
I
E
L
L
G
----------
I
N
P
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K
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I
P
G
L
EHER
G
K
V
-
D
E
N
----
G
I
W
-------
K
-------
A
D
V
----
V
V
V
-
P
L
E
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R
T
E
A
L
V
R
M
G
K
------
F
V
I
T
I
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LNPLS
R
S
A
R
M
A
D
I
T
I
V
DN
I
V
R
A
------
Y
P
R
M
T
E
L
A
-------
R
E
M
K
D
Y
S
R
G
E
L
-----------
I
R
I
--------
I
E
E
Y
D
N
G
K
T
L
N
D
V
L
-
L
H
---------------
I
R
D
R
L
T
K
L
A
E
-
G
-
G
I
W
R
KKQLD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
93.15
15%
-168
* C6 *
4G3A
-
CLASP_DROME
A:
[5-231]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KPSD
L
D
G
F
I
Q
Q
MPKADMRV
K
V
Q
L
A
E
----------
D
L
V
------
T
F
------
L
S
D
D
---
T
-------
N
S
I
V
C
T
D
M
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F
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G
-------
L
M
P
W
L
T
G
-----
S
H
------
F
K
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A
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--
K
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L
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R
-------
L
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A
Y
T
A
T
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--
P
H
V
----------
I
D
------
R
-
L
G
D
S
R
----
D
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----------
R
E
K
A
Q
L
L
L
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D
------
L
M
E
H
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----
V
L
P
-------
P
-------
Q
A
L
----
I
D
K
L
A
T
S
C
F
K
H
K
N
A
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V
R
E
E
F
------
L
Q
T
I
-----------
V
N
A
L
H
E
Y
-----
G
------
T
Q
Q
L
S
V
R
V
-------
Y
I
P
P
V
C
A
L
L
G
D
-----------
P
T
V
--------
N
V
R
E
A
A
I
Q
T
L
V
E
I
Y
-
K
H
---------------
V
G
D
R
L
R
P
D
L
R
-
R
M
D
D
V
P
A
S
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L
A
M
L
E
Q
K
F
D
Q
V
K
L
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
82.75
15%
-186
- C7 -
4PON
-
?
A:
[7-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
------
L
K
------
K
I
L
P
---
Y
S
K
E
L
L
--
K
M
A
A
G
E
G
-
D
--------------
I
V
I
D
A
T
M
G
N
G
H
D
------
T
Q
F
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A
--
E
L
V
G
E
N
G
H
V
Y
A
F
-------
D
I
Q
-------
E
S
A
--
V
A
N
----------
T
K
------
E
R
L
G
E
A
Y
Q
A
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T
T
L
F
----------
H
K
S
H
D
K
I
A
K
S
------
L
-
P
P
E
----
T
H
G
-------
K
-------
V
A
A
----
A
V
F
N
L
G
N
G
S
S
T
I
K
A
I
E
Q
L
L
S
------
I
M
K
D
-----------
E
G
L
I
V
L
V
VY---
H
------
G
N
D
V
L
D
F
C
R
N
LDQQA
A
R
V
L
T
Y
G
F
I
N
Q
-----------
Q
N
D
--------
P
--------
P
F
I
V
A
-
I
E
---------------
K
K
A
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
81.04
12%
-165
- C6 -
4HQO
4
?
A:
[6-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
K
Y
----------
S
E
E
------
V
C
------
N
E
Q
V
---
D
L
Y
L
L
V
D
G
S
G
S
I
G
Y
P
-
N
W
I
T
K
V
-------
I
-
P
M
L
N
G
L
I
N
S
L
S
L
S-----
R
D
T
I
N
--
L
Y
M
N
L
F
G
S
Y
T
T
E
-------
L
I
R
L
G
S
G
Q
S
I
D
----
K
R
Q
----------
A
L
------
S
K
V
T
E
L
R
K
T
Y
T
P
Y
G
----------
T
T
S
M
T
A
A
L
D
E
------
V
-
Q
K
H
----
L
N
D
RVNREK
A
I
-------
Q
L
V
----
I
L
M
T
D
G
V
P
N
S
K
Y
R
A
L
E
V
A
N
K
------
L
K
Q
R
-----------
N
V
R
L
A
V
I
-----
G
I
G
QGIN
H
Q
F
N
R
L
I
A
-------
G
C
R
P
R
E
P
N
C
K
F
-----------
Y
S
Y
--------
A
D
W
N
E
A
V
A
L
I
K
P
F
I
-
A
K
---------------
V
C
T
E
V
E
R
V
A
N
-
C
-
G
P
W
D
PWTACSVTC
G
R
G
T
H
S
R
S
R
P
SLHEKCTT
H
M
V
S
E
C
E
E
G
E
C
P
H
H
H----------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
75.78
16%
-162
- C6 -
1A4U
-
ADH_DROLE
A:
[1-254]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
L
T
N
----------
K
N
V
------
I
F
V
AALGG
I
G
L
D
---
T
S
R
E
L
V
--
K
--
R
N
L
K
-
N
F
V
I
L
D
-------
R
-
V
E
N
P
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A
L
A
E
L
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A
I
NPKVN
I
T
F
H
T
--
Y
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V
P
V
A
E
S
K
K
-------
L
L
K
K
I
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D
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L
K
T
V
D
--
I
L
I
----------
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A
G
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D
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A
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L
----------
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N
T
T
T
A
I
L
D
F
------
W
-
D
K
R
KGGP
G
G
I
-------
I
-------
A
N
I
----
C
S
V
T
G
F
N
A
I
H
Q
V
-
P
V
Y
S
A
S
K
------
A
A
V
V
-----------
S
F
T
N
S
L
A
-----
K
------
L
A
P
I
T
G
V
T
-------
A
Y
S
I
N
P
G
I
T
R
T
PLVH
T
F
N
S
WLD
V
E
P
--------
R
V
A
E
L
L
L
S
H
P
T
Q
T
S
-
E
Q
---------------
C
G
Q
N
F
V
K
A
I
E
A
N
-
K
N
G
A
IWKLDLG
T
L
E
A
I
E
W
T
KHWDSHI------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
75.41
14%
-172
- C7 -
4PAW
3
PYRE_HELPY
A:
[22-218]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
D
I
K
----------
A
C
Y
------
Q
N
------
A
K
A
L
---
L
E
G
H
F
L
--
L
S
S
G
F
H
S
-
N
Y
Y
L
Q
S
-------
A
-
K
V
L
E
D
P
K
L
A
E
Q
L
------
A
L
E
L
A
--
K
Q
I
Q
E
A
H
L
N
I
E
C
-------
V
C
S
P
--
A
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G
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A
--
G
Y
E
----------
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A
------
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A
L
G
V
----
R
F
I
F
T
----------
E
R
V
-
D
N
T
M
A
L
------
R
-
R
G
F
----
E
V
K
-------
K
-------
N
E
K
----
I
L
V
C
E
D
I
I
T
T
G
K
S
A
M
E
C
A
K
V
------
L
E
E
------------------
K
-----
G
------
A
Q
I
V
A
F
G
A
-------
L
A
N
R
G
I
C
K
R
A
H
-----------
S
H
L
K
A
Q
EGACL
P
S
H
L
P
L
F
A
L
E
D
F
V
F
D
M
H
---------------
K
P
S
S
C
P
L
C
A
T
-
S
-
V
A
I
K
P---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
74.83
16%
-171
- C6 -
4DO7
2
?
A:
[3-289]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALRIDS
H
Q
H
F
W
R
YRAADYPWIG
A
G
M
------
G
V
------
L
A
R
D
Y
L
P
D
A
L
H
P
L
--
M
H
A
Q
A
L
G
-
A
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I
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ARAG
R
D
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T
-
A
F
L
L
E
L
A
C
D
E
A
R
------
I
A
A
V
V
GW
E
D
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A
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Q
L
A
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A
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WRGTK
L
R
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F
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Q
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--
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A
----------
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------
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D
A
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F
A
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V
A
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L
Q
A
N
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Y
D
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E
R
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L
P
D
V
Q
A
F
------
C
-
A
R
H
----
D
A
H
-------
W
-------
L
V
L
D
HAG
K
P
A
L
A
E
F
D
T
A
L
A
R
W
R
A
A
L
R
E
------
L
A
A
L
-----------
P
H
V
V
C
K
L
-----
S
------
G
L
V
T
E
A
D
W
-------
R
R
G
L
R
A
S
D
L
R
H
-----------
I
E
Q
--------
C
L
D
A
A
L
D
A
F
G
P
Q
R
L
-
M
F
G
SDWPVCLLAAS
Y
D
E
V
A
S
L
V
E
R
W
A
E
-
S
-
R
L
S
A
A
E
R
S
A
L
W
G
G
T
A
A
R
C
Y
ALP----------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
70.45
15%
-177
- C6 -
4M59
3
?
A:
[6-714]
PD
A
Q
V
L
V
L
A
I
S
S
HPLPT
L
A
A
F
L
A
S
R
R
D
E
L
L
R
AD
I
T
S
L
L
K
A
L
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L
S
GH
W
E
W
A
L
A
L
L
R
W
A
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K
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GAAD
A
S
A
L
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M
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A
L
G
R
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GQ
H
D
A
V
C
A
L
L
D
ETPLPPG
S
R
L
D
V
R
A
Y
T
T
V
L
H
A
L
S
R
A
GR
Y
E
R
A
L
E
L
F
A
E
L
R
R
Q
G
V
A
P
T
L
V
T
Y
N
V
V
L
D
V
Y
G
R
M
GRS
W
P
R
I
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A
L
L
D
E
M
R
A
A
G
V
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D
G
F
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A
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I
A
A
C
S
R
D
GL
V
D
E
A
V
A
F
F
E
D
L
K
A
R
GHAPS
V
V
T
Y
N
A
L
L
Q
V
F
G
KAGN
Y
T
E
A
L
R
V
L
G
E
M
E
Q
N
G
C
Q
P
D
A
V
T
Y
N
E
L
A
G
TE
E
A
A
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C
L
D
T
M
A
SPN
A
F
T
Y
N
T
V
M
T
A
Y
G
N
V
GKV
D
E
A
L
A
L
F
D
----------
Q
M
K
KT
G
F
V
P
N
V
------
N
T
Y
N
---
L
V
L
G
M
L
--
G
K
K
S
R
F
T
-
V
M
L
E
M
L
-------
G
-
E
M
S
R
S
G
C
T
P
N
R
V
------
T
W
N
T
M
--
L
A
V
S
G
K
R
G
M
E
D
Y
-------
V
T
R
V
L
E
G
M
R
S
S
------------------
G
------
V
E
L
S
R
D
T
Y
N
T
L
I
A
A
Y
G
R
C
GS----
R
T
N
A
F
K
M
Y
N
E
------
M
-
T
S
A
----
G
F
T
-------
P
C
I
T
T
Y
N
A
L
L
N
----
V
L
S
R
Q
G
D
W
S
T
A
Q
S
I
V
S
K
M
R
T
K
G
F
K
P
N
E
Q
S
Y
-----------
S
L
L
L
Q
C
Y
A
K
---
G
------
G
N
V
A
G
I
A
A
-------
I
E
N
E
V
Y
G
S
G
A
V
-----------------------
F
P
S
W
V
I
L
R
T
L
V
I
A
-
N
F
---------------
K
C
R
R
L
D
G
M
E
T
-
A
-
F
Q
E
V
K
A
RG
Y
N
P
D
L
V
I
F
N
S
M
L
S
I
Y
A
K
N
GM
Y
S
K
A
T
E
V
F
D
S
I
K
R
S
G
L
S
P
D
L
I
T
Y
N
S
L
M
D
M
Y
A
K
C
SE
S
W
E
A
E
K
I
L
N
Q
L
K
C
SQTMKPD
V
V
S
Y
N
T
V
I
N
G
F
C
K
QGL
V
K
E
A
Q
R
V
L
S
E
M
V
A
D
G
M
A
P
C
A
V
T
Y
H
T
L
V
G
G
Y
S
S
LEMF
S
E
A
R
E
V
I
G
Y
M
V
QHGLKPMEL
T
Y
R
R
V
V
E
S
Y
C
R
AF
E
E
A
R
G
F
L
S
EVKAL
E
A
Y
I
E
D
A
9
Fugue
69.24
13%
-186
- C7 -
1A8Y
-
?
?:
[127-235]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
L
I
E
G
E
R
----------
E
L
Q
------
A
F
------
E
N
I
E
---
D
E
I
K
L
I
--
G
Y
F
K
N
K
D
-
S
--
E
H
Y
-------
K
-
A
F
K
E
A
A
E
E
F
H
P
Y
------
I
P
F
F
A
--
T
F
D
S
K
V
A
K
K
L
T
L
-------
K
L
N
E
I
D
F
Y
E
A
F
M
E
E
P
V
T
I
----------
P
D
------
K
P
N
S
E
E
E
I
V
N
F
V
E
E
----------
H
R
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.09
24%
-68
- C3 -
3CDK
-
SCOB_BACSU
B:
[130-181]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
L
V
N
G
----------
A
K
R
I
V
V
I
M
E
H
------
V
-
N
K
H
----
G
E
S
-------
K
-------
V
K
K
----
T
C
S
L
P
L
T
G
Q
K
V
V
H
R
L
--
I
T
D
------
L
A
V
F
-----------
D
F
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
42.79
18%
-40
- C7 -
2AXK
-
KA156_TITDI
A:
[2-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
T
N
V
K
C
S
G
S
S
K
C
--
V
K
I
----------
C
I
------
D
R
Y
N
-
T
R
G
A
K
C
I
N
G
----------
R
C
T
C
Y
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
22.50
19%
213
- C4 -
1U5L
-
?
A:
[119-139]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
V
V
G
G
L
G
--
G
Y
A
----------
L
G
------
S
A
M
S
G
M
R
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
20.05
15%
338
- C2 -
2LX0
-
?
A:
[20-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
G
-
F
W
---------------
L
F
K
Y
L
Q
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
19.99
18%
447
- C1 -
2K9J
-
?
B:
[714-724]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
K
L
L
I
T
I
H
D
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
2.23
15%
386
- C5 -
1TPX
-
PRIO_SHEEP
A:
[127-142]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
--
G
Y
M
----------
L
G
------
S
A
M
S
R
P
L
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------