@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo2578: (2016-04-05 )
VKKYFITIMILLFGALSLSACQKDDEVENSSPPKVDLKNEIPIILIHGSGGDTHSLDEMADHLMNKYKSSNEAMSMSINSNGKIAYQGALTKDAKRPIIKFGFDQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYFAEDYSNDNAVPTLRKLVAIGSPFNDLDPDDNGDGLAFNKLPSNTPQLDYFIDKKTKISTDLEVLSIAGALSEDNLTDGIVPTNSSLASRLFMPNNAKVYMEDLQVGESAIHQTLHETSESIEKTHWFLEKSSPEKKEIKLISK

Atome Classification :

(20 SA) .........10........20........30........40........50...---....-.60.-.......70--......-...80........90........100.....---..110.......120........130.-......140.......150.......160.......170.....-----.------------.--------180----------.---------.----------------.--------.------------.---------.--------.-.---------.------------190-.-----------.-------------.------------.----------------.---------------.---------------.------------.-------------.-----------------200----.----------.--....----.-..210.......220.------......230....----------...240........--250.......260....--.-..270-.......280.......290----
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) VKKYFITIMILLFGALSLSACQKDDEVENSSPPKVDLKNEIPIILIHGSGGDTH---SLDE-MADH-LMNKYKSS---NEAMSM-SINSNGKIAYQGALTKDAKRPIIKFGFDQNQ---ATPDDWSKWLKIAM-EDLKSRYGFTQM-DGVGHSNGGLALTYFAEDYSNDNAVPTLRKLVAIGSPFNDLDPD-----D------------N--------G------------D---------G----------------L--------A------------F---------N--------K-L---------P------------S---N-----------T-------------P------------Q----------------L---------------D---------------Y------------F-------------I-----------------D------K----------K--TKIS----T-DLEVLSIAGALSEDNL------TDGIVPTNSSLAS----------RLFM-PNNAKVYME--DLQVGESAIHQTLHETS--E-SIEKT-HWFLEKSSPEKKEIKLISK-----
1 PsiBlast_PDB 98.6473% -65 - C1 -3DS8 ? A:[2-251] --------------------------------------DQIPIILIHGSGGNAS---SLDK-MADQ-LMNEYRSS---NEALTM-TVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQ---ATPDDWSKWLKIAM-EDLKSRYGFTQM-DGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPN-----D------------N--------G------------M---------D----------------L--------S------------F---------K--------K-L---------P------------N---S-----------T-------------P------------Q----------------M---------------D---------------Y------------F-------------I-----------------K------N----------Q--TEVS----P-DLEVLAIAGELSEDNP------TDGIVPTISSLAT----------RLFM-PGSAKAYIE--DIQVGEDAVHQTLHETP--K-SIEKT-YWFLEKFKTDETVIQL--------
28 HHSearch 94.9773% -55 - C1 -3DS8 ? A:[2-250] --------------------------------------DQIPIILIHGSGGNAS---SLDK-MADQ-LMNE-YRSSNEALTMTV-NSEGKIK--FEGKLTKDAKRPIIKFGFEQNQ---ATPDDWSKWLKIAM-EDLKSRYGFTQM-DGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPN-----D------------N--------G------------M---------D----------------L--------S------------F---------K--------K-L---------P------------N---S-----------T-------------P------------Q----------------M---------------D---------------Y------------F-------------I-----------------K------N----------Q--TEVS----P-DLEVLAIAG------ELSEDNPTDGIVPTISSLAT----------RLFM-PGSAKAYIE--DIQVGEDAVHQTLHETP--K-SIEKT-YWFLEKFKTDETVIQ---------
33 Fugue 86.1967% -41 - C1 -3DS8 ? A:[2-254] --------------------------------------DQIPIILIHGSGGNAS---SLDKMADQLMNEYR---S---SNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQ---ATPDDWSKWLKI-AMEDLKSRYGF-TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPN-----D------------N--------GM-----------D---------L----------------S--------F------------K---------K--------L------------------------P---N-----------S-------------T------------P----------------QM--------------D---------------Y------------F-------------I-----------------K------N----------Q--TEVS----P-DLEVLAIAGELSEDNP------TDGIVPTISSLAT----------RL-FMPGSAKAYIE--DIQVGEDAVHQTLHETP--K-SIEKT-YWFLEKFKTDETVIQLDYK-----
3 PsiBlast_PDB 70.2325% -51 - C1 -3LP5 ? A:[6-239] -----------------------------------------PVIMVPGSSASQN---RFDS-LITE-LGKETPKK---HSVLKL-TVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVWLNTAF-KALVKTYHFNHF-YALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-----T------------T--------A------------K---------T----------------S--------M------------F---------K--------E-L---------------------------------------------------------------------------------------------------------------------------------------------Y-----------------R------Y----------R--TGLP----E-SLTVYSIAG--TENYT------SDGTVPYNSVNYG----------KYIF-QDQVKHFTE--ITVTGANTAHSDLPQNK--Q-IVSLIRQYLLAETMPDK-------------
12 HHSearch 68.5625% -50 - C1 -3LP5 ? A:[3-238] --------------------------------------RMAPVIMVPGSSASQN---RFDS-LITE-LGKETPKK---HSVLKL-TVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAVWLNTAF-KALVKTYHFNHF-YALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-----T------------------------------------------------------------------------------------------------------------------T------------A---K-----------T-------------S------------M----------------F---------------K---------------E------------L-------------Y-----------------R------Y----------R--TGLP----E-SLTVYSIAGTENY--T------SDGTVPYNSVNYG----------KYIF-QDQVKHFTEITVTG--ANTAHSDLPQNK--Q-IVSLI-RQYLLAETMPD-------------
29 HHSearch 57.1722% -48 - C1 -1IUP ? A:[24-273] --------------------------------------EGQPVILIHGSGPGVSAYANWRL-TIPA-LS-K-FYR-----VIAP-DMVGFGFTDRPE----------------NYN---YSKDSWVDHIIGIM-DALE----IEKA-HIVGNAFGGGLAIATALRYSE-----RVDRMVLMGAAGTRFDVT-----E------------GLNAV----WGYTPSIENM---RNLLD-----I----------------F--------A------------YDRSLV----T--------D-E---------LARLRYEA-----S---IQPGF-------Q-------------E------------S----------------F---------------S---------------SMFPEPRQRWIDAL-------------A-----------------S------S----------D--EDIK----TLPNETLIIHG------R------EDQVVPLSSSLRL----------GELI-DR-A---QL--HVF--GRCGHWTQIEQT--DRFNRLV-VEFFNEA-----------------
18 HHSearch 56.4222% -60 - C1 -3BF7 - YBFF_ECOLI A:[14-254] -------------------------------------HNNSPIVLVHGLFGSLD---NLGV-LARD-LVN--DHN-----IIQV-DVRNHGLSPR---------EP---------V---MNYPAMAQDLVDTL-DALQ----IDKA-TFIGHSMGGKAVMALTALAPD-----RIDKLVAIDIAPVDYHVR-----RHDE---------IFAA-----I------------N---------AVSESDAQTRQQAAAI-M--------RQ-----------H---------L--------N-EE--------G------------V---I-----------Q-------------F------------L----------------L---------------K---------------S------------FVDGEWRFNVPVL-W-----------------DQYPHIVG----------W--EKIP----AWDHPALFIPG------G------NSPYVSEQYRDDL----------LAQF-PQ-A---RA--HVI--AGAGHWVHAEKP--DAVLRAI-RRYLND------------------
27 HHSearch 53.6317% -39 * C1 *1TQH EST_GEOSE A:[15-245] --------------------------------------GERAVLLLHGFTGNSA---DVRM-LGRF-LESK-GYT-----CHAP-IYKGHGVPPEE---------L--------VH---TGPDDWWQDVMNGY-EFLKNK-GYEKI-AVAGLSLGGVFSLKLGYTV-------PIEGIVTMCAPMYIKSEE-----T------------MYEGVLEY-A------------R---------E----------------Y--------KKR----------E---------G--------KSE---------E------------Q---IEQEMEKFKQTPM-------------K------------T----------------L---------------K---------------A------------LQELI---------A-----------------D------V----------R--DHLD----LIYAPTFVVQA------R------HDEMINPDSANII----------YNEI-ES-P-VKQI--KWY--EQSGHVITLDQEKDQ-LHEDI-YAFLESL-----------------
15 HHSearch 52.1813% -42 - C1 -3WI7 DHAA_AGRFC A:[39-302] --------------------------------------SGAPIVFLHGNPTSSY---LWRH-IFRR-LHG--HGR-----LLAV-DLIGYGQSSKP-----------------DIE---YTLENQQRYVDAWF-DALD----LRNV-TLVLQDYGAAFGLNWASRNPD-----RVRAVAFFEPVLRNIDSV-----D------------L--------SPEFVTRRAKLRQP---------GEGEIFVQQENRFLTELF--------PWF----------FLTP------L--------A-P---------E------------D---L-----------R-------------Q------------YQTPFPTPHSRKAILAGP---------------R---------------N------------LPVDGEPASTVAFLE-----------------Q------A----------V--NWLN----TSDTPKLLLTF------K------PGFLLTDAILKWS----------QVTI-RN----LEI--EAA--GAGIHFVQEEQP--ETIARLL-DAWLTRIA----------------
25 HHSearch 50.8715% -35 - C1 -3OM8 ? A:[26-265] --------------------------------------EKPLLALSNSIGTTLH---MWDA-QLPA-LTR--HFR-----VLRY-DARGHGASSVP-----------------PGP---YTLARLGEDVLELL-DALE----VRRA-HFLGLSLGGIVGQWLALHAPQ-----RIERLVLANTSAWLGPAAQWD--E------------R--------IAAVL--------QAEDMSETAAGF---------------L--------G------------N---------WF-------P-P---------ALLERAEP-----V---V-----------E-------------R------------F----------------RAMLMATNRHGLAGSFA---------------A------------V-------------RDT---------------D------L----------R--AQLA----RIERPTLVIAG------A------YDTVTAASHGELI----------AASI-AG-A---RL--VTL--P-AVHLSNVEFP--QAFEGAV-LSFLG-------------------
30 HHSearch 50.6616% -31 - C1 -2XUA - ? A:[24-264] -------------------------------------GNAPWIVLSNSLGTDLS---MWAP-QVAA-LS-K-HFR-----VLRY-DTRGHGHSEAP-----------------KGP---YTIEQLTGDVLGLM-DTLK----IARA-NFCGLSMGGLTGVALAARHAD-----RIERVALCNTAARIGSPE-----V------------WVPRAVKART------------E---------GMHALADAV--------L--------PR-----------W---------FTADYMER-E-P---------V------------V---LAMI--------R-------------D------------VFVHTDKEG--------Y---------------A---------------SNCEA--------IDA-----------A-----------------D------L----------R--PEAP----GIKVPALVISG------T------HDLAATPAQGREL----------AQAI-AG-A---RY--VEL---DASHISNIERA--DAFTKTV-VDFLTE------------------
26 HHSearch 50.2816% -34 - C1 -3V48 RUTD_ECOSE A:[12-263] ------------------------------------YADAPVVVLISGLGGSGS---YWLP-QLAV-LE-Q-EYQ-----VVCY-DQRGTGNNPD---------TL-------AED---YSIAQMAAELHQAL-VAAG----IEHY-AVVGHALGALVGMQLALDYPA-----SVTVLISVNGWLRINAHT-----R------------RCFQVRER-LL-----------YSGGAQA---W----------------V--------EAQPL--------FLYPADWMAAR--------A-P---------R------------L---E-----------AEDALALAHFQGKNN------------L----------------LRRL------------N---------------A------------L-------------KRA---------------D------F----------S--HHAD----RIRCPVQIICA------S------DDLLVPTACSSEL----------HAAL-PD-S---QK--MVM--PYGGHACNVTDP--ETFNALL-LNGLASLLHH--------------
21 HHSearch 50.2017% -49 - C1 -3W06 KAI2_ARATH A:[18-270] --------------------------------------GEATIVLGHGFGTDQS---VWKH-LVPH-LVD--DYR-----VVLY-DNMGAGTTNPD---------YF---DF-DRY---SNLEGYSFDLIAIL-EDLK----IESC-IFVGHSVSAMIGVLASLNRPD-----LFSKIVMISASPRYVNDV-----D------------YQGGFEQEDL------------NQLFE-----A----------------IRSNY----KAWCLG-------F---------APLAVGGDMD-S---------I------------A---V-----------Q-------------E------------F----------------S---------------R---------------T------------L-------------FNMRPDIALSVGQTIFQSD------M----------R--QILP----FVTVPCHILQS------V------KDLAVPVVVSEYL----------HANL-GC-E--SVV--EVI--PSDGHLPQLSSP--DSVIPVI-LRHIRNDI----------------
22 HHSearch 49.9214% -42 - C1 -3DQZ - HNL_ARATH A:[3-256] --------------------------------------RKHHFVLVHNAYHGAW---IWYK-LKPL-LESA-GHR-----VTAV-ELAASGIDPRPI----------------QAV---ETVDEYSKPLIETL-KSLP---ENEEV-ILVGFSFGGINIALAADIFPA-----KIKVLVFLNAFLPDTTHVPSHVLDK-----------YMEM-----P------------G---------GLGDCEFSSHETRNG--TM-------SLL----------K---------M--------G-P---------KFMKARLYQNCPIE---D-----------Y-------------E------------L----------------A---------------K---------------M------------L-------------H-----------------R------QGSFFTEDLSKK--EKFSEEGYG-SVQRVYVMS------S------EDKAIPCDFIRWM----------IDNF-NV-S---KV--YEI--DGGDHMVMLSKP--QKLFDSL-SAIATD------------------
19 HHSearch 49.3117% -35 - C1 -1WOM RSBQ_BACSU A:[18-270] -------------------------------------SGKASIMFAPGFGCDQS---VWNA-VAPA-FEE--DHR-----VILF-DYVGSGHSDLRAY-------D------LNRY---QTLDGYAQDVLDVC-EALD----LKET-VFVGHSVGALIGMLASIRRPE-----LFSHLVMVGPSPCYLNDP-----PEYYGGFEEE---Q--------LLGLL--------E---------M----------------MEKNYIGWATV-----------FAATVL----N--------Q-P---------DRP----------E---I-----------K-------------EELESRFCSTDPVI----------------A---------------R---------------Q------------F-------------AKAAFFS-----------D------H----------R--EDLS----KVTVPSLILQC------A------DDIIAPATVGKYM----------HQHL-PY-S---SL--KQM--EARGHCPHMSHP--DETIQLI-GDYLKAH-----------------
34 Fugue 49.2814% -42 - C1 -1I6W - ESTA_BACSU A:[3-181] ---------------------------------------HNPVVMVHGIGGASF---NFAG-IKSY-LVSQGWSR---DKLYAV-D-------------------------FWDKT---GTNYNNGPVLSRFV-QKVLDETGAKKV-DIVAHSMGGANTLYYIKNL---DGGNKVANVVTLGGANRLTTGK-----A------------L--------P------------G----------------------------------------------------------T--------D-P---------N------------Q---K-----------I-------------L------------Y----------------T---------------S---------------I------------Y-------------S-----------------S------A----------D--MIVM----N-YLSRLDGARNVQIHGV------GHIGLLYSSQVNS----------LIKE-GLNGGGQNT--N--------------------------------------------------
23 HHSearch 48.5014% -45 - C1 -3W04 D14_ORYSJ A:[16-265] --------------------------------------GERVVVLSHGFGTDQS---AWSR-VLPY-LTR--DHR-----VVLY-DLVCAGSVNPD---------HF---DF-RRY---DNLDAYVDDLLAIL-DALR----IPRC-AFVGHSVSAMIGILASIRRPD-----LFAKLVLIGASPRFLNDS-----DYHGGFELE----E--------I------------Q---------QV---------------F--------DAMGANYSAWATGYAPLAV----GAD------V-P---------A------------A---V-----------Q-------------E------------F----------------S---------------RTLFNMRPDISLHVCQT------------V-------------FKT---------------D------L----------R--GVLG----MVRAPCVVVQT------T------RDVSVPASVAAYL----------KAHL-GG-R--TTV--EFL--QTEGHLPHLSAP--SLLAQVL-RRALAR------------------
24 HHSearch 48.4317% -36 - C1 -3PFB ? A:[44-265] -------------------------------------EIYDMAIIFHGFTANRNTS-LLRE-IANS-LRDE-NIA-----SVRF-DFNGHGDSDG----------K-------FEN---MTVLNEIEDANAIL-NYVKTDPHVRNI-YLVGHAQGGVVASMLAGLYPD-----LIKKVVLLAPAATLKGDA-----L------------EGNTQG---V------------T---------Y----------------N--------PDHIP--------D---------R--------L-P---------F------------KDLTL-----------G-------------G------------F----------------Y---------------L---------------R------------I-------------AQQL--------------P------I----------Y--EVSA----QFTKPVCLIHG------T------DDTVVSPNASKKY----------DQIY-QN----STL--HLI--EGADHCFSDSYQ--KNAVNLT-TDFLQ-------------------
14 HHSearch 47.5113% -35 - C1 -3QVM ? A:[24-278] -----------------------------------TGGGEKTVLLAHGFGCDQN---MWRF-MLPE-LE-K-QFT-----VIVF-DYVGSGQSDLESFS------T-------KRY---SSLEGYAKDVEEIL-VALD----LVNV-SIIGHSVSSIIAGIASTHVGD-----RISDITMICPSPCFMNFPP----DYVGGFERDDLEEL--------I------------NLMDKNYIG-W----------------A--------N------------Y---------L--------A-PLVMGASHSSE------------L---I-----------G-------------ELSGSFCTTDP--I----------------VA--------------K---------------T------------FAKATFF-------S-----------------D------Y----------R--SLLE----DISTPALIFQS------A------KDSLASPEVGQYM----------AENI-PN-S---QL--ELI--QAEGHCLHMTDA--GLITPLL-IHFIQNN-----------------
41 Fugue 47.2614% -37 - C1 -3BF8 YBFF_ECOLI A:[1-255] ---------------MKLNIRAQTAQNQHNNSP---------IVLVHGLFGSLD---NLGV-LARD-LVNDHN-------IIQV-DVRNHGLSPREPVM------------------------NYPAMAQDLV-DTLDAQ-QIDKA-TFIGHSMGGKAVMALTALAPDR-----IDKLVAIDIAPVDYHVR-----R------------H--------D------------E---------I----------------FA-------A------------I---------N--------A-V---------S------------E---S-----------D-------------A------------Q----------------T---------------R---------------Q------------Q-------------A-----------------A------A----------IMRQHLN----E-EGVIQFLLKSFVDGEWRFN---VPVLWDQYPHIVGWEKIPAWDHPALFI-PGGNSPYVS--EQYRDDLLAQFPQARAH--V-IAGAG-HWVHAE--KPDAVLRAIRRYLNDH