@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00220: (2016-06-01 )
MGFLRKKTLRREFDEKLTEQLFKQKEEWNRQKKLVEKSLEPSAEVLYELKVAEAKYFFYLREAKQRNLKISRWK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------.........10-.....--....20........30----.......--..40-...---....--------..50......---..---------------60-........70...------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------MG
F
L
R
K
K
T
L
R
--
R
E
F
D
E
--
K
L
T
E
Q
L
F
K
Q
K
E
E
W
N
R
-----
Q
K
K
L
V
E
K
--SLE--
P
S
A
---
E
V
L
Y
--------
E
L
KVAE
A
K
Y
F
---
F
Y
---------------
L
R
-
E
A
K
QRNLKISRWK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
70.80
28%
-37
- C4 -
4R8A
3
FAN1_PSEAE
A:
[16-553]
LPEPF
Y
Y
L
H
N
F
R
A
V
L
A
W
I
G
E
RYADLLD
D
Q
E
R
A
F
I
A
A
F
A
E
LP
E
A
S
Q
A
L
L
V
R
M
V
M
RKGTLFREGKLAYAEIGD
T
R
A
A
V
Q
P
L
L
A
L
GWVDAQ
P
T
L
E
L
A
Q
L
F
G
L
L
K
K
D
E
L
S
--
Q
L
F
R
D
--
H
L
G
R
A
N
L
-------
R
-----
K
D
A
L
L
E
R
L
Q
P
L
F
--
P
E
A
---
R
R
L
A
--------
E
W
Q
A
D
F
A
E
P
V
---
Y
E
---------------
L
R
C
M
A
L
C
D
R
L
R
L
M
Y
F
G
NLWQDWS
E
F
V
L
A
D
L
GI
Y
R
Y
E
SVEFSADSRGFRL
R
A
D
V
D
A
Y
L
H
L
F
D
C
R
Q
R
F
D
L
GEP
L
E
E
L
L
A
G
LPGEPYAN
P
W
L
E
G
R
R
V
K
L
L
F
Q
F
A
Q
H
C
E
K
Q
RD
F
D
L
A
Q
R
L
Y
R
Q
SSHPG
A
R
L
R
A
I
R
S
L
E
R
G
ER
F
A
E
A
H
A
L
A
R
E
A
S
C
A
PES
D
A
E
R
Q
G
L
A
R
L
L
P
R
L
Q
G
K
L
G
L
P
R
Q
ARAAAPE
I
D
R
L
D
L
CLAFPSEPCS
V
E
W
A
V
R
E
H
L
EEPG
C
A
V
H
Y
V
E
NGL
I
N
S
L
F
G
L
L
C
W
EAIFAAIPGAFFHPFHSAPADLHSAD
F
R
Q
R
R
A
A
L
F
E
A
C
L
G
R
L
E
D
G
S
Y
R
D
A
I
R
C
R
Y
R
D
KFGLQSPFVYWELLG
E
E
L
L
E
Q
A
L
D
CLP
A
A
H
L
R
A
W
F
E
R
L
L
E
DIPGNRAGLPD
L
I
Q
F
WPAQR
R
Y
R
M
V
E
V
K
G
PGDRLQ
D
N
Q
L
R
W
L
Q
F
C
R
E
R
E
M
P
V
A
V
C
Y
V
5
PsiBlast_PDB
65.79
36%
-24
- C6 -
4HSE
-
CLPB_THET8
A:
[304-347]
-------------------------------------------------------------------------------------------------------------------
K
L
T
E
E
I
A
K
L
R
A
E
W
E
R
-----
E
R
E
I
L
R
K
--
L
R
E
--
A
Q
H
R
L
D
E
V
R
R
--------
E
I
E
L
A
E
R
Q
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
63.22
14%
-7
- C5 -
2H3J
-
?
A:
[1-75]
-----------------------------------------------------------------------------------------------------
M
S
A
L
Q
--
P
S
R
S
Y
--
R
I
T
G
--
Y
S
P
A
I
S
N
G
Y
-----
R
Q
R
L
F
S
M
--
G
L
L
--
P
G
A
---
A
L
R
V
VRIAPL
G
D
P
I
Q
V
E
T
R
Q
T
S
---
L
A
---------------
L
R
-
R
K
D
L
A
L
L
T
L
V
P
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.37
36%
-12
- C6 -
1QVR
-
CLPB_THET8
A:
[441-498]
-------------------------------------------------------------------------------------------------------------------
K
L
T
E
E
I
A
K
L
R
A
E
W
E
R
-----
E
R
E
I
L
R
K
--
L
R
E
--
A
Q
H
R
L
D
E
V
R
R
--------
E
I
E
L
A
E
R
Q
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.95
30%
3
- C6 -
4OJM
-
SYYM_NEUCR
X:
[2-49]
--------------------------------------------------------------------------------------------------------
L
R
--
R
E
F
G
P
--
K
Y
T
A
K
I
N
E
A
E
E
N
W
Q
A
-----
R
A
E
A
I
K
K
--
G
K
K
--
Q
N
T
---
W
D
L
F
--------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.50
30%
10
- C6 -
1Y42
-
SYYM_NEUCR
X:
[8-52]
----------------------------------------------------------------------------------------------------------------
P
--
K
Y
T
A
K
I
N
E
A
E
E
N
W
Q
A
-----
R
A
E
A
I
K
K
--
G
K
K
--
Q
N
T
---
W
D
L
F
--------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
55.88
14%
-30
- C6 -
2BA2
-
Y010_MYCPN
A:
[5-85]
------------------------------------------------------------------------------------------GTRYVT
H
K
Q
L
D
E
K
L
K
N
--
F
V
T
K
T
--
E
F
K
E
F
Q
T
V
V
M
E
S
F
A
V
-----
Q
N
Q
N
I
D
A
--
Q
G
E
--
Q
I
K
---
E
L
Q
V
--------
E
Q
K
A
Q
G
K
T
L
Q
---
L
I
---------------
L
E
-
A
L
Q
G
I
N
K
R
L
D
N
L
E
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.34
30%
16
- C6 -
2RKJ
-
SYYM_NEUCR
A:
[8-52]
----------------------------------------------------------------------------------------------------------------
P
--
K
Y
T
A
K
I
N
E
A
E
E
N
W
Q
A
-----
R
A
E
A
I
K
K
--
G
K
K
--
Q
N
T
---
W
D
L
F
--------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
52.61
37%
11
- C6 -
5AJ3
-
?
E:
[162-185]
------------------------------------------------------------------------------------------------------------
K
E
D
Q
E
--
K
V
E
A
D
M
V
Q
Q
R
E
E
W
D
R
-----
R
R
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.22
36%
72
- C2 -
3MTV
-
?
A:
[130-179]
---------------------------------------------------------------------------------------------------
L
Q
V
N
G
L
R
--
A
V
T
D
T
HG
P
I
V
I
Q
Y
F
S
V
K
E
S
W
I
R
-----
H
L
K
L
V
E
E
--
P
S
L
--
P
G
F
---
E
D
L
L
--------
R
I
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.19
16%
3
- C3 -
4V2B
-
UNC5D_RAT
A:
[47-152]
--------------------------------------------------------------------------------APGTLPHFIEEP
E
D
A
Y
I
I
K
S
N
P
I
A
L
R
--
C
K
A
R
P
--
A
M
-
Q
I
F
F
K
C
N
G
E
W
V
H
-----
Q
N
E
H
V
S
E
--
E
S
L
D
L
K
V
R
---
E
V
F
I
--------
N
V
T
R
Q
Q
V
E
D
F
---
H
G
PE
D
Y
W
C
Q
C
V
A
W
S
HL
G
T
S
-
K
S
R
K
A
S
V
R
I
A
Y
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.90
30%
-30
- C6 -
2DE0
-
FUT8_HUMAN
X:
[108-143]
-------------------------------------------------------------------------------------------------------------------------------------------------
L
G
--
K
D
H
---
E
I
L
R
--------
R
R
I
E
N
G
A
K
E
L
---
W
F
---------------
F
L
-
Q
S
E
L
K
K
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.34
24%
22
- C6 -
3NRX
-
PRC1_HUMAN
A:
[12-45]
---------------------------------------------------------------------------------------------------------------
H
K
--
E
L
F
E
G
V
Q
K
W
E
E
T
W
R
L
-----
F
L
E
F
E
R
K
--
A
S
D
--
P
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
46.28
28%
12
- C6 -
2WWB
-
RL35A_YEAST
N:
[2-33]
-------------------------------------------------------------------------------------------------
A
G
V
K
A
Y
E
L
R
--
T
K
S
K
E
--
Q
L
A
S
Q
L
V
D
L
K
K
E
L
A
E
-----
L
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
40.75
23%
29
- C6 -
3GXQ
2
?
A:
[5-28]
-------------------------------------------------------------------------------------------------
F
F
G
K
K
K
K
V
S
L
H
L
L
V
D
P
--
D
M
K
D
E
I
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
39.11
13%
55
* C5 *
4A54
-
DCP2_SCHPO
B:
[240-291]
------------------------------------------------------------------------------------------------
G
A
T
T
K
E
K
N
I
S
--
V
D
V
D
A
--
D
A
S
S
Q
L
L
S
L
L
K
S
S
T
A
-----
P
S
D
L
A
T
--------
P
Q
P
---
S
T
F
P
--------
Q
P
P
V
E
S
H
S
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.18
31%
79
- C6 -
1B0N
2
SINI_BACSU
B:
[18-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------------
M
V
-
E
A
K
E
A
N
I
S
P
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
36.32
16%
64
- C1 -
2LV2
2
A:
[1-85]
------------------------------------------------------------------------------------------------
M
G
H
H
H
H
H
H
S
H
--
M
G
D
G
E
--
G
A
G
V
L
G
L
S
A
S
A
E
C
H
L
CPVCG
E
S
F
A
S
K
G
--
A
Q
E
--
R
H
L
---
R
L
L
H
--------
A
A
Q
V
F
P
C
K
Y
C
PAT
F
Y
---------------
S
S
-
P
G
L
T
R
H
I
N
K
C
H
P
S
ENR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
32.84
18%
49
- C6 -
1VQ8
-
RL29_HALMA
V:
[2-33]
-------------------------------------------------------------------------------------------------
T
V
L
H
V
Q
E
I
R
--
D
M
T
P
A
--
E
R
E
A
E
L
D
D
L
K
T
E
L
L
N
-----
A
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
31.76
23%
73
* C6 *
4FTB
-
?
D:
[1-21]
----------------------------------------------------------------------------------------------------------------------------
A
S
M
W
E
R
-----
V
K
S
I
I
K
S
--
S
L
A
--
A
A
S
---
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------