@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02080: (2016-06-03 )
MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEFNGEYPDHDLIEELVNHYCFEHEI
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--------------------.--.10........20-..----------.--...-...30--..-....-----..-.40-.--------.---.---......50....----....60..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGAIERS--------------------G--
Y
T
FQP
E
F
S
V
V
RQ--N
G
----------
A
--
I
H
V
-
Y
HQG---E
F
-
V
E
E
I
-----
E
F
-
E
F--N--------G---E---YP
D
H
D
L
I
E
E
L
V
N
----
H
Y
C
FEHEI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
70.75
19%
-126
- C4 -
2OKA
-
?
A:
[45-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
--
G
G
----------
V
--
F
R
I
-
T
C
D
G
---
V
Q
-
V
---------
W
-
E
R
KA
D
--------
G
---
G
---
F
P
E
A
K
A
L
K
Q
R
V
R
----
D
R
I
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
66.24
16%
-75
* C5 *
4OK0
-
?
A:
[12-236]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS
E
Q
A
L
N
H
E
K
L
M
R
A
I
V
K
N
--------------------
L
--
A
D
---
T
P
M
V
L
K
G
--
E
T
----------
A
--
L
Y
L
G
Y
G
L
N
---
R
F
-
S
E
D
L
-----
D
F
-
D
C
--
H
--------
K
---
K
---
I
N
L
L
G
R
V
K
S
A
I
P
----
N
G
I
I
L
N
D
I
HIKKDTDS
V
G
R
Y
M
V
R
Y
A
T
KDNKE
E
Q
T
L
K
L
E
I
S
YRDAPKESE
V
N
V
I
EG
M
R
I
A
K
I
E
R
I
I
D
N
K
L
C
A
CFDGEHTRTK
A
R
D
L
F
D
L
H
F
L
A
K
HYEEHFN
L
D
L
A
S
R
L
K
D
F
S
KD
P
D
K
L
V
S
D
Y
L
V
D
V
K
L
DALLNQIMD
L
E
E
T
A
L
E
L
G
V
M
A
Q
L
I
H
K
K
L
E
K
LEHH-----------------------------------------
28
Fugue
66.05
18%
0
- C- -
1C8C
-
A:
[1--24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
T
V
--------------------
K
--
F
K
Y
K
G
E
E
K
Q
V
D
I
--
S
K
----------
I
--
K
K
V
-
W
R
V
G
---
K
----
M
I
-----
S
F
-
T
Y
--
D
E
G
GG
K
T
G
R
G
---
A
---
V
S
E
K
D
A
P
K
E
L
L
Q
----
M
L
A
K
Q
---KK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
63.27
14%
-144
- C4 -
2OJL
-
?
A:
[48-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
--
G
G
----------
V
--
F
R
I
-
H
Y
N
G
---
A
P
-
L
---------
W
-
D
R
EV
D
--------
G
---
G
---
F
P
E
A
K
V
L
K
Q
R
V
R
----
D
H
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
61.87
23%
-55
- C3 -
2KSS
-
CARS_MYXXA
A:
[21-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQDPS
L
I
I
C
H
D
V
D
G
A
--------------------
P
--
V
R
I
G
A
K
V
K
V
V
P
H
SE
D
G
----------
T
--
I
S
Q
-
R
F
L
G
---
Q
T
-
G
I
V
V
-----
G
L
-
V
F
--
D
--------
D
PAT
Q
---
Y
P
D
D
P
L
I
Q
V
L
V
E
G
L
G
E
D
L
F
F
P
E
E
L
ELAPE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
59.58
25%
-106
- C4 -
4M59
3
?
A:
[6-714]
PD
A
Q
V
L
V
L
A
I
S
S
HPLPT
L
A
A
F
L
A
S
R
R
D
E
L
L
R
AD
I
T
S
L
L
K
A
L
E
L
S
GH
W
E
W
A
L
A
L
L
R
W
A
G
K
E
GAAD
A
S
A
L
E
M
V
V
R
A
L
G
R
E
GQ
H
D
A
V
C
A
L
L
D
ETPLPPG
S
R
L
D
V
R
A
Y
T
T
V
L
H
A
L
S
R
A
GR
Y
E
R
A
L
E
L
F
A
E
L
R
R
Q
G
V
A
P
T
L
V
T
Y
N
V
V
L
D
V
Y
G
R
M
GRS
W
P
R
I
V
A
L
L
D
E
M
R
A
A
G
V
E
P
D
G
F
T
A
S
T
V
I
A
A
C
S
R
D
GL
V
D
E
A
V
A
F
F
E
D
L
K
A
R
GHAPS
V
V
T
Y
N
A
L
L
Q
V
F
G
KAGN
Y
T
E
A
L
R
V
L
G
E
M
E
Q
N
G
C
Q
P
D
A
V
T
Y
N
E
L
A
G
TE
E
A
A
R
C
L
D
T
M
A
SPN
A
F
T
Y
N
T
V
M
T
A
Y
G
N
V
GKV
D
E
A
L
A
L
F
D
Q
M
KKT
G
F
V
P
N
V
N
T
Y
N
L
V
L
G
M
L
G
K
K
SR
F
T
V
M
L
E
M
L
G
E
M
S
R
S
G
C
T
P
N
R
V
T
W
N
T
M
L
AVSGKRG
M
E
D
Y
V
T
R
V
L
E
G
M
R
S
S
G
V
E
L
S
R
D
T
Y
N
T
L
I
A
A
Y
G
R
C
GS
R
T
N
A
F
K
M
Y
N
E
M
T
S
A
G
F
T
P
C
I
T
T
Y
N
A
L
L
N
V
L
S
R
Q
--------------------
G
D
W
S
T
A
Q
S
I
V
S
K
M
R
T
--
K
G
F
K
P
N
E
Q
S
Y
S
L
L
--
L
Q
C
-
Y
A
K
G
GN
V
A
G
-
I
A
A
I
-----
E
N
-
E
V
--
Y
--------
G
---
S
GAV
F
P
S
W
V
I
L
R
T
L
V
I
----
A
N
F
K
C
R
R
L
D
G
M
E
T
A
F
Q
E
V
K
A
RG
Y
N
P
D
L
V
I
F
N
S
M
L
S
I
Y
A
K
N
GM
Y
S
K
A
T
E
V
F
D
S
I
K
R
S
G
L
S
P
D
L
I
T
Y
N
S
L
M
D
M
Y
A
K
C
SE
S
W
E
A
E
K
I
L
N
Q
L
K
C
SQTMKPD
V
V
S
Y
N
T
V
I
N
G
F
C
K
QGL
V
K
E
A
Q
R
V
L
S
E
M
V
A
D
G
M
A
P
C
A
V
T
Y
H
T
L
V
G
G
Y
S
S
LEMF
S
E
A
R
E
V
I
G
Y
M
V
QHGLKPMEL
T
Y
R
R
V
V
E
S
Y
C
R
AF
E
E
A
R
G
F
L
S
EVKAL
E
A
Y
I
E
D
A
1
HHSearch
59.51
33%
-106
- C4 -
4M8A
1
FTSH_THEMA
A:
[27-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
R
D
--
D
G
----------
V
--
L
R
V
-
Y
T
K
D
---
G
R
-
V
Y
E
V
-----
D
A
-
P
W
--
A
--------
V
--------
N
D
S
Q
L
I
E
K
L
V
S
----
K
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
57.21
14%
-67
- C4 -
2M6M
2
DOA10_YEAST
A:
[1-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
N
E
E
T
D
T
A
T
F
N
DDAPS
G
A
T
C
RICRGE
A
--
T
E
D
N
P
L
F
H
P
C
K
C
--
R
G
----------
S
--
I
K
Y
-
M
H
E
S
---
C
L
-
L
E
W
V
-----
A
S
K
N
I
--
D
--------
I
---
S
---
K
P
G
A
D
V
K
C
D
I
C
H
----
Y
P
-
I
Q
F
K
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
56.40
16%
-129
- C4 -
1MG4
-
DCLK1_HUMAN
A:
[13-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
----------
A
K
K
V
R
F
-
Y
R
N
G
---
D
R
Y
F
K
G
I
-----
V
Y
-
A
I
--
S
--------
P
D--
R
---
F
R
S
F
E
A
L
L
A
D
L
T
----
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
56.16
16%
-91
- C4 -
2P0G
-
?
A:
[43-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
--
G
G
----------
R
--
F
E
I
-
F
C
N
G
---
V
Q
-
I
W
E
R
-----
K
---
Q
--
E
--------
G
---
G
---
F
P
E
A
K
V
L
K
Q
R
V
R
----
D
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
55.11
18%
-179
- C4 -
4RV7
3
DACA_LISMO
A:
[139-173]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
S
E
E-
T
G
----------
G
--
I
S
L
-
T
K
G
G
---
E
L
-
F
R
D
V
-----
S
--------------------------
E
E
E
L
H
K
I
L
L
----
K
E
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
54.89
18%
-87
- C4 -
3DEX
-
?
A:
[51-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
T
--
G
G
----------
V
--
F
V
V
-
R
V
D
D
---
E
V
-
V
W
D
R
-----
R
------
E
--------
Q
---
G
---
F
P
E
P
T
A
V
K
R
L
V
R
----
D
R
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
53.22
20%
-31
* C4 *
3SHG
1
VBHA_BARSR
B:
[1-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLS
E
E
E
I
E
Y
R
--------------------
R
--
R
D
A
R
N
A
L
A
S
Q
R
L
--
E
G
---------------
L
-
E
P
D
P
---
Q
V
-
V
A
Q
M
-----
E
R
-
V
V
--
V
--------
G
---
E
---
L
E
T
S
D
V
I
K
D
L
M
E
----
R
I
K
R
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.08
17%
-102
- C4 -
2NPB
-
SELW_MOUSE
A:
[41-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
Q
V
--
T
G
----------
F
--
F
E
V
-
T
V
A
G
---
K
L
-
V
---------
H
-
S
K
KR
G
--------
D
---
G
---
Y
V
D
T
E
S
K
F
R
K
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
50.92
24%
-100
- C4 -
2LJK
-
MIEN1_HUMAN
A:
[62-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
--
T
G
----------
A
--
F
E
I
-
E
I
N
G
---
Q
L
-
V
---------
F
-
S
K
LE
N
--------
G
---
G
---
F
P
Y
E
K
D
L
I
E
A
I
R
----
R
A
S
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
48.09
13%
-61
- C4 -
2FA8
-
?
A:
[45-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
--
G
G
----------
L
--
F
E
I
-
T
V
D
G
---
T
I
-
I
W
E
R
--------
K
R
--
D
--------
G
---
G
---
F
P
G
P
K
E
L
K
Q
R
I
R
----
D
L
I
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.84
19%
-137
- C4 -
4HT4
-
?
A:
[78-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
S
---
Q
V
-
A
R
E
I
-----
I
I
-
G
L
--
P
--------
N
---
E
---
F
D
P
N
S
N
I
E
-
L
A
K
----
E
F
A
E
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
44.04
8%
-50
- C4 -
4V0B
-
FTSH_ECOLI
A:
[8-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--------------------
K
--
V
D
Y
S
T
F
L
Q
E
V
N
N
--
D
Q
----------
V
--
R
E
A
-
R
I
N
G
---
R
E
-
I
N
V
T
K
KDS
N
R
Y
-
T
T
--
Y
--------
I
---
P
---
V
Q
D
P
K
L
L
D
N
L
L
T
----
K
N
V
K
V
V
G
E
P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
43.20
19%
-63
- C4 -
2KKE
-
?
A:
[1-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
G
R
R
P
G
--------------------
G
--
G
L
K
D
T
K
P
V
V
V
R
L
-----------------------------
Y
-
P
D
E
I
-----
E
--
A
L
--
K
--------
S
---
R
---
V
P
A
N
T
S
M
S
A
Y
I
R
----
R
I
I
L
N
H
L
E
DE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
42.73
24%
-104
* C6 *
2KD2
-
FAIM1_MOUSE
A:
[108-128]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
R
V
V
L
E
--
K
D
----------
T
--
M
D
V
-
W
C
N
G
---
Q
K
-
M
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------