@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2117: (2016-04-01 )
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

COA_A_5(1YVK)
YVBK_BACSU
[Raw transfer]




COA_A_5(1YVK)
YVBK_BACSU
[Raw transfer]




COA_A_5(1YVK)
YVBK_BACSU
[Raw transfer]




COA_C_7(1YVK)
YVBK_BACSU
[Raw transfer]




COA_B_6(1YVK)
YVBK_BACSU
[Raw transfer]




COA_D_8(1YVK)
YVBK_BACSU
[Raw transfer]




EDO_A_8(3D8P)
?
[Raw transfer]




59 Fugue 83.6034%-121 - C1 -1YVK 7.3 YVBK_BACSU
39 HHSearch 82.8538%-128 - C1 -1YVK 7.4 YVBK_BACSU
2 PsiBlast_PDB 80.7238%-130 - C1 -1YVK 7.4 YVBK_BACSU
22 PsiBlast_CBE 77.3639%-123 - C1 -1YVK 5.2 YVBK_BACSU
21 PsiBlast_CBE 76.6439%-122 - C1 -1YVK 5.0 YVBK_BACSU
23 PsiBlast_CBE 74.8739%-122 - C1 -1YVK 5.8 YVBK_BACSU
7 PsiBlast_PDB 70.1732%-123 - C1 -3D8P - ? -
55 HHSearch 62.2528%-144 - C1 -3D8P 3.0 ?
17 PsiBlast_PDB 60.5721%-140 - C1 -2FIA - ? -
60 Fugue 59.9817%-105 - C1 -2FIA - ? -
50 HHSearch 59.8018%-116 - C1 -3BLN - ? -
51 HHSearch 59.7625%-139 - C1 -2AE6 - ? -
46 HHSearch 59.5418%-140 - C1 -2FIA - ? -
41 HHSearch 59.2926%-127 - C1 -2OB0 - NAA50_HUMAN -
45 HHSearch 58.7423%-140 - C1 -3PP9 - ? -
43 HHSearch 57.3117%-134 - C1 -3KKW - ? -
42 HHSearch 56.4726%-140 * C1 *2CNT - ? -
67 Fugue 55.6921% -92 - C1 -2PSW - NAA50_HUMAN -
3 PsiBlast_PDB 55.4121%-140 - C1 -4PV6 - ? -
58 HHSearch 55.2916%-132 - C1 -3H4Q - ? -