@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00071_RAP1A_: (2014-08-20 )
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GCP_A_3(4DST)
RASH_HUMAN
[Raw transfer]




GNP_A_3(3OES)
REBL1_HUMAN
[Raw transfer]




GTP_A_5(1C1Y)
RAP1A_HUMAN
[Raw transfer]




GCP_A_2(4DSN)
RASK_HUMAN
[Raw transfer]




GNP_A_5(1GUA)
RAP1A_HUMAN
[Raw transfer]




GTP_R_5(3RAP)
RAP2A_HUMAN
[Raw transfer]




GNP_A_5(1GUA)
RAP1A_HUMAN
[Raw transfer]




GSP_A_2(4DSO)
RASK_HUMAN
[Raw transfer]




GSP_A_3(4DXA)
RAP1B_HUMAN
[Raw transfer]




GNP_B_6(4HDQ)
RAP1B_HUMAN
[Raw transfer]




GCP_A_3(1JAI)
RASH_HUMAN
[Raw transfer]




GTP_A_3(2RAP)
RAP2A_HUMAN
[Raw transfer]




GDP_D_7(3BRW)
RAP1B_HUMAN
[Raw transfer]




GDP_A_3(3KUC)
RAP1A_HUMAN
[Raw transfer]




GDP_A_2(4DSU)
RASH_HUMAN
[Raw transfer]




GDP_A_6(3CON)
RASN_HUMAN
[Raw transfer]




DBG_A_3(1CLU)
RASH_HUMAN
[Raw transfer]




GDP_A_2(3KKQ)
RASM_MOUSE
[Raw transfer]




GDP_A_4(1KAO)
RAP2A_HUMAN
[Raw transfer]




GDP_X_3(2CE2)
RASH_HUMAN
[Raw transfer]




GDP_A_4(4LRW)
RASK_HUMAN
[Raw transfer]




GDP_A_2(4EPR)
RASK_HUMAN
[Raw transfer]




GDP_A_4(2A9K)
RALA_HUMAN
[Raw transfer]




GDP_A_4(4LYJ)
RASK_HUMAN
[Raw transfer]




GDP_A_3(2FN4)
RRAS_HUMAN
[Raw transfer]




GDP_A_5(1U8Z)
RALA_SAGOE
[Raw transfer]




GDP_A_3(2BOV)
RALA_HUMAN
[Raw transfer]




GDP_A_12(3C5C)
RASLC_HUMAN
[Raw transfer]




GNP_A_3(3Q72)
RAD_HUMAN
[Raw transfer]




GDP_A_9(2GF0)
DIRA1_HUMAN
[Raw transfer]




GDP_A_2(2G3Y)
GEM_HUMAN
[Raw transfer]




GDP_A_11(2NZJ)
REM1_HUMAN
[Raw transfer]




XY2_X_4(2CE2)
RASH_HUMAN
[Raw transfer]




21F_A_3(4LYJ)
RASK_HUMAN
[Raw transfer]




3 PsiBlast_PDB 96.5698%-117 - C1 -3KUC 9.5 RAP1A_HUMAN
1 PsiBlast_PDB 95.75100%-114 - C1 -1C1Y 10.3 RAP1A_HUMAN
24 Fugue 95.3498%-114 - C1 -1GUA 10.5 RAP1A_HUMAN
8 PsiBlast_PDB 95.0597%-119 - C1 -4DXA 9.6 RAP1B_HUMAN
5 PsiBlast_PDB 93.7098%-114 - C1 -3BRW 8.2 RAP1B_HUMAN
7 PsiBlast_PDB 92.7698%-115 - C1 -4HDQ 9.2 RAP1B_HUMAN
37 HHSearch 83.3655%-108 - C1 -4DSU 8.5 RASH_HUMAN
16 PsiBlast_PDB 82.2366%-105 - C1 -2RAP 10.0 RAP2A_HUMAN
14 PsiBlast_PDB 81.7366%-105 - C1 -3RAP 10.9 RAP2A_HUMAN
15 PsiBlast_PDB 81.4466%-104 - C1 -1KAO 9.4 RAP2A_HUMAN
20 PsiBlast_PDB 79.7355%-108 - C1 -1JAI 9.1 RASH_HUMAN
19 PsiBlast_PDB 79.1655%-109 - C1 -1CLU 8.8 RASH_HUMAN
44 HHSearch 78.8856%-112 - C1 -2CE2 8.3 RASH_HUMAN
18 PsiBlast_PDB 78.2456%-107 - C1 -4LYJ 8.6 RASK_HUMAN
13 PsiBlast_PDB 78.1456%-104 - C1 -4EPR 8.7 RASK_HUMAN
57 HHSearch 77.0051%-105 - C1 -2FN4 8.3 RRAS_HUMAN
9 PsiBlast_PDB 76.3857%-102 - C1 -4DSO 10.1 RASK_HUMAN
40 HHSearch 76.1853%-103 - C1 -3KKQ 8.3 RASM_MOUSE
50 HHSearch 75.3351% -95 - C1 -2A9K 9.0 RALA_HUMAN
39 HHSearch 75.3052% -96 - C1 -2BOV 7.9 RALA_HUMAN
36 HHSearch 75.2952%-103 - C1 -1U8Z 8.6 RALA_SAGOE
12 PsiBlast_PDB 74.9357%-102 - C1 -4DSN 9.5 RASK_HUMAN
10 PsiBlast_PDB 74.9357%-105 - C1 -4DST 9.5 RASH_HUMAN
55 HHSearch 74.4756%-106 * C1 *3CON 9.0 RASN_HUMAN
17 PsiBlast_PDB 74.4356%-117 - C1 -4LRW 7.2 RASK_HUMAN
46 HHSearch 69.7844%-104 - C1 -2GF0 8.1 DIRA1_HUMAN
52 HHSearch 65.1534%-108 - C1 -2NZJ 7.4 REM1_HUMAN
58 HHSearch 62.2934%-101 - C1 -3C5C 7.6 RASLC_HUMAN
48 HHSearch 58.6635% -94 - C1 -3OES 8.9 REBL1_HUMAN
42 HHSearch 56.2935% -88 - C1 -2G3Y 7.5 GEM_HUMAN
47 HHSearch 54.9334%-109 - C1 -3Q72 7.1 RAD_HUMAN