@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0032: (2016-03-11 )
LDIQESVIGIDLGGTKILIGEVTKDGEVLNSKSYPSNTENQTKATETLLKVLADYTQNIGFIAPKQTGIGVGLVGRVDHKSGVWLEIEPGKSNPTPLAGILEAKTGLPVSLGNDVVCATMAEKQFGWGRETNDFIYLNVGTGLAAGFVVDGRITQGGHFNAGEVGHAVVDIHSDVLCGCGRRGCVERLASGLGIKEEALRHLNSYPTSILAETQTELTGKMVLHAAEQKDELAEKIIDNATFQLANLIMNLVRTTDPECVILGGGVTRNEHFFQKIQDNLQSNTIRFVTKGVVRSKLEKDKVGLIGAAVIGMRLGNEGGKE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BMX_A_2(2YI1)

[Raw transfer]



BM3_A_2(2YHY)

[Raw transfer]



BGC_A_4(3VGL)
?
[Raw transfer]



GOL_A_6(1XC3)
SCRK_BACSU
[Raw transfer]
22 HHSearch 90.8428% -90 - C1 -2QM1 - ? -
24 HHSearch 89.5129% -91 - C1 -3VOV - ? -
9 PsiBlast_PDB 89.2128% -96 - C1 -3VGK - ? -
11 PsiBlast_PDB 88.7828% -95 - C1 -3VGM - ? -
23 HHSearch 88.4628% -86 * C1 *3VGL - ? -
10 PsiBlast_PDB 88.1928% -92 - C1 -3VGL 5.5 ?
2 PsiBlast_PDB 88.1327% -92 - C1 -1Z05 - ? -
14 PsiBlast_PDB 87.6730% -90 - C1 -3VOV - ? -
46 Fugue 87.1724% -85 - C1 -1Z05 - ? -
25 HHSearch 85.6225% -86 - C1 -1Z05 - ? -
1 PsiBlast_PDB 85.1930% -74 - C1 -2QM1 - ? -
8 PsiBlast_PDB 83.2327% -80 - C1 -4HTL - BGLK_LISMO -
26 HHSearch 83.1328% -83 - C1 -2AA4 - NANK_ECOLI -
29 HHSearch 82.3624% -86 - C1 -2AP1 - NAGK_SALTY -
17 PsiBlast_PDB 81.7823% -89 - C1 -2AP1 - NAGK_SALTY -
3 PsiBlast_PDB 81.5231% -80 - C1 -2AA4 - NANK_ECOLI -
21 PsiBlast_CBE 80.6631% -79 - C1 -2AA4 - NANK_ECOLI -
7 PsiBlast_PDB 80.6127% -91 - C1 -2YI1 3.6
6 PsiBlast_PDB 80.1827% -92 - C1 -2YHY 3.7
4 PsiBlast_PDB 80.0726% -76 - C1 -4DB3 - NAGK_VIBVU -