@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2072: (2016-03-31 )
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_B_4(2VT3)
REX_BACSU
[Raw transfer]




NAD_A_3(2VT2)
REX_BACSU
[Raw transfer]




NAD_A_8(2DT5)
REX_THET8
[Raw transfer]




NAD_B_12(2DT5)
REX_THET8
[Raw transfer]




NAD_A_8(2DT5)
REX_THET8
[Raw transfer]




NAD_A_5(3IKT)
REX_THET2
[Raw transfer]




NAD_B_4(2VT2)
REX_BACSU
[Raw transfer]




NAD_A_3(3KEO)
REX_STRA3
[Raw transfer]




NAD_A_3(3KEO)
REX_STRA3
[Raw transfer]




NAD_A_3(3KEQ)
REX_STRA3
[Raw transfer]




NAD_A_4(3KET)
REX_STRA3
[Raw transfer]




NAD_B_9(3KEO)
REX_STRA3
[Raw transfer]




21 PsiBlast_CBE 90.5164%-126 - C6 -2VT3 6.7 REX_BACSU
45 HHSearch 89.0566%-160 - C6 -2VT3 6.1 REX_BACSU
22 PsiBlast_CBE 88.6464%-122 - C6 -2VT2 6.4 REX_BACSU
44 HHSearch 87.2946%-133 - C6 -3KEO 9.8 REX_STRA3
1 PsiBlast_PDB 86.7164%-150 - C6 -2VT2 5.2 REX_BACSU
2 PsiBlast_PDB 86.3964%-147 - C6 -2VT3 6.1 REX_BACSU
3 PsiBlast_PDB 85.8947%-133 - C6 -3KEO 9.8 REX_STRA3
63 Fugue 85.7764%-144 - C6 -2VT3 6.1 REX_BACSU
5 PsiBlast_PDB 83.9947%-133 - C6 -3KET 8.9 REX_STRA3
23 PsiBlast_CBE 83.9247%-136 - C6 -3KEQ - REX_STRA3 -
24 PsiBlast_CBE 83.3347%-134 - C6 -3KEO 9.2 REX_STRA3
32 PsiBlast_CBE 82.3636%-132 - C6 -3WG9 - ? -
4 PsiBlast_PDB 82.3347%-146 - C6 -3KEQ 8.2 REX_STRA3
46 HHSearch 82.0536%-134 - C6 -3WG9 - ? -
28 PsiBlast_CBE 81.4036%-129 - C6 -3WGI - ? -
29 PsiBlast_CBE 81.1736%-135 - C6 -3WGH - ? -
12 PsiBlast_PDB 81.1436%-133 - C6 -3WGH - ? -
33 PsiBlast_CBE 81.0036%-123 - C6 -3WG9 - ? -
13 PsiBlast_PDB 81.0036%-131 - C6 -3WGI - ? -
30 PsiBlast_CBE 80.9336%-129 - C6 -3WGG - ? -
43 HHSearch 79.6735%-129 - C6 -2DT5 8.8 REX_THET8
34 PsiBlast_CBE 79.4334%-130 - C6 -2DT5 8.9 REX_THET8
14 PsiBlast_PDB 78.7334%-122 - C6 -2DT5 8.8 REX_THET8
7 PsiBlast_PDB 78.4435%-123 - C6 -3IKT 9.5 REX_THET2