@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0050: (2015-11-28 )
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLSVESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCDGGVPDPWYTGDFEETYRLVNDGCKQWLTLINNSRD

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




PMS_A_5(4Z9A)
?
[Raw transfer]




EPE_C_3(1D1P)
PPAL_YEAST
[Raw transfer]




B85_A_2(4Z9B)
?
[Raw transfer]




MES_B_2(5PNT)
PPAC_HUMAN
[Raw transfer]




EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]




EPE_D_4(1D1P)
PPAL_YEAST
[Raw transfer]




ADE_B_6(1D2A)
PPAL_YEAST
[Raw transfer]




21 PsiBlast_CBE 95.2640% -99 - C9 -4ETM - YFKJ_BACSU -
1 PsiBlast_PDB 94.5840% -99 - C9 -4ETM - YFKJ_BACSU -
6 PsiBlast_PDB 90.0438% -88 - C9 -5PNT 3.7 PPAC_HUMAN
7 PsiBlast_PDB 88.9138% -89 - C9 -3N8I - PPAC_HUMAN -
3 PsiBlast_PDB 88.5038% -88 - C9 -4Z99 - ? -
5 PsiBlast_PDB 88.2338% -87 - C9 -4Z9B 5.9 ?
4 PsiBlast_PDB 88.1838% -90 - C9 -4Z9A 4.5 ?
26 PsiBlast_CBE 87.6633% -95 - C9 -4LRQ - ? -
9 PsiBlast_PDB 87.4333% -94 - C9 -4LRQ - ? -
30 PsiBlast_CBE 87.2636% -99 - C9 -1D2A 3.5 PPAL_YEAST
25 PsiBlast_CBE 87.0633% -97 - C9 -4LRQ - ? -
54 HHSearch 86.4933% -88 - C9 -1D1Q 4.8 PPAL_YEAST
28 PsiBlast_CBE 86.2736%-101 - C9 -1D1P 3.1 PPAL_YEAST
27 PsiBlast_CBE 86.0533% -91 - C9 -4LRQ - ? -
12 PsiBlast_PDB 86.0036% -97 - C9 -1D1Q 4.8 PPAL_YEAST
29 PsiBlast_CBE 85.6236% -97 - C9 -1D1Q - PPAL_YEAST -
8 PsiBlast_PDB 85.5535% -91 - C9 -2P4U - PPAC_MOUSE -
11 PsiBlast_PDB 85.0535% -87 - C9 -1XWW - PPAC_HUMAN -
57 HHSearch 85.0125%-110 - C9 -2FEK - WZB_ECOLI -
13 PsiBlast_PDB 84.8836% -92 - C9 -1D2A - PPAL_YEAST -
10 PsiBlast_PDB 84.1236% -96 - C9 -1D1P 3.6 PPAL_YEAST
14 PsiBlast_PDB 81.4433% -86 - C9 -1DG9 5.0 PPAC_BOVIN