@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0197_1: (2016-03-13 )
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN
Atome Classification :
(17 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....----....10--------...----------......20.........30.....----.-..40----.----........50.......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKN
D
----
L
L
V
M
S
---------
V
V
Y
----------
I
L
T
S
V
I
M
-
F
Y
I
N
G
L
S
K
Q
F
F
T
Y
V
V
G
----
F
-
P
I
I
-----
Y
----
F
G
Y
I
C
L
V
N
L
I
K
K
RSRNN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
75.85
30%
-104
- C7 -
4EXK
2
MALE_ECOLI
A:
[4-478]
A
K
I
E
E
G
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
D
TG
I
K
V
T
V
E
H
P
DK
L
E
E
K
F
P
Q
VAATGDGPD
I
I
F
W
AHDR
F
G
G
Y
A
Q
S
GLLA
E
I
T
P
A
A
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
L
I
Y
N
KDLLPNPPKTWEE
I
P
A
L
D
K
E
L
K
A
K
GKSALMFNLQEPYFT
W
P
L
I
A
A
D
G
G
Y
A
F
KYAAGKYDIKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
S
AVN
Y
G
V
T
V
L
P
T
F
KGQPSKPFVGVL
S
A
G
I
NAASPN
K
E
L
A
K
E
F
L
E
NYLLT
D
E
G
L
E
A
V
N
K
D
KPLGAVAL
K
S
Y
E
E
E
L
AKD
P
R
I
A
A
T
M
E
N
A
Q
K
G
EIMPNIPQ
M
S
A
F
W
Y
A
V
R
T
A
V
I
N
A
A
S
GRQT
V
D
A
A
L
A
A
A
Q
T
N
A
A
AN
T
P
S
P
D
----
L
T
V
M
S
---------
I
D
K
----------
S
V
L
S
-------
P
G
E
S
A
T
I
T
T
I
V
K
D
--------
I
-----
D
----
G
N
P
V
N
E
V
H
I
N
K
T
V
A
R
E
N
LK
G
L
W
D
Y
G
P
LKKENVPG
K
Y
T
Q
V
I
T
Y
RGH
S
N
E
R
I
D
I
S
F
K
Y
AM
S
F
T
K
E
I
S
I
R
G
R
LS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
70.30
20%
-156
* C9 *
1W3B
-
OGT1_HUMAN
B:
[1-388]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMELAHREYQAGDFEAAERHCMQ
L
W
R
Q
E
----
P
D
N
T
G
---------
V
L
L
----------
L
L
S
S
I
H
F
Q
C
R
R
L
D
R
S
A
H
F
S
T
L
A
I
K
----
Q
N
P
L
L
-----
A
----
E
A
Y
S
N
L
G
N
V
Y
K
E
R
G
Q
L
Q
EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD
1
PsiBlast_PDB
65.38
39%
-159
- C9 -
4M64
-
MELB_SALTY
A:
[229-282]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
D
QL
S
C
L
L
G
M
A
---------
L
A
Y
----------
N
I
A
S
N
I
----
I
N
G
F
A
I
Y
Y
F
T
Y
V
I
G
DADL
F
-
P
-
Y
-----
Y
----
L
S
Y
A
G
A
A
N
L
L
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
59.21
8%
-237
- C8 -
1NY4
-
RS28_PYRHO
A:
[1-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
E
D
E
----
G
Y
P
A
E
---------
V
I
E
II
G
R
T
G
TTGD
V
T
Q
V
K
V
R
-
I
L
E
G
R
D
K
G
R
V
I
R
R
N
V
R
----
G
-
P
V
R
-----
V
----
G
D
I
L
I
L
R
E
T
E
R
E
A
R
E
I
K
SRR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
53.27
35%
-187
- C10 -
3CIT
2
?
A:
[98-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
V
L
L
----
L
-
P
L
R
G
ADEG
S
----
F
G
T
L
V
L
A
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
52.20
24%
-122
- C9 -
4R2F
1
?
A:
[38-431]
----------------------------------------------------------------------------------------------------------------------------G
A
I
K
F
W
D
M
PWAT
P
A
Y
N
D
A
A
K
K
I
A
E
G
FSGAN
S
K
A
T
Y
Q
I
I
Q
WNN
F
Y
Q
T
F
S
S
A
I
A
S
KTGPA
V
S
T
G
G
GF
Q
A
F
Q
F
E
E
Q
GQIAYA
D
K
V
I
E
K
L
K
S
N
GQFDDFLPGVVEPFKTSKGYV
A
V
P
W
Q
L
D
I
R
P
L
W
Y
R
K
S
L
F
E
K
A
GVGVPTD
W
A
S
L
L
E
A
G
K
K
L
K
G
V
GAVG
F
A
T
G
SGAGNN
I
G
N
H
L
M
I
M
M
M
L
N
N
GGGVFTKDGELDVLN
D
R
N
V
E
A
V
E
F
L
L
E
L
V
S
N
GVIDPAAVSYT
T
D
N
L
N
A
Q
W
K
D
SKAA
Y
G
M
L
T
L
G
V
P
E
R
V
G
D
T
S
G
D
----
I
V
V
A
S
P
IAGPHG
D
K
A
A
L
----------
I
F
P
N
N
I
M
-
M
Y
T
N
T
P
S
Q
E
A
S
E
E
F
V
V
----
Y
-
Y
L
G
-----
K
---------
L
K
E
L
W
Q
Q
K
L
M
N
A
LPVF
K
S
I
T
E
M
P
E
F
T
A
D
P
N
N
V
K
I
V
N
EYVPIAKTFASQGTALS
A
N
L
A
A
L
D
GG
Q
A
L
N
Q
F
T
Q
T
V
L
T
GKTD
A
K
S
A
L
T
A
F
D
T
G
L
K
S
V
LKK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
49.54
18%
-228
* C10 *
3O5Y
-
?
A:
[96-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
L
V
----
I
-
P
I
Y
-----
S
KNKR
V
G
V
L
S
I
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
40.72
19%
-82
- C9 -
3HGF
-
?
A:
[7-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PMVK
E
I
E
K
K
I
E
N
I
V
T
KIDKKKYIY
D
N
M
K
K
L
L
N
E
I
A
E
I
E
K
D
K
T
S
L
E
E
V
K
----
N
I
N
M
S
---------
Y
G
K
----------
S
L
N
K
L
F
L
-
E
K
I
K
K
K
S
E
N
M
I
K
------------
S
-----
M
----
E
K
Y
I
K
D
L
D
E
I
K
E
Q
S
P
K
A
E
MNT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
37.82
21%
-97
- C9 -
1EHK
2
COXA_THET8
C:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
K
P
----
K
G
A
L
A
---------
V
I
L
----------
V
L
T
L
T
I
L
-
V
F
W
L
G
V
Y
A
V
F
F
A
R
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.74
27%
-140
- C6 -
1RLI
2
YWQN_BACSU
A:
[73-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
L
I
F
A
----
T
-
P
I
Y
-----
W
----
F
G
M
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
34.95
15%
-55
- C9 -
1BH1
1
?
?:
[1-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
G
A
V
----
L
-
K
V
L
-----
T
----
T
G
L
P
A
L
I
S
W
I
K
R
K
R
Q
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.40
28%
-85
- C5 -
3V42
-
FLCN_HUMAN
A:
[548-558]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
K
-
F
W
M
T
G
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
25.89
18%
-49
- C1 -
3ZDQ
1
ABCBA_HUMAN
A:
[152-162]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
I
S
M
M
-
F
F
V
S
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.39
35%
-33
- C9 -
1WVT
-
?
A:
[137-153]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
H
A
-
K
Y
L
N
R
L
S
S
L
L
F
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
18.63
10%
-8
- C4 -
3WMG
1
?
A:
[159-168]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
V
A
-
F
I
F
A
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
17.10
42%
55
- C2 -
2FPN
-
YWMB_BACSU
A:
[204-214]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
T
V
G
----
T
-
P
I
V
-----
T
----
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
11.05
56%
139
- C3 -
1MZW
-
PRP4_HUMAN
B:
[114-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
----
E
-
P
I
T
-----
L
----
F
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------