@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1627: (2016-03-26 )
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKLAMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFAHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_A_2(1UJP)
TRPA_THET2
[Raw transfer]




IPL_A_6(1WXJ)
TRPA_THET2
[Raw transfer]




EDO_A_3(3NAV)
TRPA_VIBCH
[Raw transfer]




2 PsiBlast_PDB 95.9234%-154 - C1 -2EKC - TRPA_AQUAE -
22 HHSearch 94.2634%-147 - C1 -2EKC - TRPA_AQUAE -
27 HHSearch 90.8735%-133 * C1 *1RD5 - TRPA_MAIZE -
1 PsiBlast_PDB 89.5436%-135 - C1 -1RD5 - TRPA_MAIZE -
8 PsiBlast_PDB 88.5234%-127 - C1 -2DZP - TRPA_PYRFU -
3 PsiBlast_PDB 88.1536%-132 - C1 -1TJR - TRPA_MAIZE -
44 Fugue 86.3627%-139 - C1 -2TYS - TRPA_SALTY -
14 PsiBlast_PDB 85.9234%-129 - C1 -2DZV - TRPA_PYRFU -
13 PsiBlast_PDB 85.3334%-129 - C1 -2DZT - TRPA_PYRFU -
21 PsiBlast_CBE 85.2836%-135 - C1 -1RD5 - TRPA_MAIZE -
26 HHSearch 84.9828%-131 - C1 -3NAV 2.7 TRPA_VIBCH
43 Fugue 84.8532%-136 - C1 -1GEQ - TRPA_PYRFU -
23 HHSearch 84.8028%-132 - C1 -3VND - ? -
9 PsiBlast_PDB 84.7634%-125 - C1 -2DZU - TRPA_PYRFU -
7 PsiBlast_PDB 84.6034%-125 - C1 -2DZS - TRPA_PYRFU -
10 PsiBlast_PDB 83.4634%-124 - C1 -2DZW - TRPA_PYRFU -
12 PsiBlast_PDB 83.3534%-129 - C1 -1WDW - TRPA_PYRFU -
5 PsiBlast_PDB 82.7334%-126 - C1 -2DZX - TRPA_PYRFU -
11 PsiBlast_PDB 82.3634%-130 - C1 -1GEQ - TRPA_PYRFU -
15 PsiBlast_PDB 80.4032%-157 - C1 -1UJP 3.2 TRPA_THET2
16 PsiBlast_PDB 78.3832%-152 - C1 -1WXJ 5.4 TRPA_THET2