@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2759: (2016-04-07 )
MEITIVKGDITEQEVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINSEVV

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AR6_A_3(4IQY)
MACD2_HUMAN
[Raw transfer]




AR6_B_5(4IQY)
MACD2_HUMAN
[Raw transfer]




ADP_A_2(4D86)

[Raw transfer]




MES_A_3(1HJZ)
Y1521_ARCFU
[Raw transfer]




MES_A_2(1VHU)
Y1521_ARCFU
[Raw transfer]




MES_A_2(1SPV)
YMDB_ECOLI
[Raw transfer]




BCN_A_3(3GQE)
POLN_EEVVP
[Raw transfer]




EDO_A_4(4JLL)
?
[Raw transfer]




1 PsiBlast_PDB 97.3051%-127 - C2 -1SPV 2.9 YMDB_ECOLI
2 PsiBlast_PDB 92.6547%-124 - C2 -4IQY 10.8 MACD2_HUMAN
57 Fugue 91.4646%-125 - C2 -2X47 - MACD1_HUMAN -
21 PsiBlast_CBE 91.3447%-123 - C2 -4IQY 10.8 MACD2_HUMAN
66 HHSearch 88.5646%-120 * C2 *2X47 - MACD1_HUMAN -
3 PsiBlast_PDB 86.5947%-121 - C2 -2X47 - MACD1_HUMAN -
4 PsiBlast_PDB 83.9232%-137 - C2 -3VFQ - -
6 PsiBlast_PDB 83.8932%-132 - C2 -3Q6Z - -
5 PsiBlast_PDB 83.4132%-133 - C2 -4D86 4.5
69 HHSearch 83.2632%-124 - C2 -3Q6Z - -
8 PsiBlast_PDB 81.3733%-124 - C2 -4UML - GDAP2_HUMAN -
70 HHSearch 78.9126%-116 - C2 -3Q71 - -
14 PsiBlast_PDB 78.5827%-121 - C2 -3Q71 - -
74 HHSearch 76.9032%-113 - C2 -1VHU 3.6 Y1521_ARCFU
28 PsiBlast_CBE 76.5431%-127 - C2 -1HJZ - Y1521_ARCFU -
58 Fugue 76.5130%-109 - C2 -1HJZ 3.4 Y1521_ARCFU
29 PsiBlast_CBE 76.2431%-127 - C2 -1HJZ - Y1521_ARCFU -
11 PsiBlast_PDB 75.9329%-124 - C2 -2FXK - H2AY_HUMAN -
56 Fugue 75.5126%-123 - C2 -1ZR5 - H2AY_HUMAN -
10 PsiBlast_PDB 75.2329%-122 - C2 -1ZR3 - H2AY_HUMAN -
24 PsiBlast_CBE 60.0039%-109 - C2 -4JLL 3.1 ?