@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00656_CASP6_: (2014-09-14 )
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2J5_A_3(4NBK)
CASP6_HUMAN
[Raw transfer]



2J6_A_3(4NBL)
CASP6_HUMAN
[Raw transfer]



CHAIN_C_3(4HVA)
CASP6_HUMAN
[Raw transfer]
-
CHAIN_D_4(4HVA)
CASP6_HUMAN
[Raw transfer]
-
2GQ_A_3(4N7M)
CASP6_HUMAN
[Raw transfer]



2GQ_B_4(4N7J)
CASP6_HUMAN
[Raw transfer]



CHAIN_D_4(3S70)
CASP6_HUMAN
[Raw transfer]
-
CHAIN_C_2(3OD5)
CASP6_HUMAN
[Raw transfer]
-
CHAIN_B_2(3S70)
CASP6_HUMAN
[Raw transfer]
-
CHAIN_D_4(3OD5)
CASP6_HUMAN
[Raw transfer]
-
CHAIN_C_2(1CP3)
CASP3_HUMAN
[Raw transfer]
-
2FQ_A_3(4N5D)
CASP6_HUMAN
[Raw transfer]



2GQ_B_5(4N6G)
CASP6_HUMAN
[Raw transfer]



2J7_B_8(4NBN)
CASP6_HUMAN
[Raw transfer]



4HV_B_5(4HVA)
CASP6_HUMAN
[Raw transfer]



CHAIN_Z_11(3QNW)
?
[Raw transfer]
-
4HV_A_6(4HVA)
CASP6_HUMAN
[Raw transfer]



CHAIN_X_9(3QNW)
?
[Raw transfer]
-
CHAIN_Z_11(3QNW)
?
[Raw transfer]
-
CHAIN_Y_10(3QNW)
?
[Raw transfer]
-
CHAIN_E_3(1PYO)
CASP2_HUMAN
[Raw transfer]
-
CHAIN_B_5(2J32)
CASP3_HUMAN
[Raw transfer]
-
CHAIN_X_9(3QNW)
?
[Raw transfer]
-
CHAIN_Y_10(3QNW)
?
[Raw transfer]
-
CHAIN_I_3(2DKO)
CASP3_HUMAN
[Raw transfer]
-
CHAIN_C_3(1F1J)
CASP7_HUMAN
[Raw transfer]
-
CHAIN_B_2(4EHH)
?
[Raw transfer]
-
CHAIN_B_2(4EHD)
CASP3_HUMAN
[Raw transfer]
-
MPD_B_8(2XZD)
?
[Raw transfer]



CHAIN_C_3(4JR2)
?
[Raw transfer]
-
33 PsiBlast_CBE 95.1699%-125 - C4 -4N7M 3.2 CASP6_HUMAN
32 PsiBlast_CBE 94.7699%-121 - C4 -4NBK 4.6 CASP6_HUMAN
31 PsiBlast_CBE 94.5699%-121 - C4 -4NBL 6.0 CASP6_HUMAN
35 PsiBlast_CBE 94.5099%-123 - C4 -4N6G 3.2 CASP6_HUMAN
34 PsiBlast_CBE 94.2299%-125 - C4 -4N7J 2.7 CASP6_HUMAN
4 PsiBlast_PDB 94.03100%-123 - C4 -3OD5 6.9 CASP6_HUMAN
25 PsiBlast_CBE 93.84100%-123 - C4 -3S70 6.8 CASP6_HUMAN
30 PsiBlast_CBE 93.7199%-126 - C4 -4NBN 5.1 CASP6_HUMAN
5 PsiBlast_PDB 93.60100%-122 - C4 -3S70 6.9 CASP6_HUMAN
36 PsiBlast_CBE 93.5199%-123 - C4 -4N5D 3.0 CASP6_HUMAN
26 PsiBlast_CBE 92.53100%-122 - C4 -3OD5 7.2 CASP6_HUMAN
37 PsiBlast_CBE 91.2194%-122 - C4 -4HVA 8.5 CASP6_HUMAN
17 PsiBlast_PDB 91.1094%-123 - C4 -4HVA 8.2 CASP6_HUMAN
43 Fugue 78.2544%-114 - C4 -1CP3 4.7 CASP3_HUMAN
61 HHSearch 77.9339%-119 * C4 *4JR2 7.7 ?
20 PsiBlast_PDB 76.1141%-112 - C4 -4EHH 7.6 ?
57 HHSearch 73.8138%-113 - C4 -1F1J 5.5 CASP7_HUMAN
54 HHSearch 69.3043%-110 - C4 -2J32 6.8 CASP3_HUMAN
52 HHSearch 69.3042%-109 - C4 -4EHD 6.9 CASP3_HUMAN
39 PsiBlast_CBE 55.58100%-121 - C4 -3QNW 2.1 ?
19 PsiBlast_PDB 55.17100%-119 - C4 -3QNW 2.2 ?
38 PsiBlast_CBE 54.86100%-120 - C4 -3QNW 2.2 ?
66 HHSearch 53.3239%-124 - C4 -2DKO 1.5 CASP3_HUMAN
68 HHSearch 48.5134%-114 - C4 -1PYO 3.4 CASP2_HUMAN
41 PsiBlast_CBE 41.72100%-106 - C4 -3QNW 5.8 ?
42 PsiBlast_CBE 41.40100%-105 - C4 -3QNW 5.7 ?
40 PsiBlast_CBE 39.22100%-103 - C4 -3QNW 5.3 ?
70 HHSearch 31.7748% -71 - C4 -2XZD 3.6 ?