@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0332: (2016-03-14 )
MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISAKGKETPRNLMAFKDGTINPRKSNQLKDYVFIDDGWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEANTSILRRAFNYVDGTDDRTGNFETGLLFIAFQKATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PP9_A_3(2Y4E)
EFEB_ECOLI
[Raw transfer]



HEM_B_12(2Y4F)
EFEB_ECOLI
[Raw transfer]



PP9_B_7(2Y4E)
EFEB_ECOLI
[Raw transfer]



HEM_A_3(4GRC)
?
[Raw transfer]



HEM_B_6(4GS1)
?
[Raw transfer]



HEM_A_3(2Y4F)
EFEB_ECOLI
[Raw transfer]



HEM_A_3(4GS1)
?
[Raw transfer]



PG4_B_23(2Y4D)
EFEB_ECOLI
[Raw transfer]



PG4_A_10(2Y4D)
EFEB_ECOLI
[Raw transfer]
1 PsiBlast_PDB 93.7343% -77 - C6 -4GRC 11.2 ?
3 PsiBlast_PDB 91.3535% -69 - C6 -2Y4D 2.5 EFEB_ECOLI
24 PsiBlast_CBE 90.9734% -66 - C6 -4GT2 - ? -
6 PsiBlast_PDB 90.8736% -72 - C6 -3O72 - EFEB_ECO57 -
23 PsiBlast_CBE 90.5935% -69 - C6 -2Y4D 2.3 EFEB_ECOLI
26 PsiBlast_CBE 90.4934% -67 - C6 -4GT2 - ? -
2 PsiBlast_PDB 90.4435% -70 - C6 -2Y4F 8.5 EFEB_ECOLI
21 PsiBlast_CBE 90.1035% -68 - C6 -2Y4F 11.0 EFEB_ECOLI
22 PsiBlast_CBE 89.8435% -70 - C6 -2Y4E 10.6 EFEB_ECOLI
5 PsiBlast_PDB 89.8134% -65 - C6 -4GT2 - ? -
4 PsiBlast_PDB 88.9335% -66 - C6 -2Y4E 10.1 EFEB_ECOLI
25 PsiBlast_CBE 88.8734% -65 - C6 -4GT2 - ? -
28 HHSearch 88.1935% -65 - C6 -3O72 - EFEB_ECO57 -
27 PsiBlast_CBE 73.3837% -61 - C6 -4GS1 9.9 ?
7 PsiBlast_PDB 72.9537% -59 - C6 -4GS1 9.1 ?
30 HHSearch 64.4919% -63 * C6 *3QNS - ? -
29 HHSearch 63.6917% -65 - C6 -2IIZ - ? -
31 HHSearch 63.4517% -63 - C6 -2GVK - ? -
42 Fugue 62.7518% -60 - C6 -3QNS - ? -
32 HHSearch 57.5517% -47 - C6 -3VXJ - ? -