@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0045: (2016-03-11 )
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_4(3VDY)
SSBB_BACSU
[Raw transfer]

-

NACID_C_3(3VDY)
SSBB_BACSU
[Raw transfer]

-

NACID_F_6(3VDY)
SSBB_BACSU
[Raw transfer]

-

NACID_F_6(3VDY)
SSBB_BACSU
[Raw transfer]

-

1 PsiBlast_PDB 87.8361%-119 - C1 -3VDY 6.5 SSBB_BACSU
34 HHSearch 87.0559%-119 - C1 -3VDY 6.5 SSBB_BACSU
21 PsiBlast_CBE 82.4361%-122 - C1 -3VDY 4.6 SSBB_BACSU
28 PsiBlast_CBE 78.7833%-115 * C1 *3PGZ - ? -
3 PsiBlast_PDB 76.1245%-129 - C1 -1X3F - SSB_MYCS2 -
40 HHSearch 75.9029%-123 - C1 -3ULP - ? -
23 PsiBlast_CBE 75.5643%-126 - C1 -1UE1 - SSB_MYCTU -
37 HHSearch 75.1636%-106 - C1 -3TQY - SSB_COXBU -
29 HHSearch 74.9632%-115 - C1 -3PGZ - ? -
36 HHSearch 74.9235%-108 - C1 -3AFP - SSB_MYCLE -
4 PsiBlast_PDB 74.0145%-125 - C1 -1X3G - SSB_MYCS2 -
24 PsiBlast_CBE 72.8541%-120 - C1 -3AFP - SSB_MYCLE -
12 PsiBlast_PDB 72.8333%-108 - C1 -3TQY - SSB_COXBU -
31 HHSearch 72.6835%-110 - C1 -3EIV - SSB2_STRCO -
5 PsiBlast_PDB 71.1747%-119 - C1 -3A5U - SSB_MYCS2 -
8 PsiBlast_PDB 69.8544%-127 - C1 -3EIV - SSB2_STRCO -
6 PsiBlast_PDB 69.7243%-123 - C1 -1UE1 - SSB_MYCTU -
7 PsiBlast_PDB 69.1443%-122 - C1 -1UE5 - SSB_MYCTU -
9 PsiBlast_PDB 69.0841%-128 - C1 -3AFP - SSB_MYCLE -
48 HHSearch 68.6535%-120 - C1 -2FXQ - SSB_THEAQ -