@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4031: (2016-02-23 )
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

POP_A_13(2AU9)
IPYR_ECOLI
[Raw transfer]




POP_A_11(2AUU)
IPYR_ECOLI
[Raw transfer]




POP_A_14(2AU6)
IPYR_ECOLI
[Raw transfer]




POP_A_10(1I6T)
IPYR_ECOLI
[Raw transfer]




PPV_B_15(3Q9M)
?
[Raw transfer]




PPV_A_7(3Q9M)
?
[Raw transfer]




POP_A_5(3EIY)
?
[Raw transfer]




POP_A_4(3Q4W)
?
[Raw transfer]




POP_A_7(2BQY)
IPYR_HELPY
[Raw transfer]




1 PsiBlast_PDB 96.73100%-111 - C8 -4XEL - IPYR_PSEAE -
21 PsiBlast_CBE 93.96100%-112 - C8 -4XEL - IPYR_PSEAE -
13 PsiBlast_PDB 87.5870%-116 - C8 -1I40 - IPYR_ECOLI -
24 PsiBlast_CBE 87.4570%-114 - C8 -1JFD - IPYR_ECOLI -
115 HHSearch 87.1863%-109 - C8 -3GVF - ? -
30 PsiBlast_CBE 86.9662%-109 - C8 -3GVF - ? -
5 PsiBlast_PDB 86.6370%-113 - C8 -1JFD - IPYR_ECOLI -
29 PsiBlast_CBE 86.1370%-109 - C8 -1OBW - IPYR_ECOLI -
3 PsiBlast_PDB 86.0670%-118 - C8 -2EIP - IPYR_ECOLI -
20 PsiBlast_PDB 86.0269%-112 - C8 -2AU7 - IPYR_ECOLI -
33 PsiBlast_CBE 86.0062%-110 - C8 -3EIY 3.5 ?
27 PsiBlast_CBE 86.0070%-110 - C8 -1MJW - IPYR_ECOLI -
116 HHSearch 85.7868%-108 - C8 -2AU7 - IPYR_ECOLI -
25 PsiBlast_CBE 85.7170%-110 - C8 -1IPW - IPYR_ECOLI -
16 PsiBlast_PDB 85.6470%-106 - C8 -2AU9 2.9 IPYR_ECOLI
8 PsiBlast_PDB 85.5870%-108 - C8 -1MJW - IPYR_ECOLI -
7 PsiBlast_PDB 85.4670%-111 - C8 -1INO - IPYR_ECOLI -
32 PsiBlast_CBE 85.4362%-105 - C8 -3EJ0 - ? -
28 PsiBlast_CBE 85.3070%-112 - C8 -1OBW - IPYR_ECOLI -
15 PsiBlast_PDB 85.2470%-110 - C8 -2AU8 - IPYR_ECOLI -
12 PsiBlast_PDB 85.2370%-111 - C8 -1I6T 3.3 IPYR_ECOLI
14 PsiBlast_PDB 85.2170%-110 - C8 -2AU6 3.4 IPYR_ECOLI
17 PsiBlast_PDB 84.5570%-107 - C8 -2AUU 2.8 IPYR_ECOLI
69 PsiBlast_CBE 78.1748% -98 - C8 -2BQY 4.0 IPYR_HELPY
79 PsiBlast_CBE 76.5441%-102 - C8 -3Q9M 2.9 ?
82 PsiBlast_CBE 76.5041%-101 - C8 -3Q4W 3.3 ?
78 PsiBlast_CBE 76.1141%-104 - C8 -3Q9M 3.5 ?