@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4505: (2016-02-28 )
MSLLDIKNLSVRFGDTTAVPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGWVSADHLRFDGHDMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLHLGLRGKALRQRALELLERVEIPAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEPTTALDVTIQAQIMELLLNLQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIGGVPALFDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEHCRQERPALETHERGAVRCFYPLNLLNEVA

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_3(4FWI)
?
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




1 PsiBlast_PDB 84.9539%-119 - C1 -4FWI 4.2 ?
13 PsiBlast_PDB 81.8731%-139 - C1 -3TUZ - METN_ECOLI -
38 PsiBlast_CBE 81.6031%-131 - C1 -3TUI - METN_ECOLI -
3 PsiBlast_PDB 79.3936%-135 - C1 -4U02 - ? -
2 PsiBlast_PDB 79.1036%-135 - C1 -4U00 5.7 ?
12 PsiBlast_PDB 78.9831%-132 - C1 -3TUI - METN_ECOLI -
35 PsiBlast_CBE 78.9631%-134 - C1 -3TUZ - METN_ECOLI -
22 PsiBlast_CBE 78.8136%-137 - C1 -4U02 - ? -
24 PsiBlast_CBE 78.7333%-131 - C1 -3C41 5.8 ?
36 PsiBlast_CBE 78.3531%-136 - C1 -3TUZ - METN_ECOLI -
23 PsiBlast_CBE 78.3436%-137 - C1 -4U02 - ? -
39 PsiBlast_CBE 78.2131%-129 - C1 -3TUI - METN_ECOLI -
85 HHSearch 78.1430%-129 * C1 *3TUI - METN_ECOLI -
34 PsiBlast_CBE 77.4631%-134 - C1 -3TUZ - METN_ECOLI -
21 PsiBlast_CBE 76.8836%-132 - C1 -4U02 - ? -
25 PsiBlast_CBE 76.8533%-131 - C1 -3C4J - ? -
104 Fugue 76.7226%-120 - C1 -3TUZ - METN_ECOLI -
99 HHSearch 76.5930%-131 - C1 -1B0U - HISP_SALTY -
9 PsiBlast_PDB 76.3933%-127 - C1 -3C4J - ? -
8 PsiBlast_PDB 75.9433%-125 - C1 -2Q0H - ? -
32 PsiBlast_CBE 75.2733%-128 - C1 -2OLK 5.5 ?
30 PsiBlast_CBE 74.4933%-127 - C1 -2OLK 5.6 ?
15 PsiBlast_PDB 66.5831%-128 - C1 -1VCI 3.8 ?
17 PsiBlast_PDB 59.3834%-118 - C1 -1L2T 4.1 Y796_METJA
40 PsiBlast_CBE 56.4334%-118 - C1 -1L2T 4.5 Y796_METJA
41 PsiBlast_CBE 56.3534%-125 - C1 -3TIF 4.2 Y796_METJA
18 PsiBlast_PDB 55.9434%-120 - C1 -3TIF 4.1 Y796_METJA
68 PsiBlast_CBE 55.1731%-106 - C1 -2FGK 5.7
73 PsiBlast_CBE 54.0331%-108 - C1 -2FGJ 5.7
69 PsiBlast_CBE 53.9431%-107 - C1 -2FGK 6.1 HLYBP_ECOLX
79 PsiBlast_CBE 53.4231%-107 - C1 -1XEF 6.3 HLYBP_ECOLX
71 PsiBlast_CBE 53.2131%-106 - C1 -2FGK 6.4 HLYBP_ECOLX
76 PsiBlast_CBE 53.0831%-108 - C1 -2FGJ 6.1 HLYBP_ECOLX
70 PsiBlast_CBE 52.9631%-105 - C1 -2FGK 5.9 HLYBP_ECOLX
80 PsiBlast_CBE 51.8031%-104 - C1 -1XEF 6.0 HLYBP_ECOLX
74 PsiBlast_CBE 51.4831%-107 - C1 -2FGJ 5.8 HLYBP_ECOLX
77 PsiBlast_CBE 51.4531%-103 - C1 -2FFA 5.2
78 PsiBlast_CBE 51.1431%-108 - C1 -1XEF 6.0
81 PsiBlast_CBE 50.6631%-105 - C1 -1XEF 5.9 HLYBP_ECOLX
75 PsiBlast_CBE 50.2131%-106 - C1 -2FGJ 5.7 HLYBP_ECOLX
48 PsiBlast_CBE 48.9531%-105 - C1 -2PMK 5.4
72 PsiBlast_CBE 48.8431%-101 - C1 -2FFB 5.3
67 PsiBlast_CBE 48.2131%-103 - C1 -3B5J 5.6
49 PsiBlast_CBE 48.0331%-105 - C1 -2FF7 5.4