@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0079: (2016-03-11 )
MMCKLEWDDEINFGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRALANFDIN
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10.---.----......20..---......30......--..40.-.-......50.----...----..---..60--------..--------.---..------...70.......---.80.......------.90.-.......-100...-....110-----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
M
C
K
L
EW--DDEIN---F----
G
K
I
S
F
L
SHSH---IPD
R
K
T
G
L
E
L
A
E
K
Y--GI
D
G
V
-
M
-IGSGIFHNP----FAF----EK---E
P
R
E
--------
H
T
--------
S
---
K
E
------
L
L
D
L
L
R
L
H
L
S
L
F
---
N
KY
E
K
D
E
I
R
Q
------
F
K
S
L
-
R
R
F
F
K
I
Y
-
V
R
G
I
R
A
-
L
ANFDIN-----------------------------------------------------------------------------------------------------------------------------
38
HHSearch
89.66
21%
-73
* C2 *
1VHN
1
?
A:
[171-286]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
E
W
--
K
A
L
S
V
---
L
E---
K
R
I
P
T
F
V
S
G
D
---
I
F
T
P
E
D
A
K
R
A
L
E
E
S
--
G
C
D
G
L
-
L
-
V
A
R
G
A
I
G
R
P
----
W
I
F
----
K
Q
---
I
K
D
F
L
R
SG
K
Y
S
E
P
S
--------
R
---
E
E
------
I
L
R
T
F
E
R
H
L
E
L
L
---
I
K
T
K
G
-
E
R
K
A
------
V
V
E
M
-
R
K
F
L
A
G
Y
-
T
K
D
L
K
G
-
A
R
R
F
R
E
------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
86.88
20%
-86
- C2 -
3B0P
1
DUSAL_THET8
A:
[182-294]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
R
H
--
D
W
V
H
R
---
L
K
G
D
F
P
Q
L
T
F
V
T
N
G
G
---
I
R
S
L
E
E
A
L
F
H
L
K
----
R
V
D
G
V
-
M
-
L
G
R
A
V
Y
E
D
P
----
F
V
L
----
E
E
---
A
D
R
R
VFGLP
R
R
-
P
S
--------
R
---
L
E
------
V
A
R
R
M
R
A
Y
L
E
E
E
---
V
L
K
G
----
T
P
------
P
W
A
V
-
L
R
H
M
L
N
L
-
F
R
G
R
P
K
-
G
R
L
W
R
R
------------------------------------------------------------------------------------------------------------------------------
60
Fugue
85.71
20%
-82
- C2 -
1VHN
4
?
A:
[5-309]
-------------------V
K
V
G
L
A
PMAGYTD
S
A
F
R
T
L
A
F
E
W
GAD
F
A
F
S
EMVS
A
K
G
F
L
M
NS
Q
K
T
E
E
L
LPQPHERNVAV
Q
I
F
G
SE
P
N
E
L
S
E
A
A
R
I
L
S
E
K
YK
W
I
D
L
N
AGCPV
R
K
V
V
K
E
GAGGALLKD
L
R
H
F
R
Y
I
V
R
E
L
R
K
S
VS
G
K
F
S
V
K
T
R
LGWEKNE
V
E
E
I
Y
R
I
L
V
E
E
GVD
E
V
F
I
HTRTVVQSFTGRAEWK
A
L
S
V
L
E
----------------
K
R
I
P
T
F
V
S
G
D
---
I
F
T
P
E
D
A
K
R
A
L
E
E
S
--
G
C
D
G
L
-
L
-
V
A
R
G
A
I
G
R
P
----
W
I
F
----
K
Q
---
I
K
D
F
--------
L
R
SG
K
Y
S
E
P
S
R
---
E
E
------
I
L
R
T
F
E
R
H
L
E
L
L
---
I
K
T
K
G
E
R
K
A
V
------
V
E
--
M
R
K
F
L
A
G
Y
-
T
K
D
L
K
G
-
A
R
R
F
R
E
K
V
M
KIEE
V
Q
I
L
K
E
M
F
Y
N
F
I
K
E
V
E-------------------------------------------------------------------------------------------------------
61
Fugue
80.58
16%
-104
- C2 -
4BFA
6
DUSC_ECOLI
A:
[22-338]
A
S
M
R
V
L
L
A
PMEGVLD
S
L
V
R
E
L
L
T
E
V
N
DYD
L
C
I
T
EFVRVVDQLLP
V
K
V
F
H
R
I
C
PELQNASRTPS
G
T
L
V
R
V
Q
L
L
G
Q
F
P
Q
W
L
A
E
N
A
A
R
A
V
E
L
GSW
G
V
D
L
N
CGCP
S
K
T
V
NGSGGG
A
T
L
L
K
D
P
E
L
I
Y
Q
G
A
K
A
M
R
E
A
VPAH
L
P
V
S
V
K
V
R
LGWDSGEK
K
F
E
I
A
D
A
V
Q
Q
A
GAT
E
L
V
V
HGRTKEQGYRAEHID
W
Q
A
I
G
D
I
R
Q
R
L
------------------
N
I
P
V
I
A
N
G
E
---
I
W
D
W
Q
S
A
Q
Q
C
M
A
I
S
--
G
C
D
A
V
-
M
-
I
G
R
G
A
L
N
I
P
----
N
L
S
----
R
V
---
V
K
Y
N
--------
E
P
--------
R
MP
W
P
E
------
V
V
A
L
L
Q
K
Y
T
R
L
----
E
K
Q
G
D
T
G
L
Y
H
------
V
A
R
I
-
K
Q
W
L
S
Y
L
-
R
K
E
Y
D
E
-
A
T
E
L
F
Q
H
V
R
VLNN
S
P
D
I
A
R
A
I
Q
A
IDIEKL-------------------------------------------------------------------------------------------------------
63
Fugue
80.11
18%
-97
- C2 -
3B0P
1
DUSAL_THET8
A:
[2-318]
---------------LDPR
L
S
V
A
PMVDRTD
R
H
F
R
F
L
V
R
Q
V
SLG
V
R
L
Y
T
EMTV
D
Q
A
V
L
RGNRERLLAFRPEEHP
I
A
L
Q
L
A
G
S
D
P
K
S
L
A
E
A
A
R
I
G
E
A
F
GYD
E
I
N
L
N
LGCPS
E
K
A
Q
E
G
GYGACLLLD
L
A
R
V
R
E
I
L
K
A
M
G
E
A
V
R
V
P
V
T
V
K
M
R
LGLEGKET
Y
R
G
L
A
Q
S
V
E
A
M
A
E
A
GVK
V
F
V
V
HARSALIPPLR
H
D
W
V
H
R
L
K
G
--
D
-------
F
----
P
Q
L
T
F
V
T
N
G
G
---
I
R
S
L
E
E
A
L
F
H
L
K
R
----
V
D
G
V
-
M
-
L
G
R
A
V
Y
E
D
P
----
F
V
L
EEAD
R
R
---
V
F
G
L
--------
P
R
--------
R
---
P
S
------
R
L
E
V
A
R
R
M
R
A
Y
L
---
E
E
E
V
L
K
G
T
P
P
------
W
A
V
L
-
R
H
M
L
N
L
F
--
R
G
R
P
K
-
G
R
L
W
R
R
L
L
S
E
G
RS
L
Q
A
L
D
R
A
L
R
L
M
E
E
E
VGE------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.58
26%
-80
- C2 -
3B0U
1
DUSAL_THET8
X:
[194-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
F
----
P
Q
L
T
F
V
T
N
G
G
---
I
R
S
L
E
E
A
L
F
H
L
K
R
----
V
D
G
V
-
M
-
L
G
R
A
V
Y
E
D
P
----
F
V
L
----
E
E
---
A
D
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.07
26%
-75
- C2 -
3B0P
1
DUSAL_THET8
A:
[194-240]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
F
----
P
Q
L
T
F
V
T
N
G
G
---
I
R
S
L
E
E
A
L
F
H
L
K
R
----
V
D
G
V
-
M
-
L
G
R
A
V
Y
E
D
P
----
F
V
L
----
E
E
---
A
D
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
60.42
29%
-94
- C2 -
4FCX
2
RAD32_SCHPO
B:
[29-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
D
S
F
V
S
F
N
E
---
I
------
L
E
I
A
R
E
R
--
D
V
D
M
I
-
L
-
L
G
G
D
I
F
H
-------------
D
N
---
K
P
S
R
--------
K
A
--------
L
---
Y
Q
------
A
L
R
S
L
R
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
59.82
24%
-82
- C2 -
3B0V
1
DUSAL_THET8
C:
[215-261]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
F
----
P
Q
L
T
F
V
T
N
G
G
---
I
R
S
L
E
E
A
L
F
H
L
K
R
----
V
D
G
V
-
M
-
L
G
R
A
V
Y
E
D
P
----
F
V
L
----
E
E
---
A
D
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
58.92
29%
-106
- C2 -
4FBW
2
RAD32_SCHPO
A:
[34-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
D
S
F
V
S
F
N
E
---
I
------
L
E
I
A
R
E
R
--
D
V
D
M
I
-
L
-
L
G
G
D
I
F
H
-------------
D
N
---
K
P
S
R
--------
K
A
--------
L
---
Y
Q
------
A
L
R
S
L
R
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
69
Fugue
57.71
17%
-45
- C2 -
3RKL
1
?
A:
[2-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
K
I
T
I
N
I
K
--
D
N
T
I
E
---
Y
----
G
H
K
E
F
V
L
S
N
------------------------------------------------
L
Q
---
E
D
I
K
--------
N
L
--------
A
---
E
I
------
V
Y
Q
L
A
K
L
I
E
K
L
----
S
Q
Y
E
E
E
V
D
T
E
------
L
Y
N
L
-
L
H
E
Y
A
I
Y
-
L
A
G
A
T
S
M
F
I
D
S
E
N
K
-----------------------------------------------------------------------------------------------------------------------------
64
Fugue
56.17
23%
-27
- C2 -
3G8Q
2
CDAT8_METKA
A:
[1-278]
--------------------------------------------------------------------------------------------------------------------------------------------------M
K
V
S
L
AGQTVD
V
K
K
I
L
N
E
IPKR
T
V
T
A
A
L
L
E
GGEIV
A
V
E
E
A
D
DEH
A
E
R
K
L
V
R
--
R
H
D
V
E
--------
G
K
V
V
F
V
T
A
R
-----
P
C
L
Y
C
A
R
E
L
A
E
A
---
G
V
A
G
V
-
V
Y
L
G
R
G
R
G
L
G
P
----
Y
Y
L
----
A
R
S
G
V
E
V
V
E
V
-------
H
P
--------
D
---
E
P
------
L
G
Y
D
P
V
D
R
L
D
V
L
---
L
T
F
G
G
N
P
Y
L
T
------
E
E
D
V
-
A
A
R
V
Y
C
L
-
L
T
G
-----
R
G
F
D
A
D
I
A
P
APENLSG
R
V
E
I
M
V
TRGD
P
D
E
A
V
E
L
L
K
E
E
L
PV
F
R
I
R
R
F
LISGEFD
R
D
E
L
R
E
R
I
L
E
DIEPRILD
P
F
A
V
R
A
R
I
ARAGAFSS
S
R
E
A
E
V
F
I
G
D
V
L
T
S
V
G
R
E
V
N
LNDPR
T
V
V
T
V
D
V
L
GP
R
V
S
V
G
V
E
K
R
65
Fugue
54.98
16%
-48
- C2 -
2F6M
2
VPS28_YEAST
B:
[3-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
S
Q
L
F
--
H
D
E
V
P
--------------
L
F
D
N
---
S
I
T
S
K
D
K
E
V
I
E
T
L
S
--
E
I
Y
S
I
-
V
-
I
T
L
D
H
V
E
K
A
----
Y
L
K
----
D
S
---
I
D
D
T
--------
Q
Y
--------
T
---
N
T
------
V
D
K
L
L
K
Q
F
K
V
Y
L
---
N
S
Q
N
K
E
E
I
N
K
H
-----
F
Q
S
I
-
E
A
F
A
D
T
Y
N
I
T
A
S
N
A
-
I
T
R
L
E
R
G
-----------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.86
28%
-16
- C2 -
3ZQ5
1
PHY1_SYNY3
A:
[84-171]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
S
S
L
N
P
S
K
---
L
W
A
R
V
M
G
-----------
D
D
F
-
V
-
I
F
D
G
V
F
H
R
N
SDG
L
L
V
C
----
E
L
---
E
P
-
A
--------
Y
T
--------
S
---
D
N
------
L
P
F
L
G
F
Y
H
M
A
------
N
A
A
L
N
R
L
R
Q
------
Q
A
N
L
-
R
D
F
Y
D
V
I
-
V
E
E
V
R
R
-
M
T
G
F
D
-------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
54.17
17%
-68
- C2 -
3KRU
1
?
A:
[276-323]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
N
I
K
T
S
A
V
G
L
---
I
T
T
Q
E
L
A
E
E
I
L
S
N
E
--
R
A
D
L
V
-
A
-
L
G
R
E
L
L
R
N
P
----
Y
W
V
----
L
H
---
T
Y
T
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
53.80
18%
-72
- C2 -
3L5A
1
?
A:
[318-362]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
P
L
I
A
S
G
G
---
I
N
S
P
E
S
A
L
D
A
L
Q
----
H
A
D
M
V
-
G
-
M
S
S
P
F
V
T
E
P
----
D
F
V
----
H
K
---
L
A
E
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
67
Fugue
53.58
22%
-25
* C3 *
1AQZ
2
RNMG_ASPRE
A:
[1-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
T
W
T
C
I
N
Q
Q
LE
D
K
R
L
L
---
Y
----
S
Q
A
K
A
E
S
N
S
H
H
AP
L
S
D
G
K
T
G
S
S
Y
P
H
W
F
TN
G
Y
D
G
N
G
K
-
L
I
K
G
--
R
T
P
----
I
K
F
----
G
K
---
A
D
C
D
--------
R
P
--------
P
---
K
H
S
QNGMG
K
D
D
H
Y
L
L
E
F
P
T
F
PDG
H
D
Y
K
F
D
S
K
K
P
KENPGP
A
R
V
I
-
Y
T
Y
P
N
K
V
-
F
C
G
I
V
A
-
H
Q
R
G
N
Q
G
D
L
R
L
C
S
H----------------------------------------------------------------------------------------------------------------------
58
HHSearch
52.92
15%
-50
- C2 -
1P4C
1
A:
[265-356]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
M
--
E
V
L
A
Q
S
V
A
K
----
T
G
K
P
V
L
I
D
S
G
---
F
R
R
G
S
D
I
V
K
A
L
A
-
L
--
G
A
E
A
V
-
L
-
L
G
R
A
T
L
Y
G
L
----
A
A
R
----
G
-------
E
--------
T
G
--------
V
---
D
E
------
V
L
T
L
L
K
A
D
I
D
R
T
---
L
A
Q
I
G
--
C
P
D
------
I
T
S
L
-
S
P
D
Y
L
Q
N
-
E
------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
51.71
28%
-41
- C2 -
2VEA
-
PHY1_SYNY3
A:
[84-174]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
S
S
L
N
P
S
K
---
L
W
A
R
V
M
-------------
D
F
-
V
-
I
F
D
G
V
F
H
R
N
SD
G
L
L
V
C
----
E
L
---
E
P
-
A
--------
Y
T
--------
S
---
D
N
------
L
P
F
L
G
F
Y
H
M
A
------
N
A
A
L
N
R
L
----------
N
L
-
R
D
F
Y
D
V
I
-
V
E
E
V
R
R
-
M
T
G
F
D
-------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
51.66
16%
-47
- C2 -
1GOX
1
GOX_SPIOL
A:
[279-359]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
P
V
F
L
D
G
G
---
V
R
R
G
T
D
V
F
K
A
L
A
-
L
--
G
A
A
G
V
-
F
-
I
G
R
P
V
V
F
S
L
----
A
A
E
----
G
E
---------------
A
G
--------
V
---
K
K
------
V
L
Q
M
M
R
D
E
F
E
L
T
---
M
A
L
S
G
--
C
R
S
------
L
K
E
I
-
S
R
S
H
I
A
A
-
D
W
D
----------------------------------------------------------------------------------------------------------------------------------------