@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0161: (2016-03-12 )
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
Atome Classification :
(20 SA)
----------------------------------------------------------.-...----....---.10-----....---..---..-.--------20.--------....-----.--..30..----------......40-----........50...-.--....--.--60....----.....---70........80-----..---..-.....90---.---...--.-----...-----.100.....------..110....---------------------------.---...120.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------
M
-
R
L
I
----
L
I
V
I
---
G
L
------
I
F
T
A
---
L
G
---
I
A
-
G
--------
A
VL--------PLLP-----T--
T
P
F
L
L
V
----------
A
V
F
C
FARS-----SD
R
F
Y
N
W
L
I-N
Q
K
-
I
--
Y
K
E
Y
--
V
--
E
-
N
F
YL----HRG
Y
T
---
L
Q
Q
K
I
K
I
L
I
S
L
------
Y
I
---
V
I-G
F
S
I
Y
M
----
V
---
D
V
L
--
A
-----
V
R
V
-----
G
L
I
I
M
V
I
I
Q
------
T
A
V
L
-
F
T
F
V
---------------------------
K
---
T
LPKSNHKIEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
86.22
15%
-197
- C2 -
2KPO
-
?
A:
[1-110]
----------------------------------------------------------
M
-
L
L
Y
----
V
L
I
I
-------------------------------------------------
S
-----
N
--
D
K
K
L
I
E
----------
E
A
R
K
M
A
E
K
-----
A
N
L
E
L
R
T
V
K
-
T
E
D
-
E
--
L
K
K
Y
--
L
--
E
-
E
F
R
K
----
E
--------
S
Q
N
I
K
V
L
I
L
V
------
S
N
---
D
E
-
E
L
D
K
A
K
----
E
---
L
A
Q
--
K
-----
M
E
I
-----
D
V
R
T
R
K
V
T
S
------
P
D
E
A
-
K
R
W
I
---------------------------
K
---
E
F
S
E
E
G
G
S
L
E
H
HHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
82.94
18%
-212
- C2 -
1JB1
1
HPRK_LACCA
A:
[21-193]
------------------------------------------------------E
R
R
S
-
M
H
G
V
----
L
V
D
I
YG
L
G
V
------
L
I
T
G
DSG
V
G
---
K
S
-
E
--------
T
A
L
--------
E
L
V
Q
-----
R
--
G
H
R
L
I
A
DD
R
V
D
V
Y
Q
QD
E
Q
T
I
V
G
A
A
-----
P
P
I
L
S
H
L
L
E
-
I
R
G
-
L
--
G
I
I
D
--
V
---M
N
L
F
G
----
A
G
A
V
R
---
E
D
T
T
I
S
L
I
V
H
L
E
N
W
T
P
D
Q
L
---
I
F
-
D
V
-
P
V
P
----
K
---
I
T
V
--
P
-----
V
K
V
-----
G
R
N
L
A
I
I
I
E
------
V
A
A
-
M
N
F
R
A
---------------------------
K
---
S
M
G
Y
D
A
T
K
T
F
E
K
N
L
N
H
L
I
E
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
82.28
17%
-173
- C2 -
4D0Y
7
?
A:
[1-184]
----------------------------------------------------------
A
-
E
V
V
NKGD
Y
Y
S
I
---
Q
G
------
K
Y
D
E
---
I
I
---
V
A
-
N
--------
K
H
Y
--------
P
L
S
K
DYNPG
E
--
N
P
T
A
K
A
----------
E
L
V
K
L
I
K
A
-----
M
Q
E
-
A
G
F
P
I
-
S
D
H
-
Y
S
G
F
R
S
Y
--
E
--
T
-
Q
T
K
L
----
Y
Q
D
Y
V
---
N
Q
D
G
K
E
A
A
D
R
Y
------
S
A
---
R
P
-
G
Y
S
E
H
Q
TGL
A
F
---
D
V
I
--
G
TDGDL
V
T
E
-----
E
K
A
A
Q
W
L
L
D
------
H
A
A
D
-
Y
G
F
V
VRYLKGKEKETGYMAEEW
H
L
R
Y
VGKE
A
K
---
E
I
A
E
S
G
L
S
L
E
E
Y
Y
G
F
E
G
G
D
YVD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
76.93
35%
-158
- C3 -
4U66
1
?
A:
[118-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
-
I
--
Y
T
E
I
--
V
P
L
E
-
N
F
Y
L
A
E
GY
H
Q
K
Y
Y
---
L
Q
N
T
T
K
L
Y
Q
T
L
------
K
A
---
I
Y
G
G
F
G
N
L
V
----
R
---
S
T
L
--
A
-----
A
R
M
-----
N
G
Y
I
A
G
N
L
S
------
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
76.76
35%
-156
- C3 -
4LWK
2
?
A:
[118-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
-
I
--
Y
T
E
I
--
V
P
L
E
-
N
F
Y
L
A
E
GY
H
Q
K
Y
Y
---
L
Q
N
T
T
K
L
Y
Q
T
L
------
K
A
---
I
Y
G
G
F
G
N
L
V
----
R
---
S
T
L
--
A
-----
A
R
M
-----
N
G
Y
I
A
G
N
L
S
------
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
76.05
35%
-155
- C3 -
4LWL
1
?
A:
[118-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
-
I
--
Y
T
E
I
--
V
P
L
E
-
N
F
Y
L
A
E
GY
H
Q
K
Y
Y
---
L
Q
N
T
T
K
L
Y
Q
T
L
------
K
A
---
I
Y
G
G
F
G
N
L
V
----
R
---
S
T
L
--
A
-----
A
R
M
-----
N
G
Y
I
A
G
N
L
S
------
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
75.05
35%
-156
- C3 -
4LWM
1
?
A:
[118-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
-
I
--
Y
T
E
I
--
V
P
L
E
-
N
F
Y
L
A
E
GY
H
Q
K
Y
Y
---
L
Q
N
T
T
K
L
Y
Q
T
L
------
K
A
---
I
Y
G
G
F
G
N
L
V
----
R
---
S
T
L
--
A
-----
A
R
M
-----
N
G
Y
I
A
G
N
L
S
------
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
74.88
35%
-151
- C3 -
4LWJ
2
?
A:
[118-184]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
-
I
--
Y
T
E
I
--
V
PL
E
-
N
F
Y
L
A
E
GY
H
Q
K
Y
Y
---
L
Q
N
T
T
K
L
Y
Q
T
L
------
K
A
---
I
Y
G
G
F
G
N
L
V
----
R
---
S
T
L
--
A
-----
A
R
M
-----
N
G
Y
I
A
G
N
L
S
------
I
A
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
74.80
21%
-152
- C1 -
2Y9W
1
?
C:
[9-150]
----------------------------------------------------------
L
-
D
L
P
GT--
R
I
L
N
---
G
A
------
N
W
A
N
---
N
S
---
A
T
S
G
--------
T
L
I
--------
I
F
D
Q
-----
S
--
T
P
-------------------
G
Q
D
-----
A
D
R
---
W
L
I
-
H
N
Y
-
L
--
D
G
Y
K
--
I
--
F
-
N
M
G
S
----
N
N
W
A
S
---
V
S
R
G
N
T
V
L
G
V
S
------
E
F
DGQ
T
C
-
K
W
S
I
E
Y
----
S
GNG
E
E
F
--
W
-----
I
R
V
PREGG
G
G
A
V
W
T
I
K
P
ASSQGP
T
T
V
F
-
L
D
L
L
---------------------------
K
E--
T
D
P
N
Q
R
I
K
F
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
73.42
19%
-199
- C2 -
4MND
4
DIPPS_ARCFU
A:
[40-457]
---------------------------------------------------------L
M
-
K
A
V
----
I
L
A
A
---
G
L
GGGVPK
P
L
V
R
---
V
G
GCE
I
I
-
L
--------
R
T
M
--------
K
L
L
S
-----
P
HV
S
E
F
I
I
V
----------
A
----
S
R
Y
-----
A
D
D
I
D
A
F
L
K
-
D
K
G
-
F
--
N
Y
K
I
--
V
--
R
-
H
D
R
P
----
E
K
G
N
G
Y
S
L
L
V
A
K
N
H
V
E
D
R
F
------
I
L
---
T
M
-
G
D
H
V
Y
S
----
Q
---
Q
F
I
E
K
A
-----
V
R
G
-----
E
G
V
I
A
D
R
E
P
------
R
F
V
D
-
I
G
E
A
---------------------------
T
---
K
I
R
V
E
D
G
R
V
A
K
IGKDLREFDCVDTG
F
F
V
L
D
D
S
I
F
E
H
A
E
K
L
R
DRE
E
I
P
L
S
E
I
V
K
L
A
R
L
P
V
T
Y
V
D
G
E
L
W
M
D
V
D
T
K
E
D
V
R
R
A
N
R
A
L
V
S
A
A
VGDGFISRKI
N
R
K
I
S
T
R
I
S
A
A
I
V
NKVN
P
N
Q
M
T
L
I
S
F
L
V
G
A
F
S
A
L
ASFFS
I
P
L
A
G
L
L
Y
Q
F
S
S
I
L
D
G
C
D
G
E
I
A
R
A
S
LKMS
K
K
G
G
Y
V
D
S
I
L
D
R
F
V
D
F
L
F
L
A
I
I
A
L
L
Y
PKT
A
T
V
A
M
F
A
I
F
G
S
V
M
V
S
Y
T
S
E
K
Y
K
A
E
FGESIRVLNYIPGK
R
D
E
R
I
F
L
I
M
I
F
C
L
L
S
A
I
SL
Q
W
I
F
W
M
F
L
F
V
A
A
I
S
L
T
R
V
V
V
T
L
L
A
V
L
V
S
1
PsiBlast_PDB
72.27
37%
-138
- C3 -
2WZF
2
?
A:
[451-506]
--------------------------------------------------------------------------
G
A
------
I
Y
N
A
---
L
G
---
G
A
-
G
--------
S
F
T
T
T
H
R
R
L
T
G
P
M
L
P
-----
T
--
T
P
P
R
V
L
----------
Q
V
F
C
D
A
H
D
KGPFV
S
D
N
I
A
R
W
Q
T
-
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
70.43
17%
-120
- C2 -
4OMV
-
?
A:
[3-205]
A
M
L
L
Y
T
K
K
DD
I
Y
S
D
I
V
R
M
I
L
L
I
K
GAN
A
K
I
V
DVSKEEN
S
K
H
L
E
E
L
N
I
I
T
P
NGNI
P
T
L
S
T
D
-
D
F
A
----
V
Y
R
L
---
S
V
------
I
I
E
A
---
I
E
---
D
L
-
Y
--------
P
F
P
--------
P
M
F
P
-------------------------
V
F
P
K
Q
R
A
-----
N
A
R
I
L
L
E
Y
V
-
N
K
T
-
F
--
L
Q
N
I
--
I
--
K
-
L
Q
S
P
----
D
L
D
E
K
---
Q
A
N
E
I
K
M
L
M
Q
R
------
D
I
---
I
S
-
T
Y
K
K
I
V
----
S
---
E
R
----------
A
Q
-----
N
I
N
V
L
T
L
I
I
------
T
F
V
F
-
Y
Y
F
I
---------------------------
K
L
KI
S
I
P
T
K
D
K
N
I
I
K
E
I
K
E
L
L
S
E
P
N
F
I
K
T
I
K
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
68.12
35%
-100
- C3 -
3JT1
1
?
A:
[451-506]
--------------------------------------------------------------------------
G
A
------
I
Y
N
A
---
L
G
---
G
A
-
S
NFTTT
H
R
R
S
T
G
--------
P
M
L
P
-----
T
--
T
P
P
R
V
L
----------
Q
V
F
C
D
A
H
D
K
G
PFV
S
D
N
I
A
R
W
Q
T
-
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
67.54
35%
-103
- C3 -
2WZG
1
?
A:
[451-514]
--------------------------------------------------------------------------
G
A
------
I
Y
N
A
---
L
G
---
G
A
-
S
NFTTT
H
R
R
S
T
G
--------
P
M
L
P
-----
T
--
T
P
P
R
V
L
----------
Q
V
F
C
D
A
H
D
K
G
PFV
S
D
N
I
A
R
W
Q
T
-
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
47.77
14%
-134
- C2 -
1X4R
-
A:
[1-99]
------------------------------------------------------------------------------------------
G
---
S
S
-
G
--------
S
S
G
--------
K
S
I
R
-----
L
--
A
K
E
K
E
--------------
S
Q
A
D
Y
-----
I
S
T
Y
V
E
W
Q
Y
I
D
K
N
-
I
--
T
Q
C
F
D
K
M
--
T
-
N
M
K
L
----
E
V
A
W
K
---
A
K
K
K
-----
D
T
------
V
V
---
Q
I
-
H
N
Q
D
F
T
----
V
---
D
L
S
--
T
-----------------
N
T
A
T
A
------
P
Q
G
Q
-
T
F
T
V
---------------------------
Q
---
R
L
V
K
A
S
G
P
S
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
43.21
25%
26
- C3 -
3N7N
-
LRS4_YEAST
E:
[3-33]
---------------------------------------------------------------------------------------------------------------------------------------------------
T
L
L
Q
L
L
-----
S
N
Y
Y
K
A
K
L
D
-
S
E
R
-
I
--
Y
N
E
Y
--
V
--
Q
-
S
Q
Y
E
----
F
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
37.90
24%
-49
- C3 -
1Q90
2
?
R:
[11-35]
----------------------------------------------------------
K
-
R
N
I
----
M
N
L
I
---
L
A
------
G
G
A
G
---
L
P
---
I
T
-
T
--------
L
A
L
--------
G
Y
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
31.57
21%
-15
* C3 *
2KIX
-
?
A:
[1-33]
------------------------------------------------------------------------------------------------------------------------
M
-----
L
--
E
P
F
Q
I
L
----------
S
I
S
S
F
I
L
S
-----
A
L
H
F
I
A
W
T
I
-
G
H
L
-
N
--
Q
I
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
26.72
16%
8
* C2 *
2KDT
-
NEC1_MOUSE
A:
[711-753]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
L
E
G
-
S
E
D
S
L
--
Y
S
D
Y
--
V
--
D
-
V
F
Y
N
----
T
K
P
Y
K
---
H
R
D
D
R
L
L
Q
A
L
M
------
D
I
---
L
N
-
E
E
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
25.48
36%
26
- C3 -
3WU2
-
PSBH_THEVL
H:
[17-38]
-----------------------------------------------------------------------------------------------
Y
-
G
--------
K
V
A
--------
P
G
W
G
-----
T
--
T
P
L
M
A
V
----------
F
M
G
L
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------