@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0094: (2016-03-12 )
MTSEFFSTLLLIIGLLIGFFLAILLILAGIRRFFCSAEEPLKRIRRYQVWHNRYQFNEEVTSFFTVIGATLLVSLITVQITAIPFQYTVLIFWSSWLFHLLSFWKKIRVPKKMKNEMIQLAGFLLITALYFVGYFAMKSLHFSIIHVADFPGVIQFGIRTYLTICSLFVASGALIVWQRIYVKLLK
Atome Classification :
(20 SA)
-----.........10.....-------...20----...---..-----....30........40...-.....50---------........60..---.....-.70..------------......80........90....-...----------.100.....---------..110----------------........120-.......130......-----.140......-.150--.......160.....--.--.170.......180....----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----M
T
S
E
F
F
S
T
L
L
L
I
I
G
L
L
-------
I
G
F
F
-----
L
A
I
---
L
L
-----
I
L
A
G
I
R
R
F
FC
S
A
E
E
P
L
K
R
I
-
R
R
Y
Q
V
W
H
---------
N
R
Y
Q
F
N
E
E
V
T
S
F
---
F
T
V
I
G
-
A
T
L
L
V
------------
S
L
I
T
V
Q
I
T
A
I
P
F
Q
Y
T
V
L
I
F
W
S
S
-
W
L
F
----------
H
L
L
S
F
W
K
KI---------RV
P
K
-----------------
K
M
K
N
E
M
I
Q
L
A
G
-
F
L
L
I
T
A
L
Y
F
V
G
Y
F
A
M
K
-----
S
L
H
F
S
I
I
H
VA-DF
P
G
--
V
I
Q
F
G
I
R
T
Y
L
T
I
C
S
L
--
F
--
V
AS
G
A
L
I
V
W
Q
R
I
Y
V
K
LLK----------------------------------------------------------------------------------------------------------------
21
Fugue
91.94
18%
-210
- C2 -
4J1V
3
MOB1A_HUMAN
A:
[9-180]
LRQAV
M
L
P
E
G
E
D
L
N
E
W
I
A
V
N
T
-------
V
D
F
F
-----
N
Q
I
---
N
M
-----
L
Y
G
T
I
T
E
F
C
T
E
A
S
C
P
V
M
S
A
G
P
R
Y
E
--------------
Y
H
W
A
D
P
I
K
--------
C
S
-
A
P
K
Y
I
------------
D
Y
L
M
T
W
V
Q
D
Q
L
D
D
E
T
L
------------------------
F
P
S
K
I
---------
G
V
P
-------------------
F
P
K
N
F
M
S
V
A
K
-
T
I
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K
R
L
F
R
V
Y
A
H
I
Y
H
Q
-------
H
F
D
S
V
M
Q
L
-
Q
E
E
A
--
H
L
N
T
S
F
K
H
F
I
F
F
V
Q
E
--
F
NL
I
D
R
R
E
L
A
P
L
Q
E
L
I
E
K
L
G
-----------------------------------------------------------------------------------------------------------------
17
Fugue
85.37
14%
-162
- C2 -
4R1D
-
?
B:
[1-301]
MDKTG
W
I
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H
C
F
G
R
F
L
I
D
L
P
P
D
-------
A
V
I
N
-----
A
G
Y
---
Y
L
-----
W
G
D
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I
E
Y
L
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P
T
E
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A
A
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-
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E
W
---------
R
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N
M
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---
L
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------------
G
L
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A
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----------
H
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R
W
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K
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---------
S
V
D
R
-----------------
E
Q
H
A
V
E
I
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A
L
-
A
R
N
L
R
S
R
A
P
K
E
I
P
S
E
P
-----
G
F
C
I
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H
A
Y
I
A
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D
S
F
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--
V
E
R
F
G
V
G
V
T
F
P
---------
E
H
P
G
A
R
F
E
F
R
S
S
T
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A
E
L
N
SLLERV
D
G
F
V
Q
N
M
L
S
T
F
AGMETL
R
K
G
K
H
P
V
GSLP
G
E
E
Y
L
V
A
G
S
D
KG
Q
R
G
Y
T
F
M
W
E
V
QGKEESLTE
P
N
L
T
A
G
L
A
V
L
E
RSNENGKPPPPAFKS
D
K
E
A
L
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L
W
D
T
I
V
D
S
IRVRPTS
18
Fugue
80.72
18%
-154
- C2 -
4F3V
6
ECCA1_MYCTU
A:
[1-275]
---G
H
M
T
D
R
L
A
S
L
F
E
S
A
V
S
M
L
PMS
E
A
R
S
L
D
L
F
-----
T
E
I
---
T
N
Y
D
ESA
C
D
A
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I
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C
G
D
T
D
---
R
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-
T
L
F
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A
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Y
---------
S
R
R
N
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Q
L
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S
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QIS
M
S
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-
A
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A
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GGLYGD
I
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P
VT
S
P
L
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F
A
A
C
E
A
A
Q
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N
Y
A
D
A
-
M
E
A
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E
AAPVAGS
E
H
L
V
A
W
M
K
A
V
V
Y
G
A
A
ER
W
T
D
V
I
D
-----------------
Q
V
K
S
A
G
K
W
P
D
K
-
F
L
A
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A
A
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V
A
H
G
V
A
A
A
N
L
AL
F
T
E
A
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R
R
L
T
E
A
N
-
D
S
P
A
GE
A
C
A
R
A
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A
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Y
L
A
M
A
R
R
--
S
--
Q
G
N
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S
A
A
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A
L
L
E
W
L
Q
T
T
H
PE
P
K
V
A
A
A
L
K
D
PSYRLKTTT
A
E
Q
I
A
S
RADPWDPGSVV---------------------------------------------------------------------------
16
Fugue
72.24
13%
-163
- C2 -
2H0R
1
PNC1_YEAST
A:
[1-216]
-----------
M
K
T
L
I
V
V
D
M
Q
-------
N
D
F
I
SPLGS
L
T
V
PKG
E
E
-----
L
I
N
P
I
S
D
L
M
Q
D
A
D
R
D
W
H
R
I
-
V
V
T
R
D
W
H
PSRHISFAK
N
H
K
D
K
E
P
Y
S
T
Y
T
---
Y
H
S
P
R
-
P
G
D
D
S
------------
T
Q
E
G
I
L
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P
V
H
C
V
K
N
T
W
G
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L
V
D
-
Q
I
M
----------
D
Q
V
V
T
K
H
I
K
---------
I
V
D
K
GFLTDREYYSAFHDIWN
F
H
K
T
D
M
N
K
Y
L
E
-
K
H
H
T
D
E
V
Y
I
V
G
V
A
L
E
Y
-----
C
V
K
A
T
A
I
S
A
A
-
E
-
L
G
--
Y
K
T
T
V
L
L
D
Y
T
R
P
I
S
D
D
P
E
--
V
I
N
K
V
K
E
E
L
K
A
H
N
I
N
V
V
D
K---------------------------------------------------------------------------------------------------------------
15
Fugue
61.45
16%
-107
- C2 -
2X5H
1
Y131_SIRV1
A:
[1-92]
-------------------------------------------------------------
G
M
A
S
L
K
E
I
-
I
D
-
E
L
G
K
---------
Q
A
K
E
Q
N
K
I
A
S
R
I
---
M
K
I
K
G
-
I
K
R
I
V
------------
V
Q
L
N
A
V
P
Q
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G
K
I
R
Y
S
M
T
I
H
S
Q
N
-----------------
N
F
R
K
Q
I
---------
G
I
T
P
-----------------
Q
D
A
E
D
L
K
L
I
A
E
-
F
L
E
K
Y
S
D
F
L
N
E
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
59.46
43%
-101
- C4 -
3I3N
-
KLH11_HUMAN
A:
[104-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
---------
R
V
S
T
-----------------
G
S
V
H
E
V
L
E
L
A
D
R
F
L
L
I
R
L
K
E
F
C
G
E
F
L
K
K
-----
K
L
H
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.44
43%
-105
- C4 -
4APF
-
KLH11_HUMAN
A:
[165-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
---------
R
V
S
T
-----------------
G
S
V
H
E
V
L
E
L
A
D
R
F
L
L
I
R
L
K
E
F
C
G
E
F
L
K
K
-----
K
L
H
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.84
43%
-109
- C4 -
4AP2
1
KLH11_HUMAN
A:
[122-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
---------
R
V
S
T
-----------------
G
S
V
H
E
V
L
E
L
A
D
R
F
L
L
I
R
L
K
E
F
C
G
E
F
L
K
K
-----
K
L
H
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
37.09
23%
157
* C4 *
1YYB
-
PDCD5_HUMAN
A:
[1-26]
------------------------------------------------------------
S
A
D
E
E
L
E
A
L
-
R
R
Q
R
L
A
E
---------
L
Q
A
K
H
G
D
P
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
35.06
23%
111
* C2 *
3DBO
-
VAPB5_MYCTU
A:
[53-86]
--------------------------------------------------------
R
R
W
L
S
K
T
E
F
L
S
R
L
-
R
G
A
Q
A
D
P
---------
G
L
R
N
D
L
A
V
L
A
G
D
---
T
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
33.03
15%
72
- C3 -
2LRN
-
?
A:
[30-49]
----------------------------------------------------------------------------------------------------------------------------------------
K
Y
V
L
V
D
F
W
F
A
-
G
C
S
----------
W
C
R
K
E
T
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
30.99
20%
182
- C2 -
3OTO
-
RSHX_THET8
U:
[2-25]
--------------------------------------------------------------
G
K
G
D
R
R
T
-
R
R
G
K
I
W
R
---------
G
T
Y
G
K
Y
R
P
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
29.95
18%
198
- C4 -
1V54
-
COX6C_BOVIN
I:
[34-59]
--------------------------------------------------------
A
T
F
Y
K
F
A
V
A
E
K
R
K
-
K
A
Y
A
D
F
Y
---------
R
N
Y
D
S
M
K
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.97
11%
124
* C3 *
3F9U
-
?
A:
[48-66]
----------------------------------------------------------------------------------------------------------------------------------------
K
P
V
M
L
D
F
T
G
Y
-
G
C
V
----------
N
C
R
K
M
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.03
44%
326
- C3 -
3HCZ
1
?
A:
[30-45]
--------------------------------------------------------------------------------------------------------------------------------------
Q
A
K
Y
T
I
L
F
F
W
D
S
-
Q
C
G
----------
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
19.36
29%
217
- C3 -
3EWL
-
?
A:
[25-41]
----------------------------------------------------------------------------------------------------------------------------------------
Q
Y
T
M
L
F
F
Y
D
P
-
D
C
S
----------
N
C
R
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
19.06
16%
95
- C4 -
3DL8
-
SECE_AQUAE
C:
[28-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
T
I
-
S
V
I
I
F
S
L
A
I
G
V
Y
L
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
16.97
8%
577
- C1 -
2I2X
-
MTAC_METBF
B:
[7-18]
------------------------------------------------------------------
A
S
L
-
K
K
V
L
T
R
Y
---------
N
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
14.00
0%
337
- C3 -
1ILO
-
THIRX_METTH
A:
[2-15]
------------------------------------------------------------------------------------------------------------------------------------------
M
K
I
Q
I
Y
G
T
-
G
C
A
----------
N
C
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
3.44
8%
482
- C3 -
3EYT
-
?
A:
[29-41]
----------------------------------------------------------------------------------------------------------------------------------------
K
V
I
V
I
E
A
F
Q
M
-
L
C
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------