@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01550: (2016-06-03 )
MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE
Atome Classification :
(20 SA)
--------------------------.........10........20........30..------......40-----..------......50.....--.-..60-----....--.....70..---......80........90.-.------......100......------.110......---.-120------........130-----.---.----......-------140----.--....------..150.......160-....------....170.-------......180...-----------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------MS
K
A
K
T
L
L
M
S
C
F
L
L
L
S
V
TACAPKDQAADM
D
Y
D
Q
------
T
K
K
M
V
V
D
I
-----LK------TD
D
G
K
K
A
I
K
E
L
LN--
D
-
D
AM------N
E
A
L
--
V
I
D
Q
D
A
I
K
G
---
T
I
E
K
T
L
T
S
K
K
G
E
E
F
W
K
N
I
F-E------DT
D
F
A
E
G
F
A
K
T
L
Q
T
E
------
H
E
K
V
I
K
K
L
MK---D-P
D
-------
Y
Q
K
M
L
M
S
V
M
Q------D---P----GM
D
K
K
Y
-------
S
Q
L
----
A
--
K
S
Q
E
------
F
R
S
Y
L
E
E
V
I
N
E
T
L
S--S
P
L
Y
------
K
K
Q
F
E
D
E
L
-------
K
K
A
A
K
DTAKESE-----------------------------------------------------------------------------------------------------------------------------------
79
Fugue
87.62
49%
-59
- C5 -
4O8W
-
?
A:
[69-178]
---------------------------------------------------------------------------------------------------------------------------
A
V
K
E
---
T
L
Q
Q
M
L
T
S
D
Q
G
K
K
F
W
E
S
A
L
-
K
------
D
P
K
F
A
E
S
F
A
K
G
L
Q
A
E
------
H
E
K
M
M
R
A
L
M
K
---
D
-
P
D
-------
Y
Q
A
L
M
I
D
I
L
K
------
D
---
P
----
E
M
E
K
A
M
-------
V
D
V
----
L
--
K
S
K
E
------
F
R
Q
H
L
Q
K
V
I
T
E
T
L
N
--
S
P
L
Y
------
Q
A
K
I
Q
D
M
L
-------
M
K
A
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.30
50%
-60
- C5 -
4O8W
-
?
A:
[69-176]
---------------------------------------------------------------------------------------------------------------------------
A
V
K
E
---
T
L
Q
Q
M
L
T
S
D
Q
G
K
K
F
W
E
S
A
L
-
K
------
D
P
K
F
A
E
S
F
A
K
G
L
Q
A
E
------
H
E
K
M
M
R
A
L
M
K
---
D
-
P
D
-------
Y
Q
A
L
M
I
D
I
L
K
------
D
---
P
----
E
M
E
K
A
M
-------
V
D
V
----
L
--
K
S
K
E
------
F
R
Q
H
L
Q
K
V
I
T
E
T
L
N
--
S
P
L
Y
------
Q
A
K
I
Q
D
M
L
-------
M
K
A
A
-------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
86.82
48%
-59
- C5 -
4O8W
-
?
A:
[69-178]
---------------------------------------------------------------------------------------------------------------------------
A
V
K
E
---
T
L
Q
Q
M
L
T
S
D
Q
G
K
K
F
W
E
S
A
L
-
K
------
D
P
K
F
A
E
S
F
A
K
G
L
Q
A
E
------
H
E
K
M
M
R
A
L
M
K
---
D
-
P
D
-------
Y
Q
A
L
M
I
D
I
L
K
------
D
---
P
----
E
M
E
K
A
M
-------
V
D
V
----
L
--
K
S
K
E
------
F
R
Q
H
L
Q
K
V
I
T
E
T
L
N
--
S
P
L
Y
------
Q
A
K
I
Q
D
M
L
-------
M
K
A
A
E
K
-----------------------------------------------------------------------------------------------------------------------------------------
82
Fugue
70.47
21%
-8
* C6 *
4LEU
-
PP266_ARATH
A:
[71-252]
--------------------------
K
L
I
G
K
E
A
L
F
V
I
L
G
L
K
R
L
-------
K
E
D
D
E
K
L
D
K
------
F
I
K
T
H
V
F
R
-----
L
L
------
K
L
D
M
L
A
V
I
G
E
L
E
R
--
Q
-
E
E
T
------
A
L
A
I
--
K
M
F
E
V
I
Q
K
Q
--------------
E
W
Y
Q
P
D
V
F
-
M
------
Y
K
D
L
I
V
S
L
A
K
S
K
R
M
D
------
E
A
M
A
L
W
E
K
M
K
---
K
-
E
N
L
F
P
D
S
Q
T
Y
T
E
V
I
R
G
F
L
R
------
D
GC
P
A
----
D
A
M
N
V
Y
-------
E
D
M
----
L
--
K
S
P
D
PPEE
L
P
F
R
V
L
L
K
G
L
L
P
H
P
L
L
--
R
N
K
V
------
K
K
D
F
E
E
L
F
-------
P
E
K
H
A
Y
D
P
P
E
E
------------------------------------------------------------------------------------------------------------------------------------
81
Fugue
64.97
13%
-14
- C5 -
1GZS
-
SOPE_SALTM
B:
[1-165]
----------------------GSLT
N
K
V
V
K
D
F
M
L
Q
T
L
N
D
I
D
I
R
G
S
A
S
K
D
---
P
A
Y
A
S
Q
------
T
R
E
A
I
L
S
A
-----
V
Y
------
S
K
N
K
D
Q
C
C
N
L
L
I
S
--
K
-
G
I
N
------
I
----------------------------
A
P
F
L
Q
E
I
G
-
E
------
A
A
K
N
A
G
--
L
P
G
T
T
K
N
------
D
V
F
T
P
S
G
A
G
A
---
N
-
P
F
-------
I
T
P
L
I
S
S
A
N
S
------
K
---------
Y
P
R
M
F
-------
I
N
Q
----
H
--
Q
Q
A
S
------
F
K
I
Y
A
E
K
I
I
M
T
E
V
A
--
P
L
F
N
ECAMPT
P
Q
Q
F
Q
L
I
L
-------
E
N
I
A
N
K
Y
I
Q
N
T
P
-----------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
63.67
17%
-70
- C5 -
4O8W
-
?
A:
[69-178]
----------------------------------------------------------
A
------
V
K
E
T
L
Q
Q
M
-----
L
T
------
S
D
Q
G
K
K
F
W
E
S
A
L
K
--
D
-
P
K
F
------
A
E
S
F
A
K
G
L
-----------------
Q
A
E
H
E
K
M
M
R
A
L
M
-
K
------
D
P
D
Y
Q
A
------------------
L
M
I
D
I
L
K
---
D
-
P
E
-------
M
E
K
A
M
V
D
V
L
K
------
S
---
K
----
E
F
R
Q
H
L
-------
Q
K
V
I
T
E
T
L
--
N
S
P
L
------
Y
Q
A
K
I
Q
D
M
L
M
K
A
A
E
--
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.83
27%
8
- C5 -
1P32
-
C1QBP_HUMAN
A:
[165-275]
-----------------------------------------------------------------
T
P
N
F
V
V
E
V
-----
I
K
------
N
D
D
G
K
K
A
---
L
V
L
--
D
-
C
H
Y
------
P
E
D
--------
E
A
E
S
DIF
S
I
R
E
V
S
F
Q
S
T
G
E
S
E
W
K
-----------
D
T
N
Y
------
T
L
N
T
D
------
S
--------
L
---
D
-
W
A
-------
L
Y
D
H
L
M
D
F
L
A
------
D
---
R
----
G
V
D
N
T
F
A
D
E
L
V
E
L
S
T
A
----
L
--
E
H
Q
E
------
Y
I
T
F
L
E
D
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
Fugue
57.22
19%
-43
- C5 -
2LLV
-
STI1_YEAST
A:
[127-197]
-------------------------------------------------------------------------------------------------------------------------------------------
Q
P
D
L
G
L
T
Q
L
F
-
A
------
D
P
N
L
I
E
N
L
K
K
N
P
K
T
------------
S
E
M
M
K
---
D
-
P
Q
-------
L
V
A
K
L
I
G
Y
K
Q
------
N
---
P
----
Q
A
I
G
Q
D
---------
L
----
F
--
T
D
P
R
------
L
M
T
I
M
A
T
L
M
G
V
D
L
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.05
27%
-7
* C7 *
3PGX
1
Y4146_MYCPA
A:
[42-126]
---------------------------------
I
I
A
C
D
I
C
A
P
V
S
A
S
V
T
Y
A
P
A
S
P
E
D
L
D
E
------
T
A
R
L
V
----------------
E
D
Q
G
R
K
A
L
T
R
V
L
D
VR
D
-
D
A
A
------
L
R
E
L
--
V
A
D
G
M
E
Q
F
G
---
R
L
D
-
V
V
V
A
N
A
G
V
L
S
W
G
R
V
W
-
E
------
L
T
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
86
Fugue
56.37
9%
-20
- C6 -
2ILR
-
FANCE_HUMAN
A:
[275-535]
AESLELP
K
A
I
Q
D
Q
L
P
R
L
Q
Q
L
L
K
T
L
E
E
A
P
P
V
E
L
Q
L
L
H
E
C
S
P
S
Q
M
D
L
L
C
A
Q
L
Q
L
P
Q
L
S
D
L
G
------
L
L
R
L
C
T
W
L
-----
L
A
LSPDLS
L
S
N
A
T
V
L
T
R
S
L
F
L
--
G
-
R
I
L
S
LTSSA
S
R
L
L
--
T
T
A
L
T
S
F
A
A
---
K
Y
T
Y
P
V
C
S
A
L
L
D
P
V
L
Q
A
P
G
-
T
------
G
P
A
Q
T
E
L
L
C
C
L
V
K
M
E
SLE
P
D
A
Q
V
L
M
L
G
Q
I
L
E
LPW
K
-
E
E
-------
T
F
L
V
L
Q
S
L
L
E
R
Q
V
E
M
T
P
---
E
----
K
F
S
V
L
M
-------
E
K
L
----
C
KT
T
S
M
A
------
Y
A
K
L
M
L
T
V
M
T
K
Y
Q
A
NI
T
E
T
Q
------
R
L
G
L
A
M
A
L
EPNTTFL
R
K
S
L
K
A
A
L
K
H
L
G
-----------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
56.02
27%
14
- C5 -
3RPX
8
C1QBP_HUMAN
A:
[70-180]
-----------------------------------------------------------------
T
P
N
F
V
V
E
V
-----
I
K
------
N
D
D
G
K
K
A
---
L
V
L
--
D
-
C
H
Y
------
P
E
------------
S
DIF
S
I
R
E
V
S
F
Q
S
T
-----
K
-----------
D
T
N
Y
------
T
L
N
T
D
------
S
--------
L
---
D
-
W
A
-------
L
Y
D
H
L
M
D
F
L
A
------
D
---
R
----
G
V
D
N
T
F
A
D
E
L
V
E
L
S
T
A
----
L
--
E
H
Q
E
------
Y
I
T
F
L
E
D
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
HHSearch
54.66
19%
-47
- C5 -
4LQ8
-
?
A:
[85-164]
----------------------------------------------------------------------------------------------------------------------------
I
T
K
---
A
V
R
E
T
I
I
Q
P
Q
K
D
N
L
I
E
Q
I
L
-
K
D
L
A
A
LT
D
R
D
L
A
E
Q
K
R
K
E
I
E
E
E
K
E
----
K
D
K
T
L
S
T
F
F
G
---
N
-
P
A
-------
N
R
E
F
I
D
K
A
L
E
------
K
---
P
----
E
L
K
K
K
L
-------
E
S
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
87
Fugue
54.56
12%
-19
- C5 -
3HJL
-
FLIG_AQUAE
A:
[5-325]
--------------------------
K
S
A
L
S
K
A
Q
K
A
A
V
L
L
L
S
L
P
E
E
V
S
M
N
I
V
K
E
L
S
E
E
E
------
L
Q
K
L
F
A
L
A
K
D
LES
V
P
------
E
E
E
I
E
N
I
A
E
E
L
L
D
--
E
-
I
K
K
------
A
G
I
K
--
I
K
K
P
E
E
F
I
E
---
N
I
K
K
V
I
P
P
T
L
A
E
K
F
R
G
I
L
E
-
L
------
G
D
A
-
E
K
I
L
K
E
I
E
K
V
D
------
S
R
I
L
A
S
L
L
K
N
---
E
H
P
Q
-------
T
I
A
L
F
L
S
Q
L
S
------
P
---
K
----
K
S
A
E
I
I
-------
Q
N
L
----
P
--
E
E
L
K
------
K
E
V
V
K
R
I
A
T
L
E
N
V
N
--
V
Q
Y
V
------
K
E
L
A
Q
I
L
L
-------
E
E
I
S
S
L
G
A
K
E
A
L
KLE
G
T
A
V
A
A
E
L
L
N
T
LD
K
E
T
R
E
L
I
L
Q
S
I
G
Q
E
D
P
L
L
E
E
R
I
R
E
K
M
F
TFEDIRKLS
D
R
D
I
I
E
I
L
K
V
VD
K
N
T
L
M
I
A
L
LGAP
E
D
I
K
Q
K
F
L
S
N
MS
K
R
A
A
K
L
F
L
E
D
M
E
A
L
GPVK
K
S
E
I
E
K
A
Q
R
Q
V
V
N
I
I
R
K
M
I
D
EGKIE
84
Fugue
52.83
16%
22
- C3 -
1ZPS
15
HIS3_METTH
A:
[8-131]
----------------------------------------------
V
N
I
L
L
N
F
R
H
N
I
N
G
------
E
D
L
I
I
A
V
A
-----
Q
D
------
H
E
T
G
E
V
L
M
V
A
Y
M
N
--
R
-
E
A
L
------
R
R
T
L
--
E
T
G
T
-----------
A
H
Y
W
S
T
S
R
G
K
L
W
L
--------------------
K
G
E
S
S
G
------
H
V
Q
R
V
K
D
V
L
V
---
D
-
C
D
-------
G
D
A
V
V
L
K
V
E
Q
------
E
---
G
----
G
---------------------------------------
A
C
H
T
G
Y
R
--
S
C
F
Y
------
R
S
I
D
G
D
E
L
-------
K
V
R
E
D
A
V
K
V
F
D
P
-----------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
51.41
26%
-38
- C5 -
2LLW
-
STI1_YEAST
A:
[528-580]
---------------------------------------------------------------------------------------------------------------------------------------------
E
E
T
Y
Q
R
A
M
-
K
------
D
P
E
V
A
A
----------------------
I
M
Q
---
D
-
P
V
-------
M
Q
S
I
L
Q
Q
A
Q
Q
------
N
---
P
----
A
---
A
L
-------
Q
E
H
----
M
--
K
N
P
E
------
V
F
K
K
I
Q
T
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.26
21%
-70
- C5 -
2LNM
-
A:
[3-54]
----------------------------------------------------------------------------------------------------------------------------------------------
E
V
I
S
K
I
M
-
E
------
N
P
D
V
A
M
----------------------
A
F
Q
---
N
-
P
R
-------
V
Q
A
A
L
M
E
C
S
E
------
N
---
P
----
M
N
---
I
-------
M
K
Y
----
Q
--
N
D
K
E
------
V
M
D
V
F
N
K
I
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
49.02
15%
-38
- C5 -
2KR0
-
ADRM1_HUMAN
A:
[296-353]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
A
P
I
L
A
---
N
-
A
D
-------
V
Q
E
R
L
L
P
Y
L
P
------
S
---
G
E
S
L
P
Q
T
A
D
E
I
-------
Q
N
T
----
L
--
T
S
P
Q
------
F
Q
Q
A
L
G
M
-
F
S
A
A
L
A
--
S
G
Q
L
------
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------
83
Fugue
48.65
11%
34
- C4 -
2HWJ
-
?
A:
[4-204]
--------------------------
I
Y
E
P
R
L
S
R
I
A
I
D
K
L
R
P
T
Q
I
A
V
G
F
R
E
V
E
L
K
R
K
E
W
R
E
TRDF
L
G
N
H
I
V
P
V
-----
V
A
------
G
P
K
D
R
A
Y
L
I
D
--
H
--
H
-
H
L
V
------
L
A
L
S
--
K
E
G
V
E
H
V
L
T
---
S
E
V
A
K
F
S
H
L
G
K
D
E
F
W
S
--
V
M
D
------
H
R
N
L
I
Y
P
F
D
A
Q
G
L
R
R
------
Q
S
G
D
I
P
K
N
I
H
DL-
E
-
D
D
-------
P
F
R
S
L
A
G
A
L
R
M
-----
A
---
G
----
G
Y
A
K
V
I
-------
I
P
F
-------
S
E
F
G
------
W
A
D
F
L
R
R
R
I
D
R
D
L
L
--
S
D
-
S
------
F
D
D
A
L
A
E
A
M
------
K
L
A
K
S
R
E
A
R
H
L
P
G
W
C
G
V
E-----------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.56
24%
2
- C5 -
2LV3
-
TRXR3_MOUSE
A:
[54-123]
---------------------------------------------------------------------------------------------
V
K
E
L
F
S
--
S
L
G
V
V
------
Y
N
I
L
--
E
L
D
Q
V
D
D
G
A
---
S
V
Q
E
V
L
T
E
I
S
N
Q
K
T
V
P
N
I
F
-
V
------
N
K
V
H
V
G
G
C
D
R
T
F
Q
A
H
------
Q
N
G
L
L
Q
K
L
L
Q
---
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
47.20
19%
-63
- C5 -
2LLV
-
STI1_YEAST
A:
[140-191]
----------------------------------------------------------------------------------------------------------------------------------------------
N
L
I
E
N
L
K
-
K
------
N
P
K
T
S
E
----------------------
M
M
K
---
D
-
P
Q
-------
L
V
A
K
L
I
G
Y
K
Q
------
N
---
P
----
Q
A
I
--
G
-------
Q
D
L
----
F
--
T
D
P
R
------
L
M
T
I
M
A
T
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------