@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1124: (2015-12-21 )
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MPD_A_7(4REO)
RL1_THETH
[Raw transfer]




PG4_A_4(3TG8)
RL1_THET8
[Raw transfer]




ACY_A_5(3QOY)
RL1_AQUAE
[Raw transfer]




ACY_A_5(3QOY)
RL1_AQUAE
[Raw transfer]




GLY_A_10(4REO)
RL1_THETH
[Raw transfer]




NH2_A_2(1P0O)
RL1_HELPY
[Raw transfer]




31 HHSearch 96.3951% -97 - C2 -3QOY 3.1 RL1_AQUAE
1 PsiBlast_PDB 94.4253%-103 - C2 -3QOY 3.1 RL1_AQUAE
14 PsiBlast_PDB 93.5348% -97 - C2 -1ZHO - RL1_THETH -
13 PsiBlast_PDB 92.9748% -99 - C2 -2HW8 - RL1_THETH -
5 PsiBlast_PDB 92.9349% -95 - C2 -4QG3 - RL1_THETH -
11 PsiBlast_PDB 92.5148% -98 - C2 -3UMY - RL1_THETH -
4 PsiBlast_PDB 92.4049% -99 - C2 -3U4M - RL1_THETH -
9 PsiBlast_PDB 91.9948% -95 - C2 -3U56 - RL1_THETH -
41 Fugue 91.4349%-106 - C2 -487D - RL1_ECOLI -
6 PsiBlast_PDB 91.3248% -95 - C2 -4QVI - RL1_THETH -
8 PsiBlast_PDB 91.2848%-101 - C2 -1AD2 - RL1_THETH -
10 PsiBlast_PDB 91.2048% -94 - C2 -4REO 3.0 RL1_THETH
7 PsiBlast_PDB 90.9448%-101 - C2 -487D - RL1_ECOLI -
12 PsiBlast_PDB 90.0949%-103 - C2 -3TG8 2.0 RL1_THET8
21 PsiBlast_CBE 87.3049% -93 - C2 -4QGB - RL1_THETH -
15 PsiBlast_PDB 86.4849% -91 - C2 -4QGB - RL1_THETH -
16 PsiBlast_PDB 84.5250% -76 - C2 -3J5S - RL1_ECOLI -
35 HHSearch 80.8046% -92 * C2 *2OV7 - RL1_THETH -
20 PsiBlast_PDB 71.2729% -80 - C2 -1DWU - RL1_METTL -
33 HHSearch 61.1323% -79 - C2 -2NOQ - RL1A_YEAST -
48 Fugue 26.9389% 92 - C2 -1P0O 2.5 RL1_HELPY