@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0130: (2016-03-12 )
VKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAADTVPIQILGINDFHGALETASKDASGSPIGGADYLATNLDNATNSFLQANPGATTDNAIRVQAGDMVGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIVEAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLANHIKDYDFLDEAETIVKYSAELRGQGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAANMMTKANELDPNNSVDLVLAGHNHQYTNGLVGKTRIVQSYNNGKAFSDVTGELDKTTGDFVSPPDAKITYNTRSVTPNADITAVTEDAKSRIEGVINETIGLANKDVISRDTNPDNKAIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAAQAVQPFGNILQVVEMTGADILEALNQQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVASVTTEDGTPLKTDQKYKVVINDFLFGGGDGFSAFKKANLVTAIDPDTETFINYIKDQKAAGKVITAQKEGRKVYKSQAEIDKETKDAAIKAIKEATKINKLAEKDKTLTGTTLPGATVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTFQATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTTTSNTSTTGTSSNTSLPTTGDTAGLATVFGVILTTTALYVLRKRS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A12_A_4(4H2I)
5NTD_HUMAN
[Raw transfer]



CTN_A_4(3IVE)
?
[Raw transfer]



URI_A_5(3IVD)
?
[Raw transfer]



THM_A_5(2Z1A)
?
[Raw transfer]



EPE_A_4(3JYF)
?
[Raw transfer]



FMT_A_9(3C9F)
?
[Raw transfer]



CIT_A_5(3GVE)
NTPES_BACSU
[Raw transfer]



FEO_A_4(1UTE)
PPA5_PIG
[Raw transfer]
42 HHSearch 96.5028% -52 - C1 -2Z1A - ? -
1 PsiBlast_PDB 93.0928% -52 - C1 -2Z1A 5.0 ?
2 PsiBlast_PDB 89.8025% -53 - C1 -4H1S - 5NTD_HUMAN -
5 PsiBlast_PDB 88.9424% -52 - C1 -4H2I 5.6 5NTD_HUMAN
6 PsiBlast_PDB 88.8024% -53 - C1 -4H1Y - 5NTD_HUMAN -
7 PsiBlast_PDB 88.7424% -52 - C1 -4H2B - 5NTD_HUMAN -
4 PsiBlast_PDB 88.6424% -54 - C1 -4H2G - 5NTD_HUMAN -
3 PsiBlast_PDB 88.5924% -50 - C1 -4H2F - 5NTD_HUMAN -
44 HHSearch 83.6024% -42 * C1 *3IVE 5.6 ?
64 Fugue 79.5220% -34 - C1 -3ZTV - 5NTD_HAEIN -
13 PsiBlast_PDB 79.0121% -53 - C1 -2USH - USHA_ECOLI -
43 HHSearch 78.5620% -56 - C1 -1HP1 - USHA_ECOLI -
14 PsiBlast_PDB 77.6921% -50 - C1 -1USH - USHA_ECOLI -
8 PsiBlast_PDB 74.2826% -39 - C1 -3IVD 6.7 ?
45 HHSearch 71.7418% -44 - C1 -2WDC - ? -
68 Fugue 71.0617% -34 - C1 -2WDC - ? -
47 HHSearch 69.7824% -50 - C1 -3JYF 2.3 ?
20 PsiBlast_PDB 69.5721% -55 - C1 -1HPU - USHA_ECOLI -
18 PsiBlast_PDB 69.0121% -58 - C1 -1OI8 - USHA_ECOLI -
16 PsiBlast_PDB 69.0121% -58 - C1 -1OID - USHA_ECOLI -