@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0123: (2016-03-12 )
MERVLITGGAGFIGSHLVDDLQQDYDVYVLDNYRTGKRENIKSLADDHVFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQSLILPLSPYAIDKYYGERTTLNYCSLYNIPTAVVKFFNVFGPRQDPKSQYSGVISKMFDSFEHNKPFTFFGDGLQTRDFVYVYDVVQSVRLIMEHKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNLKALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_2(2P5Y)
?
[Raw transfer]



NAD_B_6(2P5U)
?
[Raw transfer]



NAD_B_6(4ZRM)
?
[Raw transfer]



NAD_A_5(2P5U)
?
[Raw transfer]



NAD_D_8(2P5U)
?
[Raw transfer]



NAD_C_7(2P5U)
?
[Raw transfer]



NAD_A_2(3ICP)
?
[Raw transfer]



NAD_A_2(3KO8)
?
[Raw transfer]



NAD_A_3(4ZRM)
?
[Raw transfer]



NAD_A_3(4ZRN)
?
[Raw transfer]



NAD_C_3(1SB9)
?
[Raw transfer]



NAD_B_5(4ZRN)
?
[Raw transfer]



NAD_C_3(1SB8)
?
[Raw transfer]



GOL_A_5(4ZRM)
?
[Raw transfer]



GOL_B_7(4ZRM)
?
[Raw transfer]



EDO_A_10(1UDC)
GALE_ECOLI
[Raw transfer]
21 PsiBlast_CBE 85.7238% -98 - C1 -4ZRN 12.1 ?
25 PsiBlast_CBE 84.7935% -96 - C1 -2P5U 11.2 ?
6 PsiBlast_PDB 84.7935% -95 - C1 -2P5Y 12.3 ?
23 PsiBlast_CBE 83.6935% -94 - C1 -2P5U 11.1 ?
24 PsiBlast_CBE 83.6335% -91 - C1 -2P5U 11.9 ?
2 PsiBlast_PDB 83.2638% -96 - C1 -4ZRN 12.7 ?
5 PsiBlast_PDB 83.2135% -93 - C1 -2P5U 10.2 ?
22 PsiBlast_CBE 81.7938% -96 - C1 -4ZRM 12.5 ?
1 PsiBlast_PDB 81.3138% -95 - C1 -4ZRM 12.7 ?
58 PsiBlast_CBE 79.4031% -91 - C1 -1KVU - GALE_ECOLI -
16 PsiBlast_PDB 78.8231% -94 - C1 -1LRK - GALE_ECOLI -
19 PsiBlast_PDB 78.6231% -91 - C1 -1UDC 2.4 GALE_ECOLI
67 PsiBlast_CBE 78.4231% -91 - C1 -1KVT - GALE_ECOLI -
53 PsiBlast_CBE 78.3731% -92 - C1 -1UDB - GALE_ECOLI -
52 PsiBlast_CBE 78.3231% -92 - C1 -1XEL - GALE_ECOLI -
17 PsiBlast_PDB 78.1631% -92 - C1 -1LRL - GALE_ECOLI -
18 PsiBlast_PDB 77.7831% -91 - C1 -2UDP - GALE_ECOLI -
3 PsiBlast_PDB 77.6536% -85 - C1 -1SB8 12.1 ?
51 PsiBlast_CBE 77.4131% -93 - C1 -2UDP - GALE_ECOLI -
60 PsiBlast_CBE 77.1031% -90 - C1 -1KVS - GALE_ECOLI -
4 PsiBlast_PDB 75.8336% -87 - C1 -1SB9 11.6 ?
77 PsiBlast_CBE 70.9031% -99 - C1 -3KO8 11.4 ?
78 PsiBlast_CBE 63.2331% -97 - C1 -3ICP 11.6 ?