@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0938: (2016-03-20 )
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNPDVIIRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MPO_C_11(4LRQ)
?
[Raw transfer]




MPO_B_8(4LRQ)
?
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




MPO_D_14(4LRQ)
?
[Raw transfer]




EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]




MPO_A_5(4LRQ)
?
[Raw transfer]




PMS_A_5(4Z9A)
?
[Raw transfer]




EPE_C_3(1D1P)
PPAL_YEAST
[Raw transfer]




EPE_A_3(3IDO)
?
[Raw transfer]




EPE_B_4(3IDO)
?
[Raw transfer]




EPE_A_3(3JS5)
?
[Raw transfer]




MES_B_2(5PNT)
PPAC_HUMAN
[Raw transfer]




B85_A_2(4Z9B)
?
[Raw transfer]




EPE_D_4(1D1P)
PPAL_YEAST
[Raw transfer]




GOL_A_3(1U2Q)
PTPA_MYCTU
[Raw transfer]




1 PsiBlast_PDB 98.6644%-101 - C8 -4ETM - YFKJ_BACSU -
21 PsiBlast_CBE 96.8744%-101 - C8 -4ETM - YFKJ_BACSU -
24 PsiBlast_CBE 89.8041% -82 - C8 -2P4U - PPAC_MOUSE -
23 PsiBlast_CBE 89.3241% -78 - C8 -2P4U - PPAC_MOUSE -
2 PsiBlast_PDB 89.3241% -80 - C8 -2P4U - PPAC_MOUSE -
9 PsiBlast_PDB 88.8440% -81 - C8 -1Z12 - PPAC_BOVIN -
22 PsiBlast_CBE 88.6641% -78 - C8 -2P4U - PPAC_MOUSE -
30 PsiBlast_CBE 87.3338% -92 - C8 -2CWD - ? -
10 PsiBlast_PDB 87.2140% -75 - C8 -1Z13 - PPAC_BOVIN -
8 PsiBlast_PDB 86.9940% -78 - C8 -1DG9 4.6 PPAC_BOVIN
25 PsiBlast_CBE 86.6939% -85 - C8 -1C0E - PPAC_BOVIN -
29 PsiBlast_CBE 86.3838% -90 - C8 -2CWD - ? -
41 PsiBlast_CBE 86.2031% -87 - C8 -1U2P - PTPA_MYCTU -
12 PsiBlast_PDB 86.1540% -79 - C8 -1PNT - PPAC_BOVIN -
11 PsiBlast_PDB 86.1240% -77 - C8 -1PHR - PPAC_BOVIN -
31 PsiBlast_CBE 86.0838% -87 - C8 -2CWD - ? -
15 PsiBlast_PDB 86.0539% -79 - C8 -1C0E - PPAC_BOVIN -
20 PsiBlast_PDB 85.5634% -68 - C8 -1D1P 3.9 PPAL_YEAST
6 PsiBlast_PDB 85.5638% -77 - C8 -4Z9A 3.9 ?
32 PsiBlast_CBE 85.2934% -69 - C8 -1D1P 3.0 PPAL_YEAST
3 PsiBlast_PDB 84.9438% -79 - C8 -5PNT 3.6 PPAC_HUMAN
7 PsiBlast_PDB 84.5938% -77 - C8 -4Z9B 5.2 ?
40 PsiBlast_CBE 84.0031% -82 * C8 *1U2Q 2.3 PTPA_MYCTU
34 PsiBlast_CBE 83.4733% -66 - C8 -1D1Q 4.4 PPAL_YEAST
57 HHSearch 83.3133% -88 - C8 -1D1Q 4.4 PPAL_YEAST
27 PsiBlast_CBE 79.3840% -64 - C8 -4LRQ 4.9 ?
26 PsiBlast_CBE 77.3940% -62 - C8 -4LRQ 4.6 ?
28 PsiBlast_CBE 77.2640% -64 - C8 -4LRQ 4.5 ?
17 PsiBlast_PDB 75.7840% -62 - C8 -4LRQ 4.7 ?
37 PsiBlast_CBE 74.7634% -79 - C8 -3JS5 4.5 ?
38 PsiBlast_CBE 74.0434% -80 - C8 -3IDO 4.4 ?
39 PsiBlast_CBE 73.1334% -77 - C8 -3IDO 4.3 ?